Clone BS10255 Report

Search the DGRC for BS10255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG6282-RA
Protein status:BS10255.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10255.3prime Sequence

892 bp (770 high quality bases) assembled on 2006-04-19

> BS10255.3prime
ATGGTCTAGAAAGCTTCTAGATGTGCGAGTGGGAGCGTGCTATGGACAGG
GAGTATGGACTGAGGTCCTTTTGAATTCGCATCGAATCGTAGATGGGGAA
CTCGCAGCACAGGATGAACTTCAAAGCACTGGGCACCTCCACGTAGACAG
CAGGAGGCACTGGTATCAGTGGCGAGGTGGAGGCTTTGTACTTCCGGTAC
TCCAGTTGATCTTTGTACTTCTCATCGGCGCTTCGTTCTCGCAGGGGAAT
CCCCGACAGAAAGAGAATGATCATCGTAGTGAAAATGGGCGAGGCAATCG
CCACCCACTCGTGGCCACTGATCACATTGAGGGATATGGCAAAGATGCCC
CACCAGATGACCACTTCGCCAAAGTAGTTCGGATGCCGCGACACGCTCCA
CAGTCCATCATTGCAGAACTTGCCCTGATTGGCCGGATCCTGGCGGAAGG
AGAACTTCTGCAGATCCGCATAGGTCTCCGCCAGCAGGCCAACGATGAAC
ATGCCCGTGCCCGTGGAGTCCAGTGTGGTCATGGTCTTTGGGGCACGCGG
CTGCGAGTGGCGCGGTGAATTAATTATTATTACAGGCAGTGACACAATGT
ACACCCAAACAGCCTGGAAGGTCCAGAAGACCGCATAGCGGATGATGTTG
CGACGGGTATCCTCGAACTGTTTGTCGCGACCCAACTTTACGATTCGATA
TAGTAAATATCCGGACAGCCGAGCGCCCCACAGGCAAACGAAGAGCGTGA
CCATCAGCTGGCGACTATCGTAGGCCTTCGATGGACGATCGATTTGGCCG
AGAAAGAAAGTGAGCAGGGAGATGATGATGAAGTTAACGCCGCCGGCAAA
GTCCGTCAGCTTGTCCATTTGGAGCACAGAGTTGATCAGAAA

BS10255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PA 951 CG6282-RA 76..951 892..17 4380 100 Minus
CG6282-PB 951 CG6282-RB 76..951 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 765..1640 892..17 4380 100 Minus
CG6282-RC 3499 CG6282-RC 961..1836 892..17 4380 100 Minus
CG6282-RB 3611 CG6282-RB 1073..1948 892..17 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 615..405 1055 100 Minus
3L 28110227 3L 8614867..8615063 406..210 985 100 Minus
3L 28110227 3L 8615219..8615411 209..17 965 100 Minus
3L 28110227 3L 8613656..8613820 777..613 825 100 Minus
3L 28110227 3L 8610240..8610357 892..775 590 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:37:40 has no hits.

BS10255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:13 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PA 79..951 17..889 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:02 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PB 79..951 17..889 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:06 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1076..1951 14..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:51 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1076..1951 14..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:51 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8613658..8613819 614..775 100 -> Minus
3L 8610243..8610356 776..889 100 -> Minus
3L 8614602..8614809 406..613 100 -> Minus
3L 8614868..8615063 210..405 100 -> Minus
3L 8615219..8615414 14..209 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:06 Download gff for BS10255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8607968..8608163 210..405 100 -> Minus
arm_3L 8608319..8608514 14..209 99   Minus
arm_3L 8603343..8603456 776..889 100 -> Minus
arm_3L 8606758..8606919 614..775 100 -> Minus
arm_3L 8607702..8607909 406..613 100 -> Minus

BS10255.5prime Sequence

921 bp (878 high quality bases) assembled on 2006-04-19

> BS10255.5prime
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAAGGACT

BS10255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PA 951 CG6282-RA 1..899 17..915 4495 100 Plus
CG6282-PB 951 CG6282-RB 1..899 17..915 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 690..1588 17..915 4495 100 Plus
CG6282-RC 3499 CG6282-RC 886..1784 17..915 4495 100 Plus
CG6282-RB 3611 CG6282-RB 998..1896 17..915 4495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 369..579 1055 100 Plus
3L 28110227 3L 8614867..8615063 578..774 985 100 Plus
3L 28110227 3L 8610165..8610357 17..209 965 100 Plus
3L 28110227 3L 8613656..8613820 207..371 825 100 Plus
3L 28110227 3L 8615219..8615359 775..915 705 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:42:03 has no hits.

BS10255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:14 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PA 1..903 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:03 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PB 1..903 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:46:20 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1900 9..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:32 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1900 9..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:32 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8610158..8610356 9..208 98 -> Plus
3L 8613658..8613819 209..370 100 -> Plus
3L 8614602..8614809 371..578 100 -> Plus
3L 8614868..8615063 579..774 100 -> Plus
3L 8615219..8615363 775..921 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:46:20 Download gff for BS10255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8603258..8603456 9..208 98 -> Plus
arm_3L 8606758..8606919 209..370 100 -> Plus
arm_3L 8607702..8607909 371..578 100 -> Plus
arm_3L 8607968..8608163 579..774 100 -> Plus
arm_3L 8608319..8608463 775..921 98   Plus

BS10255.complete Sequence

983 bp (983 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636615

> BS10255.complete
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAGGACCTCAGTCCATACTCCCTGTCCATAGCACGCT
CCCACTCGCACATCTAGAAGCTTTCTAGACCAT

BS10255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 1440 CG6282-PD 1..951 17..967 4755 100 Plus
CG6282-RC 951 CG6282-PC 1..951 17..967 4755 100 Plus
CG6282-RB 951 CG6282-PB 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 690..1640 17..967 4755 100 Plus
CG6282-RC 3499 CG6282-RC 886..1836 17..967 4755 100 Plus
CG6282-RB 3611 CG6282-RB 998..1948 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 369..579 1055 100 Plus
3L 28110227 3L 8614867..8615063 578..774 985 100 Plus
3L 28110227 3L 8610165..8610357 17..209 965 100 Plus
3L 28110227 3L 8615219..8615411 775..967 965 100 Plus
3L 28110227 3L 8613656..8613820 207..371 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:39:44 has no hits.

BS10255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:35 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:13 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RC 879..1839 9..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:50 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 998..1948 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:36 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1951 9..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:39 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 998..1948 17..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:39 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8614602..8614809 371..578 100 -> Plus
3L 8614868..8615063 579..774 100 -> Plus
3L 8615219..8615411 775..967 100   Plus
3L 8610165..8610356 17..208 100 -> Plus
3L 8613658..8613819 209..370 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:50 Download gff for BS10255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8603265..8603456 17..208 100 -> Plus
arm_3L 8606758..8606919 209..370 100 -> Plus
arm_3L 8607702..8607909 371..578 100 -> Plus
arm_3L 8607968..8608163 579..774 100 -> Plus
arm_3L 8608319..8608511 775..967 100   Plus

BS10255.pep Sequence

Translation from 16 to 966

> BS10255.pep
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHI*

BS10255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PC 316 CG6282-PC 1..316 1..316 1643 100 Plus
CG6282-PB 316 CG6282-PB 1..316 1..316 1643 100 Plus
CG6282-PA 316 CG6282-PA 1..316 1..316 1643 100 Plus
CG6282-PD 479 CG6282-PD 1..316 1..316 1643 100 Plus