Clone Sequence Records
BS10247.3prime Sequence
862 bp (792 high quality bases) assembled on 2006-04-19
> BS10247.3prime
ATGGTCTAGAAAGCTTTTAAGAGTAAATTGTTATAACTTCTCGGCCTCCT
CCGCGAACCATTAACACTTTTTCAAGGCCCTCTGTTAATACCTCCAGAAA
TTCCATATAATTTCTTTCACGCTCCGCTCTCACTTCCCTAGGTGGTCCAG
GTAGATTCATTATGACCAACTGGGCGTCCTGTGACTTTTCTACAATAACC
TCGTTTAGTTTTATTGCTGTGTGCATGCGACGAACGTTGAACTCATCCGG
TTTCACACTGGACTTGAAGTCTCCGTCGGCTTTCTCTGTCGATTCATCCT
TGTTAGAAGTAGTTTCGGGTGTGTCCGCGTTCTCGGGACCATCCAAATCA
ATTGAGTTACGTTTCTCGTCGTTTTGAGAATCCACTTTGGAGTTTTCTTT
CTTATTTAAGCCTAATGCTCTCAGCATCTGATTACGCTGTTCCATCATCA
GGGTCCGCTCGTAGGTATAAGCGGAAATATCGCTGTTGTTCATCTCAACA
ACTTCAACATCGGCCTCGATTCGAAGATGGTAGAGGAATGTCTTTAGATC
CTTCTTCATTTGAATCGAGTTGTCCTCGATTTGAGCAACTGTGAAGATCC
TTAGCTTGCAATTGCGCCAGGTGCGATGTTGCTTCAGCAGGAAGGGCAGC
AACATGAGCAGACCACCGTCGTGGACAATCCACCAGATATCAATGTTACC
ACCGATTTTGTGGTTTGATTCTGGATAGAAGTTGATGCCCTTGGGCACCA
TGAGGGCCATGTGGCAGGCGGCCACCGTGCGGACCGTTTGGATGAAGGTC
TTCCAGCTGTTCCTGCCCTCCTGTCGCCAGCTGTACGGCCATCCGATGAT
GACTGTGTTGGG
BS10247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5594-PB | 3087 | CG5594-RB | 2242..3087 | 862..17 | 4230 | 100 | Minus |
| CG5594-PA | 3132 | CG5594-RA | 2287..3132 | 862..17 | 4230 | 100 | Minus |
| CG5594-PD | 3225 | CG5594-RD | 2287..2767 | 862..382 | 2405 | 100 | Minus |
| CG5594-PC | 3180 | CG5594-RC | 2242..2722 | 862..382 | 2405 | 100 | Minus |
| CG5594-PD | 3225 | CG5594-RD | 2860..3225 | 382..17 | 1830 | 100 | Minus |
| CG5594-PC | 3180 | CG5594-RC | 2815..3180 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3528 | CG5594-RB | 2526..3375 | 862..13 | 4235 | 99.9 | Minus |
| kcc-RA | 3543 | CG5594-RA | 2541..3390 | 862..13 | 4235 | 99.9 | Minus |
| kcc-RC | 3544 | CG5594-RC | 2449..2929 | 862..382 | 2405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23922641..23922856 | 706..491 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 23922423..23922578 | 862..707 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 23924616..23924755 | 248..109 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 23924415..23924554 | 383..244 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23922921..23923030 | 491..382 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 23924818..23924913 | 108..13 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:13:23 has no hits.
BS10247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:01 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PA | 2287..3132 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:48 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PA | 2287..3132 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:06 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RA | 2541..3393 | 10..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:59 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RA | 2541..3393 | 10..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:59 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23922423..23922578 | 707..862 | 100 | -> | Minus |
| 2R | 23922641..23922856 | 491..706 | 100 | -> | Minus |
| 2R | 23922922..23923029 | 383..490 | 100 | -> | Minus |
| 2R | 23924416..23924549 | 249..382 | 100 | -> | Minus |
| 2R | 23924616..23924755 | 109..248 | 100 | -> | Minus |
| 2R | 23924818..23924916 | 10..108 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:06 Download gff for
BS10247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19809946..19810101 | 707..862 | 100 | -> | Minus |
| arm_2R | 19810164..19810379 | 491..706 | 100 | -> | Minus |
| arm_2R | 19810445..19810552 | 383..490 | 100 | -> | Minus |
| arm_2R | 19811939..19812072 | 249..382 | 100 | -> | Minus |
| arm_2R | 19812139..19812278 | 109..248 | 100 | -> | Minus |
| arm_2R | 19812341..19812439 | 10..108 | 97 | | Minus |
BS10247.5prime Sequence
892 bp (836 high quality bases) assembled on 2006-04-19
> BS10247.5prime
GAAGTTATCAGTCGACATGCAAAGTAACAGTGCAAAAGATGATTCGGATG
AAATGGAAATAATACCATCCGAACACAATGGTACAGTTCACGAAACCAAA
AATGAAGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAG
CATCGACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGCCCC
ATATATCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATACCA
GCGGCCACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGG
TACCCTAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCA
TATTGTTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGT
GGATTCCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGAT
CTCGATGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTT
ACTTCATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGA
ATGTTGTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGG
TGCCGTGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATATTTG
GGGACTTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTCTAC
GGCACTTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAA
ATTCGTCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGA
TAATAGCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAAAAG
CTATACATGTGTGTTCTGGGAAAACGACTCTTGAAGGATATC
BS10247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5594-PB | 3087 | CG5594-RB | 1..876 | 17..892 | 4380 | 100 | Plus |
| CG5594-PC | 3180 | CG5594-RC | 1..876 | 17..892 | 4380 | 100 | Plus |
| CG5594-PD | 3225 | CG5594-RD | 136..921 | 107..892 | 3930 | 100 | Plus |
| CG5594-PA | 3132 | CG5594-RA | 136..921 | 107..892 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RC | 3544 | CG5594-RC | 206..1083 | 15..892 | 4390 | 100 | Plus |
| kcc-RB | 3528 | CG5594-RB | 283..1160 | 15..892 | 4390 | 100 | Plus |
| kcc-RG | 3675 | CG5594-RG | 283..1160 | 15..892 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23911675..23911871 | 106..302 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 299..433 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 725..855 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 619..727 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 516..619 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23911459..23911551 | 15..107 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 433..516 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913122 | 856..892 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2316..2357 | 817..858 | 120 | 76.2 | Plus |
BS10247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:02 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PC | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:49 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PC | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:40 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1160 | 11..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:10 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1160 | 11..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:10 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23912897..23913026 | 726..855 | 100 | -> | Plus |
| 2R | 23913086..23913122 | 856..892 | 100 | | Plus |
| 2R | 23911455..23911551 | 11..107 | 97 | -> | Plus |
| 2R | 23911677..23911868 | 108..299 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 300..433 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 434..516 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 517..619 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 620..725 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:40 Download gff for
BS10247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19798978..19799074 | 11..107 | 97 | -> | Plus |
| arm_2R | 19799200..19799391 | 108..299 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 300..433 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 434..516 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 517..619 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 620..725 | 100 | -> | Plus |
| arm_2R | 19800420..19800549 | 726..855 | 100 | -> | Plus |
| arm_2R | 19800609..19800645 | 856..892 | 100 | | Plus |
BS10247.complete Sequence
3119 bp assembled on 2008-08-14
GenBank Submission: FJ636614
> BS10247.complete
GAAGTTATCAGTCGACATGCAAAGTAACAGTGCAAAAGATGATTCGGATG
AAATGGAAATAATACCATCCGAACACAATGGTACAGTTCACGAAACCAAA
AATGAAGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAG
CATCGACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGCCCC
ATATATCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATACCA
GCGGCCACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGG
TACCCTAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCA
TATTGTTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGT
GGATTCCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGAT
CTCGATGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTT
ACTTCATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGA
ATGTTGTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGG
TGCCGTGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATATTTG
GGGACTTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTCTAC
GGCACTTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAA
ATTCGTCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGA
TAATAGCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAAAAG
CTATACATGTGTGTTCTGGGAAAACGACTCTTGAAGGATATCCCGCTGGA
GAATTGCACAAAGGAAGACTCCTTCTTACGCGACATATACTGCCCAGATG
GTAAATGCGAGGAATACTACCTGGCCAATAACGTGACCAAAGTCAAGGGC
ATCAAGGGTTTGGCCAGTGGCGTGTTCTACGACAACATCTTCCCTTCGTT
CCTGGAGAAGGGCCAGTTCATATCCTACGGCAAGAGTGCAATTGACATTG
AGAACACTAGTGGAGAGTCATACAACCAGATCATGGCCGACATTACCACG
TCGTTCACCCTTCTTATCGGCATCTTCTTCCCATCGGTCACAGGCATCAT
GGCTGGATCCAATCGATCGGGCGACCTGGCTGACGCCCAGAAGAGCATAC
CCATCGGAACGATATGTGCCATTCTGACCACCAGCACAGTCTACTTGTCC
AGCGTTATGTTCTTCGCCGGCACAGTGGACAATCTCCTGTTGAGGGACAA
ATTCGGTCAGTCTATTGGTGGCAAGCTGGTGGTGGCCAATATTGCCTGGC
CAAATCAGTGGGTCATTCTGATTGGCTCCTTCCTCTCCACCTTGGGCGCT
GGTCTGCAGAGTTTGACTGGAGCACCCCGACTGCTGCAGGCGATTGCGAG
GGATGAGATCATCCCCTTCCTGGCTCCATTTGCCAAGTCTTCGAAGCGTG
GCGAACCCACCCGTGCGCTGCTCCTGACCATTGTCATTTGCCAGTGCGGC
ATCCTGTTGGGCAACGTGGACTTGCTGGCTCCTCTGCTGTCCATGTTCTT
CCTCATGTGCTACGGCTTTGTCAACCTGGCCTGCGCTGTGCAAACCCTGC
TGAGGACTCCCAACTGGAGACCGCGCTTCAAGTTCTACCACTGGAGCTTG
TCGCTCATCGGCCTGACGCTGTGCATATCAGTCATGATCATGACTTCCTG
GTATTTCGCACTGATTGCTATGGGAATGGCCATCATTATCTACAAATACA
TAGAGTACCGCGGTGCTGAGAAGGAGTGGGGTGATGGCATTCGTGGAATG
GCCCTGACCGCCGCCAGGTACTCGCTACTCCGTCTGGAGGAAGGCCCACC
GCATACGAAAAATTGGCGTCCCCAAATTTTGGTGCTTTCGAAGCTCAACG
ACAACCTCTTGCCAAAATACAGGAAGATATTCTCCTTTGCCACCCAGCTG
AAAGCTGGCAAGGGATTGACGATTTGTGTGTCTGTGATAAAGGGCGACCA
CACTAAGATCACTAACAAAGCCGTGGATGCGAAGGCCACGCTGCGCAAGT
ACATGACCGACGAGAAGGTGAAGGGCTTCTGTGATGTCCTGGTAGCCCAG
CAGATTGGCGAGGGCCTCAGCTCAGTCATCCAAACCATCGGACTGGGGGG
CATGAAGCCCAACACAGTCATCATCGGATGGCCGTACAGCTGGCGACAGG
AGGGCAGGAACAGCTGGAAGACCTTCATCCAAACGGTCCGCACGGTGGCC
GCCTGCCACATGGCCCTCATGGTGCCCAAGGGCATCAACTTCTATCCAGA
ATCAAACCACAAAATCGGTGGTAACATTGATATCTGGTGGATTGTCCACG
ACGGTGGTCTGCTCATGTTGCTGCCCTTCCTGCTGAAGCAACATCGCACC
TGGCGCAATTGCAAGCTAAGGATCTTCACAGTTGCTCAAATCGAGGACAA
CTCGATTCAAATGAAGAAGGATCTAAAGACATTCCTCTACCATCTTCGAA
TCGAGGCCGATGTTGAAGTTGTTGAGATGAACAACAGCGATATTTCCGCT
TATACCTACGAGCGGACCCTGATGATGGAACAGCGTAATCAGATGCTGAG
AGCATTAGGCTTAAATAAGAAAGAAAACTCCAAAGTGGATTCTCAAAACG
ACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGAGAACGCGGACACA
CCCGAAACTACTTCTAACAAGGATGAATCGACAGAGAAAGCCGACGGAGA
CTTCAAGTCCAGTGTGAAACCGGATGAGTTCAACGTTCGTCGCATGCACA
CAGCAATAAAACTAAACGAGGTTATTGTAGAAAAGTCACAGGACGCCCAG
TTGGTCATAATGAATCTACCTGGACCACCTAGGGAAGTGAGAGCGGAGCG
TGAAAGAAATTATATGGAATTTCTGGAGGTATTAACAGAGGGCCTTGAAA
AAGTGTTAATGGTTCGCGGAGGAGGCCGAGAAGTTATAACAATTTACTCT
TAAAAGCTTTCTAGACCAT
BS10247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3087 | CG5594-PB | 1..3087 | 17..3103 | 15435 | 100 | Plus |
| kcc-RA | 3132 | CG5594-PA | 136..3132 | 107..3103 | 14985 | 100 | Plus |
| kcc-RC | 3180 | CG5594-PC | 1..2722 | 17..2738 | 13610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3528 | CG5594-RB | 283..3375 | 15..3107 | 15450 | 100 | Plus |
| kcc-RA | 3543 | CG5594-RA | 390..3390 | 107..3107 | 14990 | 100 | Plus |
| kcc-RC | 3544 | CG5594-RC | 206..2929 | 15..2738 | 13620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23921964..23922327 | 1863..2226 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 23913758..23914018 | 1351..1611 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 23914078..23914331 | 1610..1863 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 23913267..23913487 | 974..1194 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 23922641..23922856 | 2414..2629 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 23911675..23911871 | 106..302 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 23922392..23922578 | 2227..2413 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23913540..23913698 | 1192..1350 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 23924616..23924755 | 2872..3011 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 23924415..23924554 | 2737..2876 | 685 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 299..433 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 725..855 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913204 | 856..974 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 23922921..23923030 | 2629..2738 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 619..727 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 516..619 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23911459..23911551 | 15..107 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 23924818..23924913 | 3012..3107 | 465 | 99 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 433..516 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2316..2357 | 817..858 | 120 | 76.2 | Plus |
BS10247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:52 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RB | 363..3462 | 11..3110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:08 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RB | 285..3369 | 17..3101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:53 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RB | 369..3453 | 17..3101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:20 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RB | 285..3369 | 17..3101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:20 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23921965..23922327 | 1864..2226 | 100 | -> | Plus |
| 2R | 23922392..23922578 | 2227..2413 | 100 | -> | Plus |
| 2R | 23922641..23922856 | 2414..2629 | 100 | -> | Plus |
| 2R | 23922922..23923029 | 2630..2737 | 100 | -> | Plus |
| 2R | 23924416..23924549 | 2738..2871 | 100 | -> | Plus |
| 2R | 23913542..23913698 | 1194..1350 | 100 | -> | Plus |
| 2R | 23924616..23924755 | 2872..3011 | 100 | -> | Plus |
| 2R | 23924818..23924907 | 3012..3101 | 100 | | Plus |
| 2R | 23913758..23914017 | 1351..1610 | 100 | -> | Plus |
| 2R | 23914079..23914331 | 1611..1863 | 100 | -> | Plus |
| 2R | 23911461..23911551 | 17..107 | 100 | -> | Plus |
| 2R | 23911677..23911868 | 108..299 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 300..433 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 434..516 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 517..619 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 620..725 | 100 | -> | Plus |
| 2R | 23912897..23913026 | 726..855 | 100 | -> | Plus |
| 2R | 23913086..23913204 | 856..974 | 100 | -> | Plus |
| 2R | 23913268..23913486 | 975..1193 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:08 Download gff for
BS10247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19800609..19800727 | 856..974 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 620..725 | 100 | -> | Plus |
| arm_2R | 19800420..19800549 | 726..855 | 100 | -> | Plus |
| arm_2R | 19809488..19809850 | 1864..2226 | 100 | -> | Plus |
| arm_2R | 19798984..19799074 | 17..107 | 100 | -> | Plus |
| arm_2R | 19799200..19799391 | 108..299 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 300..433 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 434..516 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 517..619 | 100 | -> | Plus |
| arm_2R | 19800791..19801009 | 975..1193 | 100 | -> | Plus |
| arm_2R | 19801065..19801221 | 1194..1350 | 100 | -> | Plus |
| arm_2R | 19801281..19801540 | 1351..1610 | 100 | -> | Plus |
| arm_2R | 19801602..19801854 | 1611..1863 | 100 | -> | Plus |
| arm_2R | 19809915..19810101 | 2227..2413 | 100 | -> | Plus |
| arm_2R | 19810164..19810379 | 2414..2629 | 100 | -> | Plus |
| arm_2R | 19810445..19810552 | 2630..2737 | 100 | -> | Plus |
| arm_2R | 19811939..19812072 | 2738..2871 | 100 | -> | Plus |
| arm_2R | 19812139..19812278 | 2872..3011 | 100 | -> | Plus |
| arm_2R | 19812341..19812430 | 3012..3101 | 100 | | Plus |
BS10247.pep Sequence
Translation from 16 to 3102
> BS10247.pep
MQSNSAKDDSDEMEIIPSEHNGTVHETKNEDSGDIHRAEENQKSSIDPNL
YLYDDDLETRPHISTFISSIANYENTIPAATDPDAKPAAPSARMGTLIGV
FLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLTCCCVTMLTAISMSAI
ATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGTTLAAAMYIVGAVEIV
LTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIFMGLIVFLGVKFVNKF
ATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLGKRLLKDIPLENCTKE
DSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASGVFYDNIFPSFLEKGQ
FISYGKSAIDIENTSGESYNQIMADITTSFTLLIGIFFPSVTGIMAGSNR
SGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAGTVDNLLLRDKFGQSI
GGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTGAPRLLQAIARDEIIP
FLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVDLLAPLLSMFFLMCYG
FVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTLCISVMIMTSWYFALI
AMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARYSLLRLEEGPPHTKNW
RPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLTICVSVIKGDHTKITN
KAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLSSVIQTIGLGGMKPNT
VIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALMVPKGINFYPESNHKI
GGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLRIFTVAQIEDNSIQMK
KDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTLMMEQRNQMLRALGLN
KKENSKVDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSV
KPDEFNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYM
EFLEVLTEGLEKVLMVRGGGREVITIYS*
BS10247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-PB | 1028 | CG5594-PB | 1..1028 | 1..1028 | 5328 | 100 | Plus |
| kcc-PC | 1059 | CG5594-PC | 1..1059 | 1..1028 | 5286 | 97.1 | Plus |
| kcc-PG | 1077 | CG5594-PG | 1..1077 | 1..1028 | 5268 | 95.5 | Plus |
| kcc-PA | 1043 | CG5594-PA | 20..1043 | 7..1028 | 5182 | 97.9 | Plus |
| kcc-PD | 1074 | CG5594-PD | 20..1074 | 7..1028 | 5140 | 95.1 | Plus |
