Clone BS10250 Report

Search the DGRC for BS10250

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptporin-RA
Protein status:BS10250.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10250.3prime Sequence

879 bp (838 high quality bases) assembled on 2006-04-19

> BS10250.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCCAGCTCCAGACCCACACCGATCTTG
TGGCCGCCGGCATTGAAGTTCTTGCCATCGACCAGCGTGGACAGGGTCAG
GGTGACTCCGTCGCGCAACTTCTGCTGGTAGCCCAGACCCACCTGGCTGG
CGTTGTTCACCTTAGCGCGCACGCTGGCATCATCATCCAGCTGATACTTG
GCGCCGATGGCGAACTTGGTGTTGCTGGTGCCGCTGGCCCACGACAGCTG
TACACCCACATCCAGCTTGTCCGAAGTGCGTTGGAAGATCGAGCCGCTGA
ACTCCTGGCCATCGTTGACAGCTGTGTGCAGAACAAAGTCCTTGGTGGTG
TAGCCAAGGGCAAAGTTGTTGGTGGTCAGCTTGGACTGTTGTGTGTCAAA
TGCGGTCTGGTAGCCGGCCAACCATCCCTGGTAGCCAAGCACGGCAGAGG
CATTGATCAAGGGGCCCTTCAGATCAATGTTCACATCCGAATCGGCCTTG
ACGTTCTCATGGCCGTAGGCAACCTTGAACTTGCCGTTCTTGTTTCCAGA
CTGAGGAGCAAAGTTGCCCTCCAGGGACAGCTTCAGACCCTCGAGGAGCT
GATCCTGGACAGCAACCTCGGTGAACAGCGTGTTGTCTGTGTTCCACTTC
TCGGTGAGGGTCAGGCCGTAGTCCTTGACCTTGTACTTGGTCTCCAGGGA
GCCGAAGACCTTTCCAGACTCCTGGTTGGAGTGTCCGGCTGTGTTGAACT
CAATGCCCGACGAGGTCTTAGTCTTCAGATCGAGCTTCCACAGGCCAAAG
TTGTAGCCTTTGCTGAAGATGTCGCGAGCCTGTTTGCCCAAATCGCTGTA
TGATGGAGGAGCCATGTCGACTGATAACT

BS10250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6647-PA 849 porin-RA 1..849 865..17 4245 100 Minus
CG6647-PB 849 porin-RB 1..849 865..17 4245 100 Minus
CG6647-PC 849 porin-RC 1..849 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 2625 CG6647-RC 1332..2182 867..17 4255 100 Minus
porin-RE 1387 CG6647-RE 96..944 865..17 4245 100 Minus
porin-RD 1525 CG6647-RD 36..884 865..17 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10848863 546..865 1600 100 Plus
2L 23513712 2L 10847868..10848168 17..317 1505 100 Plus
2L 23513712 2L 10848241..10848469 318..546 1145 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:14:22 has no hits.

BS10250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:06 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..849 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:54 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..849 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:22 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2182 17..867 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:44 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2182 17..867 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:44 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10847868..10848168 17..317 100 <- Plus
2L 10848241..10848468 318..545 100 <- Plus
2L 10848544..10848871 546..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:22 Download gff for BS10250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847868..10848168 17..317 100 <- Plus
arm_2L 10848241..10848468 318..545 100 <- Plus
arm_2L 10848544..10848871 546..873 99   Plus

BS10250.5prime Sequence

872 bp (832 high quality bases) assembled on 2006-04-19

> BS10250.5prime
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCTAAAAGCTTT

BS10250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6647-PA 849 porin-RA 1..849 17..865 4245 100 Plus
CG6647-PB 849 porin-RB 1..849 17..865 4245 100 Plus
CG6647-PC 849 porin-RC 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 2625 CG6647-RC 1332..2182 15..865 4255 100 Plus
porin-RE 1387 CG6647-RE 96..944 17..865 4245 100 Plus
porin-RD 1525 CG6647-RD 36..884 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10848863 336..17 1600 100 Minus
2L 23513712 2L 10847868..10848168 865..565 1505 100 Minus
2L 23513712 2L 10848241..10848469 564..336 1145 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:35:02 has no hits.

BS10250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:07 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:52:55 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:39:08 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2182 15..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:56 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2182 15..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:56 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10847868..10848168 565..865 100 <- Minus
2L 10848241..10848468 337..564 100 <- Minus
2L 10848544..10848871 9..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:39:08 Download gff for BS10250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10848241..10848468 337..564 100 <- Minus
arm_2L 10847868..10848168 565..865 100 <- Minus
arm_2L 10848544..10848871 9..336 99   Minus

BS10250.complete Sequence

881 bp (881 high quality bases) assembled on 2006-03-25

> BS10250.complete
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCTAAAAGCTTTCTAGACCAT

BS10250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RE 849 CG6647-PE 1..849 17..865 4245 100 Plus
porin-RD 849 CG6647-PD 1..849 17..865 4245 100 Plus
porin-RC 849 CG6647-PC 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 2625 CG6647-RC 1332..2182 15..865 4255 100 Plus
porin-RE 1387 CG6647-RE 96..944 17..865 4245 100 Plus
porin-RD 1525 CG6647-RD 36..884 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10848863 336..17 1600 100 Minus
2L 23513712 2L 10847868..10848168 865..565 1505 100 Minus
2L 23513712 2L 10848241..10848469 564..336 1145 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:08:00 has no hits.

BS10250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:30 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:53 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1998..2854 9..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:14 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1334..2180 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:30 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1998..2854 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:46 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1334..2180 17..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:46 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847870..10848168 565..863 100 <- Minus
2L 10848241..10848468 337..564 100 <- Minus
2L 10848544..10848863 17..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:14 Download gff for BS10250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847870..10848168 565..863 100 <- Minus
arm_2L 10848241..10848468 337..564 100 <- Minus
arm_2L 10848544..10848863 17..336 100   Minus

BS10250.pep Sequence

Translation from 16 to 864

> BS10250.pep
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEA*

BS10250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
porin-PE 282 CG6647-PE 1..282 1..282 1459 100 Plus
porin-PD 282 CG6647-PD 1..282 1..282 1459 100 Plus
porin-PC 282 CG6647-PC 1..282 1..282 1459 100 Plus
porin-PB 282 CG6647-PB 1..282 1..282 1459 100 Plus
porin-PA 282 CG6647-PA 1..282 1..282 1459 100 Plus