Clone Sequence Records
BS10255.3prime Sequence
892 bp (770 high quality bases) assembled on 2006-04-19
> BS10255.3prime
ATGGTCTAGAAAGCTTCTAGATGTGCGAGTGGGAGCGTGCTATGGACAGG
GAGTATGGACTGAGGTCCTTTTGAATTCGCATCGAATCGTAGATGGGGAA
CTCGCAGCACAGGATGAACTTCAAAGCACTGGGCACCTCCACGTAGACAG
CAGGAGGCACTGGTATCAGTGGCGAGGTGGAGGCTTTGTACTTCCGGTAC
TCCAGTTGATCTTTGTACTTCTCATCGGCGCTTCGTTCTCGCAGGGGAAT
CCCCGACAGAAAGAGAATGATCATCGTAGTGAAAATGGGCGAGGCAATCG
CCACCCACTCGTGGCCACTGATCACATTGAGGGATATGGCAAAGATGCCC
CACCAGATGACCACTTCGCCAAAGTAGTTCGGATGCCGCGACACGCTCCA
CAGTCCATCATTGCAGAACTTGCCCTGATTGGCCGGATCCTGGCGGAAGG
AGAACTTCTGCAGATCCGCATAGGTCTCCGCCAGCAGGCCAACGATGAAC
ATGCCCGTGCCCGTGGAGTCCAGTGTGGTCATGGTCTTTGGGGCACGCGG
CTGCGAGTGGCGCGGTGAATTAATTATTATTACAGGCAGTGACACAATGT
ACACCCAAACAGCCTGGAAGGTCCAGAAGACCGCATAGCGGATGATGTTG
CGACGGGTATCCTCGAACTGTTTGTCGCGACCCAACTTTACGATTCGATA
TAGTAAATATCCGGACAGCCGAGCGCCCCACAGGCAAACGAAGAGCGTGA
CCATCAGCTGGCGACTATCGTAGGCCTTCGATGGACGATCGATTTGGCCG
AGAAAGAAAGTGAGCAGGGAGATGATGATGAAGTTAACGCCGCCGGCAAA
GTCCGTCAGCTTGTCCATTTGGAGCACAGAGTTGATCAGAAA
BS10255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PA | 951 | CG6282-RA | 76..951 | 892..17 | 4380 | 100 | Minus |
CG6282-PB | 951 | CG6282-RB | 76..951 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 765..1640 | 892..17 | 4380 | 100 | Minus |
CG6282-RC | 3499 | CG6282-RC | 961..1836 | 892..17 | 4380 | 100 | Minus |
CG6282-RB | 3611 | CG6282-RB | 1073..1948 | 892..17 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 615..405 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 8614867..8615063 | 406..210 | 985 | 100 | Minus |
3L | 28110227 | 3L | 8615219..8615411 | 209..17 | 965 | 100 | Minus |
3L | 28110227 | 3L | 8613656..8613820 | 777..613 | 825 | 100 | Minus |
3L | 28110227 | 3L | 8610240..8610357 | 892..775 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:37:40 has no hits.
BS10255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:13 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PA | 79..951 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:02 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PB | 79..951 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:06 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1076..1951 | 14..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:51 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1076..1951 | 14..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:51 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8613658..8613819 | 614..775 | 100 | -> | Minus |
3L | 8610243..8610356 | 776..889 | 100 | -> | Minus |
3L | 8614602..8614809 | 406..613 | 100 | -> | Minus |
3L | 8614868..8615063 | 210..405 | 100 | -> | Minus |
3L | 8615219..8615414 | 14..209 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:06 Download gff for
BS10255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8607968..8608163 | 210..405 | 100 | -> | Minus |
arm_3L | 8608319..8608514 | 14..209 | 99 | | Minus |
arm_3L | 8603343..8603456 | 776..889 | 100 | -> | Minus |
arm_3L | 8606758..8606919 | 614..775 | 100 | -> | Minus |
arm_3L | 8607702..8607909 | 406..613 | 100 | -> | Minus |
BS10255.5prime Sequence
921 bp (878 high quality bases) assembled on 2006-04-19
> BS10255.5prime
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAAGGACT
BS10255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PA | 951 | CG6282-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
CG6282-PB | 951 | CG6282-RB | 1..899 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 690..1588 | 17..915 | 4495 | 100 | Plus |
CG6282-RC | 3499 | CG6282-RC | 886..1784 | 17..915 | 4495 | 100 | Plus |
CG6282-RB | 3611 | CG6282-RB | 998..1896 | 17..915 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 369..579 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 8614867..8615063 | 578..774 | 985 | 100 | Plus |
3L | 28110227 | 3L | 8610165..8610357 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 8613656..8613820 | 207..371 | 825 | 100 | Plus |
3L | 28110227 | 3L | 8615219..8615359 | 775..915 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:42:03 has no hits.
BS10255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:14 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PA | 1..903 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:03 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PB | 1..903 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:46:20 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1900 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:32 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1900 | 9..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:32 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8610158..8610356 | 9..208 | 98 | -> | Plus |
3L | 8613658..8613819 | 209..370 | 100 | -> | Plus |
3L | 8614602..8614809 | 371..578 | 100 | -> | Plus |
3L | 8614868..8615063 | 579..774 | 100 | -> | Plus |
3L | 8615219..8615363 | 775..921 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:46:20 Download gff for
BS10255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8603258..8603456 | 9..208 | 98 | -> | Plus |
arm_3L | 8606758..8606919 | 209..370 | 100 | -> | Plus |
arm_3L | 8607702..8607909 | 371..578 | 100 | -> | Plus |
arm_3L | 8607968..8608163 | 579..774 | 100 | -> | Plus |
arm_3L | 8608319..8608463 | 775..921 | 98 | | Plus |
BS10255.complete Sequence
983 bp (983 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636615
> BS10255.complete
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAGGACCTCAGTCCATACTCCCTGTCCATAGCACGCT
CCCACTCGCACATCTAGAAGCTTTCTAGACCAT
BS10255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 1440 | CG6282-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
CG6282-RC | 951 | CG6282-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
CG6282-RB | 951 | CG6282-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 690..1640 | 17..967 | 4755 | 100 | Plus |
CG6282-RC | 3499 | CG6282-RC | 886..1836 | 17..967 | 4755 | 100 | Plus |
CG6282-RB | 3611 | CG6282-RB | 998..1948 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 369..579 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 8614867..8615063 | 578..774 | 985 | 100 | Plus |
3L | 28110227 | 3L | 8610165..8610357 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 8615219..8615411 | 775..967 | 965 | 100 | Plus |
3L | 28110227 | 3L | 8613656..8613820 | 207..371 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:44 has no hits.
BS10255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:35 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:13 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RC | 879..1839 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:50 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 998..1948 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:36 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1951 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:39 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 998..1948 | 17..967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:39 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8614602..8614809 | 371..578 | 100 | -> | Plus |
3L | 8614868..8615063 | 579..774 | 100 | -> | Plus |
3L | 8615219..8615411 | 775..967 | 100 | | Plus |
3L | 8610165..8610356 | 17..208 | 100 | -> | Plus |
3L | 8613658..8613819 | 209..370 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:50 Download gff for
BS10255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8603265..8603456 | 17..208 | 100 | -> | Plus |
arm_3L | 8606758..8606919 | 209..370 | 100 | -> | Plus |
arm_3L | 8607702..8607909 | 371..578 | 100 | -> | Plus |
arm_3L | 8607968..8608163 | 579..774 | 100 | -> | Plus |
arm_3L | 8608319..8608511 | 775..967 | 100 | | Plus |
BS10255.pep Sequence
Translation from 16 to 966
> BS10255.pep
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHI*
BS10255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PC | 316 | CG6282-PC | 1..316 | 1..316 | 1643 | 100 | Plus |
CG6282-PB | 316 | CG6282-PB | 1..316 | 1..316 | 1643 | 100 | Plus |
CG6282-PA | 316 | CG6282-PA | 1..316 | 1..316 | 1643 | 100 | Plus |
CG6282-PD | 479 | CG6282-PD | 1..316 | 1..316 | 1643 | 100 | Plus |