Clone Sequence Records
BS10250.3prime Sequence
879 bp (838 high quality bases) assembled on 2006-04-19
> BS10250.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCCAGCTCCAGACCCACACCGATCTTG
TGGCCGCCGGCATTGAAGTTCTTGCCATCGACCAGCGTGGACAGGGTCAG
GGTGACTCCGTCGCGCAACTTCTGCTGGTAGCCCAGACCCACCTGGCTGG
CGTTGTTCACCTTAGCGCGCACGCTGGCATCATCATCCAGCTGATACTTG
GCGCCGATGGCGAACTTGGTGTTGCTGGTGCCGCTGGCCCACGACAGCTG
TACACCCACATCCAGCTTGTCCGAAGTGCGTTGGAAGATCGAGCCGCTGA
ACTCCTGGCCATCGTTGACAGCTGTGTGCAGAACAAAGTCCTTGGTGGTG
TAGCCAAGGGCAAAGTTGTTGGTGGTCAGCTTGGACTGTTGTGTGTCAAA
TGCGGTCTGGTAGCCGGCCAACCATCCCTGGTAGCCAAGCACGGCAGAGG
CATTGATCAAGGGGCCCTTCAGATCAATGTTCACATCCGAATCGGCCTTG
ACGTTCTCATGGCCGTAGGCAACCTTGAACTTGCCGTTCTTGTTTCCAGA
CTGAGGAGCAAAGTTGCCCTCCAGGGACAGCTTCAGACCCTCGAGGAGCT
GATCCTGGACAGCAACCTCGGTGAACAGCGTGTTGTCTGTGTTCCACTTC
TCGGTGAGGGTCAGGCCGTAGTCCTTGACCTTGTACTTGGTCTCCAGGGA
GCCGAAGACCTTTCCAGACTCCTGGTTGGAGTGTCCGGCTGTGTTGAACT
CAATGCCCGACGAGGTCTTAGTCTTCAGATCGAGCTTCCACAGGCCAAAG
TTGTAGCCTTTGCTGAAGATGTCGCGAGCCTGTTTGCCCAAATCGCTGTA
TGATGGAGGAGCCATGTCGACTGATAACT
BS10250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6647-PA | 849 | porin-RA | 1..849 | 865..17 | 4245 | 100 | Minus |
CG6647-PB | 849 | porin-RB | 1..849 | 865..17 | 4245 | 100 | Minus |
CG6647-PC | 849 | porin-RC | 1..849 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RC | 2625 | CG6647-RC | 1332..2182 | 867..17 | 4255 | 100 | Minus |
porin-RE | 1387 | CG6647-RE | 96..944 | 865..17 | 4245 | 100 | Minus |
porin-RD | 1525 | CG6647-RD | 36..884 | 865..17 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10848544..10848863 | 546..865 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 10847868..10848168 | 17..317 | 1505 | 100 | Plus |
2L | 23513712 | 2L | 10848241..10848469 | 318..546 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:14:22 has no hits.
BS10250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:06 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..849 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:54 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..849 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:22 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2182 | 17..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:44 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2182 | 17..867 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:44 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847868..10848168 | 17..317 | 100 | <- | Plus |
2L | 10848241..10848468 | 318..545 | 100 | <- | Plus |
2L | 10848544..10848871 | 546..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:22 Download gff for
BS10250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10847868..10848168 | 17..317 | 100 | <- | Plus |
arm_2L | 10848241..10848468 | 318..545 | 100 | <- | Plus |
arm_2L | 10848544..10848871 | 546..873 | 99 | | Plus |
BS10250.5prime Sequence
872 bp (832 high quality bases) assembled on 2006-04-19
> BS10250.5prime
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCTAAAAGCTTT
BS10250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6647-PA | 849 | porin-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG6647-PB | 849 | porin-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
CG6647-PC | 849 | porin-RC | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RC | 2625 | CG6647-RC | 1332..2182 | 15..865 | 4255 | 100 | Plus |
porin-RE | 1387 | CG6647-RE | 96..944 | 17..865 | 4245 | 100 | Plus |
porin-RD | 1525 | CG6647-RD | 36..884 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10848544..10848863 | 336..17 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 10847868..10848168 | 865..565 | 1505 | 100 | Minus |
2L | 23513712 | 2L | 10848241..10848469 | 564..336 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:35:02 has no hits.
BS10250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:07 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:55 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:39:08 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2182 | 15..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:56 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2182 | 15..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:56 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847868..10848168 | 565..865 | 100 | <- | Minus |
2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
2L | 10848544..10848871 | 9..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:39:08 Download gff for
BS10250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
arm_2L | 10847868..10848168 | 565..865 | 100 | <- | Minus |
arm_2L | 10848544..10848871 | 9..336 | 99 | | Minus |
BS10250.complete Sequence
881 bp (881 high quality bases) assembled on 2006-03-25
> BS10250.complete
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCTAAAAGCTTTCTAGACCAT
BS10250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RE | 849 | CG6647-PE | 1..849 | 17..865 | 4245 | 100 | Plus |
porin-RD | 849 | CG6647-PD | 1..849 | 17..865 | 4245 | 100 | Plus |
porin-RC | 849 | CG6647-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RC | 2625 | CG6647-RC | 1332..2182 | 15..865 | 4255 | 100 | Plus |
porin-RE | 1387 | CG6647-RE | 96..944 | 17..865 | 4245 | 100 | Plus |
porin-RD | 1525 | CG6647-RD | 36..884 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10848544..10848863 | 336..17 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 10847868..10848168 | 865..565 | 1505 | 100 | Minus |
2L | 23513712 | 2L | 10848241..10848469 | 564..336 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:00 has no hits.
BS10250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:30 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:53 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1998..2854 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:14 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1334..2180 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:30 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1998..2854 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:46 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1334..2180 | 17..863 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:46 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847870..10848168 | 565..863 | 100 | <- | Minus |
2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
2L | 10848544..10848863 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:14 Download gff for
BS10250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10847870..10848168 | 565..863 | 100 | <- | Minus |
arm_2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
arm_2L | 10848544..10848863 | 17..336 | 100 | | Minus |
BS10250.pep Sequence
Translation from 16 to 864
> BS10250.pep
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEA*
BS10250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-PE | 282 | CG6647-PE | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PD | 282 | CG6647-PD | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PC | 282 | CG6647-PC | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PB | 282 | CG6647-PB | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PA | 282 | CG6647-PA | 1..282 | 1..282 | 1459 | 100 | Plus |