Clone BS10245 Report

Search the DGRC for BS10245

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)08717-RA
Protein status:BS10245.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10245.3prime Sequence

917 bp (840 high quality bases) assembled on 2006-04-19

> BS10245.3prime
ATGGTCTAGAAAGCTTCTATTTGACCTGGCCATTGGGCGCCAGAGGCGTG
CCCTGCTCCGCATCCTCCTTATTGTCCCGTGGGGAGTCCCACCATTGCAC
CTCCGTGCGTCCAAATATGACGAAGAGAAGATTGCCCAAGAAGTAGAAGG
CGGCAGCCAGCAGGAACACCAATCGCCACTCAGTTACGCTTGTCTCATCG
ACGACAATCTGTCCCACGATCACTGGTGCGATTCCACTCATCACGTTTGC
CGCACAATTCGTAATGCCCATCAGGGTTCCGGCGTAATTCGGGGACAGAT
CGATGTGGTTCACCTGGAAGCCCAGATAGGTGGCTCCGCTGATTCCCACC
GTTAGGGTGAGCAGTGTTACCGCCAGTGGAGCATTATCCGCCGGCACATA
ACCTAGCGCGATCAGCGAGAGCATAGGTATCCAATGGCCAATGCTGTTGA
AAATCTTGCGGTTGAAGGACAGAGACATGCCTTCCTTCTTTTGGAGCACT
TTGGATAGCCAGACGAAAAAGAAGCTGAGGAGCAGCATCACCATGTAGGG
TAGGGAGGAGAGCAGCGCACCCTTCTTGATGTCCACGTGGTAGATCTTCT
TCATGTACGTGGGAATCTGCATGAGCAGCAGCCAGTAACCGAAAATGTGG
GTGCAGTGCACCACCAGCAGAGACAGGAAGGGCAGGGAACTAAAGATGGC
CTTCCAGGGCGTGGGTGCCAGTTTCTCGGCGGATTGCATCTTGCCATCGC
TCCGCGAATCCGTAATGTACTTCAGCTCTCCGGGCGAAATCAGACGGTGT
TCCTCCGGCGTGCTGGCCGAGAATAGGTACCAGAAAACCATCCAAATAAA
GCCGCATGCTCCGCCCAAATAGAAGATACTCGGCCAGCCCAAGACGGAGT
CGGCAATGAAACCGCTA

BS10245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15095-PB 1494 l(2)08717-RB 594..1494 917..17 4505 100 Minus
CG15095-PA 1494 l(2)08717-RA 594..1494 917..17 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)08717-RC 2337 CG15095-RC 933..1834 917..16 4510 100 Minus
l(2)08717-RA 2048 CG15095-RA 933..1834 917..16 4510 100 Minus
l(2)08717-RB 2999 CG15095-RB 1884..2785 917..16 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18797716..18798439 194..917 3620 100 Plus
2R 25286936 2R 18797478..18797657 16..195 900 100 Plus
2R 25286936 2R 18795124..18795209 249..334 250 86 Plus
Blast to na_te.dros performed on 2015-02-11 23:56:41 has no hits.

BS10245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:57 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15095-PB 595..1494 17..916 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:42 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15095-PA 595..1494 17..916 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:49:44 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1885..2787 13..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:32 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1885..2787 13..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:32 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18797476..18797655 13..193 99 <- Plus
2R 18797716..18798438 194..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:49:44 Download gff for BS10245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14684981..14685160 13..193 99 <- Plus
arm_2R 14685221..14685943 194..916 100   Plus

BS10245.5prime Sequence

909 bp (799 high quality bases) assembled on 2006-04-19

> BS10245.5prime
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCCCTGGAAAGCCATCTTTAGTTCCCTGCCCTTT
CTGTCTCTGCTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCT
GCTCATGCA

BS10245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15095-PB 1494 l(2)08717-RB 1..893 17..909 4415 99.7 Plus
CG15095-PA 1494 l(2)08717-RA 1..893 17..909 4415 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)08717-RC 2337 CG15095-RC 338..1232 15..909 4445 99.8 Plus
l(2)08717-RA 2048 CG15095-RA 338..1232 15..909 4445 99.8 Plus
l(2)08717-RB 2999 CG15095-RB 1289..2183 15..909 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18798140..18798794 909..255 3245 99.7 Minus
2R 25286936 2R 18799073..18799264 256..65 960 100 Minus
2R 25286936 2R 18802018..18802068 65..15 255 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:10:52 has no hits.

BS10245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:58 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15095-PB 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:44 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15095-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:49:09 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1286..2182 9..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:18 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1286..2182 9..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:18 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18799073..18799263 66..256 100 <- Minus
2R 18802018..18802071 9..65 94   Minus
2R 18798141..18798792 257..908 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:49:09 Download gff for BS10245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14685646..14686297 257..908 99 <- Minus
arm_2R 14686578..14686768 66..256 100 <- Minus
arm_2R 14689523..14689576 9..65 94   Minus

BS10245.complete Sequence

1526 bp (1526 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636612

> BS10245.complete
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCCCTGGAAGGCCATCTTTAGTTCCCTGCCCTTC
CTGTCTCTGCTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCT
GCTCATGCAGATTCCCACGTACATGAAGAAGATCTACCACGTGGACATCA
AGAAGGGTGCGCTGCTCTCCTCCCTACCCTACATGGTGATGCTGCTCCTC
AGCTTCTTTTTCGTCTGGCTATCCAAAGTGCTCCAAAAGAAGGAAGGCAT
GTCTCTGTCCTTCAACCGCAAGATTTTCAACAGCATTGGCCATTGGATAC
CTATGCTCTCGCTGATCGCGCTAGGTTATGTGCCGGCGGATAATGCTCCA
CTGGCGGTAACACTGCTCACCCTAACGGTGGGAATCAGCGGAGCCACCTA
TCTGGGCTTCCAGGTGAACCACATCGATCTGTCCCCGAATTACGCCGGAA
CCCTGATGGGCATTACGAATTGTGCGGCAAACGTGATGAGTGGAATCGCA
CCAGTGATCGTGGGACAGATTGTCGTCGATGAGACAAGCGTAACTGAGTG
GCGATTGGTGTTCCTGCTGGCTGCCGCCTTCTACTTCTTGGGCAATCTTC
TCTTCGTCATATTTGGACGCACGGAGGTGCAATGGTGGGACTCCCCACGG
GACAATAAGGAGGATGCGGAGCAGGGCACGCCTCTGGCGCCCAATGGCCA
GGTCAAATAGAAGCTTTCTAGACCAT

BS10245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)08717-RC 1494 CG15095-PC 1..1494 17..1510 7470 100 Plus
l(2)08717-RA 1494 CG15095-PA 1..1494 17..1510 7470 100 Plus
l(2)08717-RB 1494 CG15095-PB 1..1494 17..1510 7470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)08717-RC 2337 CG15095-RC 338..1834 15..1511 7485 100 Plus
l(2)08717-RA 2048 CG15095-RA 338..1834 15..1511 7485 100 Plus
l(2)08717-RB 2999 CG15095-RB 1289..2785 15..1511 7485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18797716..18798794 1333..255 5395 100 Minus
2R 25286936 2R 18799073..18799264 256..65 960 100 Minus
2R 25286936 2R 18797478..18797657 1511..1332 900 100 Minus
2R 25286936 2R 18802018..18802068 65..15 255 100 Minus
2R 25286936 2R 18795124..18795209 1278..1193 250 86 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:13 has no hits.

BS10245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:25 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RA 1..1494 17..1510 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:53 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RA 329..1830 9..1514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:11 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1291..2778 17..1504 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:25 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RA 329..1830 9..1514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:02 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)08717-RB 1291..2778 17..1504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:02 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18797485..18797655 1334..1504 100 <- Minus
2R 18799073..18799263 66..256 100 <- Minus
2R 18802018..18802066 17..65 100   Minus
2R 18797716..18798792 257..1333 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:11 Download gff for BS10245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14684990..14685160 1334..1504 100 <- Minus
arm_2R 14685221..14686297 257..1333 100 <- Minus
arm_2R 14686578..14686768 66..256 100 <- Minus
arm_2R 14689523..14689571 17..65 100   Minus

BS10245.pep Sequence

Translation from 16 to 1509

> BS10245.pep
MTTALTMVKTGGKYANEKFFGVRHVQCILCFFCLAMSYAWRVNLSVALVA
MTDNSTSLAQNNTNTGVAPSEPGFDFFNSERYYNFTQKEKGNLQASFFFG
YIVTQVPGGYIAQRYGAKTMLMYGLGIAALITMLSPMSLQFGWVALAVMR
FVMGLAQGAVHPATHALLAKWSPADERGMLGTLCYSGAQFGTVVMLATSG
FIADSVLGWPSIFYLGGACGFIWMVFWYLFSASTPEEHRLISPGELKYIT
DSRSDGKMQSAEKLAPTPWKAIFSSLPFLSLLVVHCTHIFGYWLLLMQIP
TYMKKIYHVDIKKGALLSSLPYMVMLLLSFFFVWLSKVLQKKEGMSLSFN
RKIFNSIGHWIPMLSLIALGYVPADNAPLAVTLLTLTVGISGATYLGFQV
NHIDLSPNYAGTLMGITNCAANVMSGIAPVIVGQIVVDETSVTEWRLVFL
LAAAFYFLGNLLFVIFGRTEVQWWDSPRDNKEDAEQGTPLAPNGQVK*

BS10245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)08717-PC 497 CG15095-PC 1..497 1..497 2608 100 Plus
l(2)08717-PA 497 CG15095-PA 1..497 1..497 2608 100 Plus
l(2)08717-PB 497 CG15095-PB 1..497 1..497 2608 100 Plus
MFS15-PA 497 CG15094-PA 24..469 20..476 1201 51.2 Plus
CG15096-PB 475 CG15096-PB 2..459 5..477 1159 49.4 Plus