Clone BS10256 Report

Search the DGRC for BS10256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptPpi1-RA
Protein status:BS10256.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10256.3prime Sequence

984 bp (889 high quality bases) assembled on 2006-04-19

> BS10256.3prime
ATGGTCTAGAAAGCTTTCAGTTGATGGAAATGTCGGAGGAGTGGGGTCCG
AGGGTGGGGTCGAACCGGACCATCTTCTTCGTTCTCCGCTTAACCCTTAA
CCGCTTCCGCTCATTGGCCATTTCCCGGGACCAGGGCTGCTGGCGCTGTG
GAGCTGTGGGTGGATAGGCGGCTTGATCCAGGAGGCGCATGTGGTCGCCA
GTCAGTGGAAGTTCCGAGTCGGTACTATAGCTGGGAGGATTACAAATCGG
CCTTATCTCCCGGTCCTTAGTTTGGATGGTGGTATTATTGACTCGGCTGT
AGACACAGGAATCCTGATGATCCTGTCCCGAGAAACCACCAGCAACGCGA
CCGGGGACCGGCTTCTTCTTCTTGGGCTTCTTTGGAATGTTCCTCATCTT
GGGCGGCTTGGGCTCCTCCTGGATTACGCCCTTTCCATAGATCCAATTGA
ATGGCTTCTCTCGCTCACCCATCACACAGCTCTCGTACTGGACTGTGGCG
TCGGGCATATGGGGATATAGGCTCGGATTGACCCAGTCACTCTCGTTGTA
CTGCGTCTCGGTGTGCTTCACATGGGAGCTCTTCAGTCGCTCTGGACGCA
TTAAGCCCGCCGGCGGAGTGACCCCGAAGTCGAACTCATCCTCGCTGTCG
GAGGTGTCCGTTAGAACGAGCTCATCCTCGCAGGAATCTATCTTCCGGCG
CTCGCACTCCCTCCGCACATGGTACAGCAGCCGCTTTTTGTCCACGAAAC
TGCGGCAGTAGCAGTTCATCAGCGGTTTGTGGCAAGAGCACTTGCTGAAT
CCCATTCCCTTGAGGCAGCGCTTCAAATCGCGAATTTCCTTCAGCAGCGG
ATTCTTGACGATCCGAAACTGAACGGGCTTCATTCTCACGTAGGGATTGG
CGGAGCGAGCGAGCGTCTTGGCATCTTTGAAAGGACGCAGGGGTATGGTG
TACACATCGTTTCTTCTTTCAATGTGCAGCGTGG

BS10256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31025-PB 2229 CG31025-RB 1285..2229 961..17 4625 99.5 Minus
CG31025-PA 2997 CG31025-RA 2053..2997 961..17 4625 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 2211..3178 984..17 4735 99.4 Minus
Ppi1-RB 3376 CG31025-RB 2277..3244 984..17 4735 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30125765..30126732 17..984 4720 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 18:30:54 has no hits.

BS10256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:15 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PB 1262..2229 17..984 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:05 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 2030..2997 17..984 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:13 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RB 2277..3248 9..984 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:16 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RB 2277..3248 9..984 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:16 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30125761..30126732 9..984 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:13 Download gff for BS10256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25951483..25952454 9..984 98   Plus

BS10256.5prime Sequence

976 bp (878 high quality bases) assembled on 2006-04-19

> BS10256.5prime
GAAGTTATCAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGG
AGAAGAAGGAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTAC
AAGAACCGCGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTA
CATGCACTGCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACA
AGAAGGGTAAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGG
GAAGAGGTATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCC
CAACAGGGACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGC
TCAACATGCCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAG
GCAAACGTGTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAA
TGTCAACTGTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCG
AGTGCCTGCAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTAT
CTGCGCAAGGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGT
CAGTCGCATGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGG
AGCTAACCTGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCC
ATGCAGATGCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATT
GGCGGGCGGCCAGGAGCGGGGGTGTTTTCCGAACATGAATGTGGATCTCC
AGGACCTCTCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTTC
ATGCCCAGTGATACGGAGGTAGCGCAGGATTCCCCCTCCTTGCAGTGAGG
ATAGGGCGCAGGATTCTTTTTCATGTCAGGATTCCCCACCTCGCTGATCG
ACATGGCGGGTCCCTATCCCGTGTAC

BS10256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31025-PA 2997 CG31025-RA 1..869 17..885 4345 100 Plus
CG31025-PB 2229 CG31025-RB 1..101 785..885 505 100 Plus
CG31025-PA 2997 CG31025-RA 866..927 883..944 260 96.7 Plus
CG31025-PB 2229 CG31025-RB 98..159 883..944 260 96.7 Plus
CG31025-PA 2997 CG31025-RA 928..960 944..976 165 100 Plus
CG31025-PB 2229 CG31025-RB 160..192 944..976 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 182..1141 17..976 4725 99.6 Plus
Ppi1-RB 3376 CG31025-RB 182..894 17..729 3565 100 Plus
Ppi1-RB 3376 CG31025-RB 961..1207 730..976 1160 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30128389..30128938 566..17 2750 100 Minus
3R 32079331 3R 30127900..30128099 930..730 925 98.5 Minus
3R 32079331 3R 30128166..30128329 729..566 820 100 Minus
3R 32079331 3R 30127802..30127851 976..928 200 98 Minus
Blast to na_te.dros performed on 2015-02-13 00:42:18 has no hits.

BS10256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:17 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 1..960 17..976 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:07 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 1..960 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:43 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 178..1141 9..976 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:01 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 178..1141 9..976 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:01 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30127802..30127849 930..976 97 <- Minus
3R 30127901..30128099 730..929 98 <- Minus
3R 30128166..30128328 567..729 100 <- Minus
3R 30128389..30128942 9..566 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:43 Download gff for BS10256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25953524..25953571 930..976 97 <- Minus
arm_3R 25953623..25953821 730..929 98 <- Minus
arm_3R 25953888..25954050 567..729 100 <- Minus
arm_3R 25954111..25954664 9..566 99   Minus

BS10256.complete Sequence

3029 bp assembled on 2007-11-30

GenBank Submission: FJ636616

> BS10256.complete
GAAGTTATCAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGG
AGAAGAAGGAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTAC
AAGAACCGCGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTA
CATGCACTGCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACA
AGAAGGGTAAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGG
GAAGAGGTATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCC
CAACAGGGACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGC
TCAACATGCCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAG
GCAAACGTGTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAA
TGTCAACTGTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCG
AGTGCCTGCAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTAT
CTGCGCAAGGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGT
CAGTCGCATGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGG
AGCTAACCTGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCC
ATGCAGATGCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATT
GGCGGGCGGCCAGGAGCGGGGGTGTTTTCCGAACATGAATGTGGATCTCC
AGGACCTCTCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTTC
ATGCCCAGTGATACGGAGGTAGCGCAGGATTCCCCTCCTTGCAGTGAGGA
TAGGGCGCAGGATTCTTTTCAATGTCAGGATTCCCCACCTCGCCTGATCG
ACATGGCGGGTCCCTATCCCGTGTACTCCTGTCCCAACGTGGACGACGAT
TGTGTGACCTTCGAGCCCCCGGCGGGTCCTGCCACTCAGTTCTCCTCCTG
CCAAAAGAACGTTCTAGGTGAGGGAAATGCGAACCGCTTGTGCCAGAAGC
ATTCCTCGCCAAGACTGCGACAGATGCACATCAGCAACACCCGATCCTGC
GTCCTTTGCGGCGAGGATGTCTCCTGGTTACCCAAGGTGGCCGCTTGTCC
TTGCTGTGGCTATAAACCAGTGCCGGAGTTCAAGGAGCGACCCTACGACG
AGCAGGCCACTGCCCAACAGATTCTGCTGGACCATCTGGAAAATCCTGTG
GAGAATCTCAGCTTTGATATGGGATCGGTCGAAGGCTGTTCGGCGAATGA
AGAACATGGTGTTCCAGAACCCACCTCGGAAGCCTTTGAAGCAATTGTGA
AGGACTACCAGCTTCTGAGGCGCAGCATTCGCGAGTCCAACACCAAAGCC
ACCCAGTCGGCCACCAAAAATCCCACTGCTCAAGAAGGTTCAGCTCAGCC
GCAAGACTTGGCCAAGGTGTTTACGGAGCTGAGAGATCTGTTCAATGTTA
AAGCCGCGGATGAGAACCAGAAGATCCAGGACATCTGCGCGGAGGCCTGT
GCCCTTGCTAAGTCGCACAAAAAGAGCAAAAATCGTCCTGCATCGCCGGA
AAGGACAAAGGCTGGCAAGACGGACCCTGTGGAGGATGCCTGCGAAACAC
CGCGGAAGATGAAGAAGCGTCGCCCGAAGGTCAAACGTCCCTATAAGTCG
AGGTACTACTCAATGTATCGCCCCACGGAGAGGCCCAAGGCAAATGTAGC
CATCCCGGATGCAGACAAAAAAGTTCCCAGCCACATGGGTTGGTTGTGGA
CCGCTCATCCACTAGCCAACAAGCCTGGCTGGCGACCCGGAGCCATTCGA
CGTTCCATTCGCGGTCTAATGAGTTACTTCCTTAAGGACTTTCCCGTGGA
TAACGTGCCCGTGTCGAAGTACATGTCATACTACAAGCATAAGATGTCGC
CGATGTCTCCACCGGGTGAGAAGGCGGAGGATTTGGTGCAGGTGCCCACG
CTGCACATTGAAAAGAAGAACGATGTGTACACCATTACCCTGCGTCCTCT
CAAGGATGCCAAGACGCTCGCTCGCTCCGCCAATCCCTACGTGAGAATGA
AGCCCGTTCAGTTTCGGATCGTCAAGAATCCGCTGCTGAAGGAAATTCGC
GATTTGAAGCGCTGCCTCAAGGGAATGGGATTCAGCAAGTGCTCTTGCCA
CAAACCGCTGATGAACTGCTACTGCCGCAGTTTCGTGGACAAAAAGCGGC
TGCTGTACCATGTGCGGAGGGAGTGCGAGCGCCGGAAGATAGATTCCTGC
GAGGATGAGCTCGTTCTAACGGACACCTCCGACAGCGAGGATGAGTTCGA
CTTCGGGGTCACTCCGCCGGCGGGCTTAATGCGTCCAGAGCGACTGAAGA
GCTCCCATGTGAAGCACACCGAGACGCAGTACAACGAGAGTGACTGGGTC
AATCCGAGCCTATATCCCCATATGCCCGACGCCACAGTCCAGTACGAGAG
CTGTGTGATGGGTGAGCGAGAGAAGCCATTCAATTGGATCTATGGAAAGG
GCGTAATCCAGGAGGAGCCCAAGCCGCCCAAGATGAGGAACATTCCAAAG
AAGCCCAAGAAGAAGAAGCCGGTCCCCGGTCGCGTTGCTGGTGGTTTCTC
GGGACAGGATCATCAGGATTCCTGTGTCTACAGCCGAGTCAATAATACCA
CCATCCAAACTAAGGACCGGGAGATAAGGCCGATTTGTAATCCTCCCAGC
TATAGTACCGACTCGGAACTTCCACTGACTGGCGACCACATGCGCCTCCT
GGATCAAGCCGCCTATCCACCCACAGCTCCACAGCGCCAGCAGCCCTGGT
CCCGGGAAATGGCCAATGAGCGGAAGCGGTTAAGGGTTAAGCGGAGAACG
AAGAAGATGGTCCGGTTCGACCCCACCCTCGGACCCCACTCCTCCGACAT
TTCCATCAACTGAAAGCTTTCTAGACCAT

BS10256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 2997 CG31025-PA 1..2997 17..3013 14985 100 Plus
Ppi1-RB 2229 CG31025-PB 1..2229 785..3013 11145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 182..3178 17..3013 14985 100 Plus
Ppi1-RB 3376 CG31025-RB 961..3244 730..3013 11420 100 Plus
Ppi1-RB 3376 CG31025-RB 182..894 17..729 3565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30125765..30127851 3013..927 10435 100 Minus
3R 32079331 3R 30128389..30128938 566..17 2750 100 Minus
3R 32079331 3R 30127900..30128099 929..730 1000 100 Minus
3R 32079331 3R 30128166..30128329 729..566 820 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:35:37 has no hits.

BS10256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:36 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 1..2997 17..3013 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:55 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 178..3182 9..3021 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:52 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 182..3177 17..3012 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:53 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 182..3177 17..3012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:14 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 182..3177 17..3012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:14 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30125766..30127849 929..3012 100 <- Minus
3R 30127901..30128099 730..928 100 <- Minus
3R 30128166..30128328 567..729 100 <- Minus
3R 30128389..30128938 17..566 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:52 Download gff for BS10256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25951488..25953571 929..3012 100 <- Minus
arm_3R 25953623..25953821 730..928 100 <- Minus
arm_3R 25953888..25954050 567..729 100 <- Minus
arm_3R 25954111..25954660 17..566 100   Minus

BS10256.pep Sequence

Translation from 16 to 3012

> BS10256.pep
MEKYECKPEPVEKKEKPVEELMNWDAYYKNRGLVSTRLGSCKADYMHCST
YQEKGNAQEKDKKGKGACCCSSCPVRNREEVYQPRCPAPGQKGKPNRDYM
RCFAAKLIVQKLNMPGRDFECQDKLQIKANVCRGCKICLGSSSINVNCLP
LNPDKTFQMEAECLQRQLAEGINISVVYLRKEIARGCYFPPAAVVSRMIN
DFDEIVHDANVELTCKGCTVGIMNIRFAMQMRCQTLKEDAVDGRLAGGQE
RGCFPNMNVDLQDLSFMSTSSIDPCVGFMPSDTEVAQDSPPCSEDRAQDS
FQCQDSPPRLIDMAGPYPVYSCPNVDDDCVTFEPPAGPATQFSSCQKNVL
GEGNANRLCQKHSSPRLRQMHISNTRSCVLCGEDVSWLPKVAACPCCGYK
PVPEFKERPYDEQATAQQILLDHLENPVENLSFDMGSVEGCSANEEHGVP
EPTSEAFEAIVKDYQLLRRSIRESNTKATQSATKNPTAQEGSAQPQDLAK
VFTELRDLFNVKAADENQKIQDICAEACALAKSHKKSKNRPASPERTKAG
KTDPVEDACETPRKMKKRRPKVKRPYKSRYYSMYRPTERPKANVAIPDAD
KKVPSHMGWLWTAHPLANKPGWRPGAIRRSIRGLMSYFLKDFPVDNVPVS
KYMSYYKHKMSPMSPPGEKAEDLVQVPTLHIEKKNDVYTITLRPLKDAKT
LARSANPYVRMKPVQFRIVKNPLLKEIRDLKRCLKGMGFSKCSCHKPLMN
CYCRSFVDKKRLLYHVRRECERRKIDSCEDELVLTDTSDSEDEFDFGVTP
PAGLMRPERLKSSHVKHTETQYNESDWVNPSLYPHMPDATVQYESCVMGE
REKPFNWIYGKGVIQEEPKPPKMRNIPKKPKKKKPVPGRVAGGFSGQDHQ
DSCVYSRVNNTTIQTKDREIRPICNPPSYSTDSELPLTGDHMRLLDQAAY
PPTAPQRQQPWSREMANERKRLRVKRRTKKMVRFDPTLGPHSSDISIN*

BS10256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-PA 998 CG31025-PA 1..998 1..998 5409 100 Plus
Ppi1-PB 742 CG31025-PB 1..742 257..998 4008 100 Plus
CG31029-PA 905 CG31029-PA 328..886 365..894 961 38.1 Plus
CG14355-PA 1024 CG14355-PA 16..791 83..851 600 27.6 Plus
CG31533-PA 844 CG31533-PA 320..761 376..851 424 29.9 Plus