Clone Sequence Records
BS10245.3prime Sequence
917 bp (840 high quality bases) assembled on 2006-04-19
> BS10245.3prime
ATGGTCTAGAAAGCTTCTATTTGACCTGGCCATTGGGCGCCAGAGGCGTG
CCCTGCTCCGCATCCTCCTTATTGTCCCGTGGGGAGTCCCACCATTGCAC
CTCCGTGCGTCCAAATATGACGAAGAGAAGATTGCCCAAGAAGTAGAAGG
CGGCAGCCAGCAGGAACACCAATCGCCACTCAGTTACGCTTGTCTCATCG
ACGACAATCTGTCCCACGATCACTGGTGCGATTCCACTCATCACGTTTGC
CGCACAATTCGTAATGCCCATCAGGGTTCCGGCGTAATTCGGGGACAGAT
CGATGTGGTTCACCTGGAAGCCCAGATAGGTGGCTCCGCTGATTCCCACC
GTTAGGGTGAGCAGTGTTACCGCCAGTGGAGCATTATCCGCCGGCACATA
ACCTAGCGCGATCAGCGAGAGCATAGGTATCCAATGGCCAATGCTGTTGA
AAATCTTGCGGTTGAAGGACAGAGACATGCCTTCCTTCTTTTGGAGCACT
TTGGATAGCCAGACGAAAAAGAAGCTGAGGAGCAGCATCACCATGTAGGG
TAGGGAGGAGAGCAGCGCACCCTTCTTGATGTCCACGTGGTAGATCTTCT
TCATGTACGTGGGAATCTGCATGAGCAGCAGCCAGTAACCGAAAATGTGG
GTGCAGTGCACCACCAGCAGAGACAGGAAGGGCAGGGAACTAAAGATGGC
CTTCCAGGGCGTGGGTGCCAGTTTCTCGGCGGATTGCATCTTGCCATCGC
TCCGCGAATCCGTAATGTACTTCAGCTCTCCGGGCGAAATCAGACGGTGT
TCCTCCGGCGTGCTGGCCGAGAATAGGTACCAGAAAACCATCCAAATAAA
GCCGCATGCTCCGCCCAAATAGAAGATACTCGGCCAGCCCAAGACGGAGT
CGGCAATGAAACCGCTA
BS10245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15095-PB | 1494 | l(2)08717-RB | 594..1494 | 917..17 | 4505 | 100 | Minus |
CG15095-PA | 1494 | l(2)08717-RA | 594..1494 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 933..1834 | 917..16 | 4510 | 100 | Minus |
l(2)08717-RA | 2048 | CG15095-RA | 933..1834 | 917..16 | 4510 | 100 | Minus |
l(2)08717-RB | 2999 | CG15095-RB | 1884..2785 | 917..16 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18797716..18798439 | 194..917 | 3620 | 100 | Plus |
2R | 25286936 | 2R | 18797478..18797657 | 16..195 | 900 | 100 | Plus |
2R | 25286936 | 2R | 18795124..18795209 | 249..334 | 250 | 86 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:56:41 has no hits.
BS10245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:57 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PB | 595..1494 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:42 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PA | 595..1494 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:49:44 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1885..2787 | 13..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:32 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1885..2787 | 13..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:32 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18797476..18797655 | 13..193 | 99 | <- | Plus |
2R | 18797716..18798438 | 194..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:49:44 Download gff for
BS10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14684981..14685160 | 13..193 | 99 | <- | Plus |
arm_2R | 14685221..14685943 | 194..916 | 100 | | Plus |
BS10245.5prime Sequence
909 bp (799 high quality bases) assembled on 2006-04-19
> BS10245.5prime
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCCCTGGAAAGCCATCTTTAGTTCCCTGCCCTTT
CTGTCTCTGCTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCT
GCTCATGCA
BS10245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15095-PB | 1494 | l(2)08717-RB | 1..893 | 17..909 | 4415 | 99.7 | Plus |
CG15095-PA | 1494 | l(2)08717-RA | 1..893 | 17..909 | 4415 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 338..1232 | 15..909 | 4445 | 99.8 | Plus |
l(2)08717-RA | 2048 | CG15095-RA | 338..1232 | 15..909 | 4445 | 99.8 | Plus |
l(2)08717-RB | 2999 | CG15095-RB | 1289..2183 | 15..909 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18798140..18798794 | 909..255 | 3245 | 99.7 | Minus |
2R | 25286936 | 2R | 18799073..18799264 | 256..65 | 960 | 100 | Minus |
2R | 25286936 | 2R | 18802018..18802068 | 65..15 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:52 has no hits.
BS10245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:33:58 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:44 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:49:09 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1286..2182 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:18 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1286..2182 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:18 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18799073..18799263 | 66..256 | 100 | <- | Minus |
2R | 18802018..18802071 | 9..65 | 94 | | Minus |
2R | 18798141..18798792 | 257..908 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:49:09 Download gff for
BS10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14685646..14686297 | 257..908 | 99 | <- | Minus |
arm_2R | 14686578..14686768 | 66..256 | 100 | <- | Minus |
arm_2R | 14689523..14689576 | 9..65 | 94 | | Minus |
BS10245.complete Sequence
1526 bp (1526 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636612
> BS10245.complete
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCCCTGGAAGGCCATCTTTAGTTCCCTGCCCTTC
CTGTCTCTGCTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCT
GCTCATGCAGATTCCCACGTACATGAAGAAGATCTACCACGTGGACATCA
AGAAGGGTGCGCTGCTCTCCTCCCTACCCTACATGGTGATGCTGCTCCTC
AGCTTCTTTTTCGTCTGGCTATCCAAAGTGCTCCAAAAGAAGGAAGGCAT
GTCTCTGTCCTTCAACCGCAAGATTTTCAACAGCATTGGCCATTGGATAC
CTATGCTCTCGCTGATCGCGCTAGGTTATGTGCCGGCGGATAATGCTCCA
CTGGCGGTAACACTGCTCACCCTAACGGTGGGAATCAGCGGAGCCACCTA
TCTGGGCTTCCAGGTGAACCACATCGATCTGTCCCCGAATTACGCCGGAA
CCCTGATGGGCATTACGAATTGTGCGGCAAACGTGATGAGTGGAATCGCA
CCAGTGATCGTGGGACAGATTGTCGTCGATGAGACAAGCGTAACTGAGTG
GCGATTGGTGTTCCTGCTGGCTGCCGCCTTCTACTTCTTGGGCAATCTTC
TCTTCGTCATATTTGGACGCACGGAGGTGCAATGGTGGGACTCCCCACGG
GACAATAAGGAGGATGCGGAGCAGGGCACGCCTCTGGCGCCCAATGGCCA
GGTCAAATAGAAGCTTTCTAGACCAT
BS10245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 1494 | CG15095-PC | 1..1494 | 17..1510 | 7470 | 100 | Plus |
l(2)08717-RA | 1494 | CG15095-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
l(2)08717-RB | 1494 | CG15095-PB | 1..1494 | 17..1510 | 7470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 338..1834 | 15..1511 | 7485 | 100 | Plus |
l(2)08717-RA | 2048 | CG15095-RA | 338..1834 | 15..1511 | 7485 | 100 | Plus |
l(2)08717-RB | 2999 | CG15095-RB | 1289..2785 | 15..1511 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18797716..18798794 | 1333..255 | 5395 | 100 | Minus |
2R | 25286936 | 2R | 18799073..18799264 | 256..65 | 960 | 100 | Minus |
2R | 25286936 | 2R | 18797478..18797657 | 1511..1332 | 900 | 100 | Minus |
2R | 25286936 | 2R | 18802018..18802068 | 65..15 | 255 | 100 | Minus |
2R | 25286936 | 2R | 18795124..18795209 | 1278..1193 | 250 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:13 has no hits.
BS10245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:25 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 1..1494 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:53 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 329..1830 | 9..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:11 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1291..2778 | 17..1504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:25 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 329..1830 | 9..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:02 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1291..2778 | 17..1504 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:02 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18797485..18797655 | 1334..1504 | 100 | <- | Minus |
2R | 18799073..18799263 | 66..256 | 100 | <- | Minus |
2R | 18802018..18802066 | 17..65 | 100 | | Minus |
2R | 18797716..18798792 | 257..1333 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:11 Download gff for
BS10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14684990..14685160 | 1334..1504 | 100 | <- | Minus |
arm_2R | 14685221..14686297 | 257..1333 | 100 | <- | Minus |
arm_2R | 14686578..14686768 | 66..256 | 100 | <- | Minus |
arm_2R | 14689523..14689571 | 17..65 | 100 | | Minus |
BS10245.pep Sequence
Translation from 16 to 1509
> BS10245.pep
MTTALTMVKTGGKYANEKFFGVRHVQCILCFFCLAMSYAWRVNLSVALVA
MTDNSTSLAQNNTNTGVAPSEPGFDFFNSERYYNFTQKEKGNLQASFFFG
YIVTQVPGGYIAQRYGAKTMLMYGLGIAALITMLSPMSLQFGWVALAVMR
FVMGLAQGAVHPATHALLAKWSPADERGMLGTLCYSGAQFGTVVMLATSG
FIADSVLGWPSIFYLGGACGFIWMVFWYLFSASTPEEHRLISPGELKYIT
DSRSDGKMQSAEKLAPTPWKAIFSSLPFLSLLVVHCTHIFGYWLLLMQIP
TYMKKIYHVDIKKGALLSSLPYMVMLLLSFFFVWLSKVLQKKEGMSLSFN
RKIFNSIGHWIPMLSLIALGYVPADNAPLAVTLLTLTVGISGATYLGFQV
NHIDLSPNYAGTLMGITNCAANVMSGIAPVIVGQIVVDETSVTEWRLVFL
LAAAFYFLGNLLFVIFGRTEVQWWDSPRDNKEDAEQGTPLAPNGQVK*
BS10245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-PC | 497 | CG15095-PC | 1..497 | 1..497 | 2608 | 100 | Plus |
l(2)08717-PA | 497 | CG15095-PA | 1..497 | 1..497 | 2608 | 100 | Plus |
l(2)08717-PB | 497 | CG15095-PB | 1..497 | 1..497 | 2608 | 100 | Plus |
MFS15-PA | 497 | CG15094-PA | 24..469 | 20..476 | 1201 | 51.2 | Plus |
CG15096-PB | 475 | CG15096-PB | 2..459 | 5..477 | 1159 | 49.4 | Plus |