Clone Sequence Records
BS10257.3prime Sequence
894 bp (836 high quality bases) assembled on 2006-04-19
> BS10257.3prime
ATGGTCTAGAAAGCTTTTATATGTCATCGATTTCATCGGATGAAATATAG
TCCTCGCCGAGTCTTTCGTCTAGCGAGAGAAGCAATTCGATGGCTTTGAT
CAACTGCTTTTCATATCCGTTCTCCTCGATCGGGGCCGGATACAAAGCCT
TTTTGAGCAGCAGTTTCTCCAAATTGCTTCTTAATTGTATGACTACGTCG
GCAGTTTCACGATTGCATTTAAAGTAATATGTCTTGGCCACGCACAGATA
TGGCGTATTTTGGGTCACTCCCGCTTCCACGCCATCTCCGAAAATGATCA
GTGCCATGGGAAAAACCATTGTGGAGTCGAGCAGGAAAAGATCGGTGGAC
TTCTGCCGCTGAAAGTAGACAAAGTATGCCGAGTCGAAGCCACTCTCTCC
GCTGTTCACCGAGGAGGGATGAAAGTTAACGCGGCGTCCATCGTCCGTTG
CCATGGTGTGGATAGCGCGTACTCTATTCTTGATCTGCCGTGATTTTCGC
AAGTGAGCCATGTTGGGATAGAGTCCCGCTCCTATAATGGCCCTCAGTAG
GGGAATCTTCTCAGAATTCTTATTGGATGCAGCATCCTTGCAGTTTGACG
ATGCCAGAAATTTGTAGTTGTAGAGCAGCTCACTGAACTGATTCTTCATC
CTCTCCAACTGCTGCAGTGTCATGGAGCTGAGGAAATTCTTATAGCAGAA
GTCTCGTTCCGCGTGCGAATAGCGGCTATCGCGGTACGCAATAATGGTAT
TGTGCACCATCAGGTGATCGCTCCGCATATTTCGGGCCATTCTCCGCTTG
ATTTCATCCACTCGGCTCTCTTTACCCAAAGGCGAGTAGAAGGGGGACTT
AAAGGACAAGGCAGCCGCCGCCGAAGTGATGGGATCCAGCAACA
BS10257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PA | 2829 | CG9323-RA | 1958..2829 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 2154..3032 | 894..17 | 4370 | 99.9 | Minus |
CG9323-RA | 3019 | CG9323-RA | 2048..2926 | 894..17 | 4370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20755488..20755764 | 612..888 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 20754993..20755266 | 225..498 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 20754809..20754937 | 96..224 | 645 | 100 | Plus |
2L | 23513712 | 2L | 20755320..20755433 | 498..611 | 570 | 100 | Plus |
2L | 23513712 | 2L | 20754672..20754750 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:17:33 has no hits.
BS10257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:18 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1952..2829 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:09 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1952..2829 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:45:10 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 2049..2929 | 12..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:49 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 2049..2929 | 12..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:49 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754669..20754750 | 12..95 | 96 | <- | Plus |
2L | 20754809..20754937 | 96..224 | 100 | <- | Plus |
2L | 20754993..20755265 | 225..497 | 100 | <- | Plus |
2L | 20755320..20755433 | 498..611 | 100 | <- | Plus |
2L | 20755488..20755770 | 612..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:45:10 Download gff for
BS10257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20754669..20754750 | 12..95 | 96 | <- | Plus |
arm_2L | 20754809..20754937 | 96..224 | 100 | <- | Plus |
arm_2L | 20754993..20755265 | 225..497 | 100 | <- | Plus |
arm_2L | 20755320..20755433 | 498..611 | 100 | <- | Plus |
arm_2L | 20755488..20755770 | 612..893 | 99 | | Plus |
BS10257.5prime Sequence
890 bp (741 high quality bases) assembled on 2006-04-19
> BS10257.5prime
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCANGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGG
BS10257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PA | 2829 | CG9323-RA | 1..874 | 17..890 | 4351 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 204..1077 | 17..890 | 4359 | 99.9 | Plus |
CG9323-RA | 3019 | CG9323-RA | 98..971 | 17..890 | 4359 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20756909..20757782 | 890..17 | 4359 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:58 has no hits.
BS10257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:19 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:10 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:02 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 94..971 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:39 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 94..971 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:39 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20756909..20757786 | 9..890 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:02 Download gff for
BS10257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20756909..20757786 | 9..890 | 99 | | Minus |
BS10257.complete Sequence
2861 bp assembled on 2007-11-30
GenBank Submission: FJ636617
> BS10257.complete
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGTCTTCTAAA
GGTTATCCTGCCCCACAGACCCGATCTAAAGGTGATCCTGATGAGTGCAA
CTGTACGGGAGCAGGATTTTTGTGACTACTTTAACAACTGTCCCATGTTC
CGCATCGAGGGCGTGATGTTTCCCGTGAAGATGCTCTACTTGGAGGATGT
TCTGTCCAAGACGAACTACGAGTTCCAAAAGTTCCGCGATCGTCGTCCCA
AGCGGGATCCGCCTGAGCGCAGGATGAAGCACGAGGCTATGATAGAACCG
TATCTGCGACGCATCAGGAACTCGTACGATAGTCGTGTGCTCGACAAGCT
GCGTTTGCCGGAGTCGGAGGGCTGCGAGGATATTGATTTTATAGCCGATT
TGGTTTACTACATATGCGAAAACGAACCAGAGGGTGCCATATTAGTGTTC
CTGCCTGGTTATGATAAGATCTCCCAACTGTACAATATTCTGGATAAACC
AAAGACTTCGAAGGGCCAAAGGTGGCGGGATCATATGGCCGTATTTCCAT
TACATTCCCTAATGCAGTCAGGGGAACAGCAGGCAGTGTTCAGGCGACCA
CCGGCGGGCCAGCGTAAGGTTATAATCTCTACAATTATCGCCGAAACGTC
GGTGACTATTGACGACGTGGTTTATGTGATAAACTCTGGCCGGACGAAAG
CCACCAACTATGACATCGAAACGAACATACAGTCGCTGGATGAGGTTTGG
GTGACCAAAGCAAATACCCAGCAGCGGAGAGGCAGGGCAGGTCGAGTGCG
CCCGGGCATATGCTATAATCTGTTCTCCCGCGCTAGAGAGGATCGCATGG
ACGATATTCCGACGCCGGAGATACTACGCTCCAAGCTGGAATCCATAATT
TTAAGCCTCAAGCTACTGCACATCGACGATCCGTATCGGTTCCTGCAAAC
TCTTATTAATGCCCCCAATCCCGAGGCCATAAAGATGGGAGTGGAACTGC
TAAAGCGCATTGAGGCGTTGGACCAGACGGGCACCCTTACTCCACTGGGC
ATGCACTTGGCAAAGCTGCCCATTGATCCGCAGATGGGAAAAATGATCCT
GATGTCGGCGCTCTTCTGTTGCTTGGATCCCATCACTTCGGCGGCGGCTG
CCTTGTCCTTTAAGTCCCCCTTCTACTCGCCTTTGGGTAAAGAGAGCCGA
GTGGATGAAATCAAGCGGAGAATGGCCCGAAATATGCGGAGCGATCACCT
GATGGTGCACAATACCATTATTGCGTACCGCGATAGCCGCTATTCGCACG
CGGAACGAGACTTCTGCTATAAGAATTTCCTCAGCTCCATGACACTGCAG
CAGTTGGAGAGGATGAAGAATCAGTTCAGTGAGCTGCTCTACAACTACAA
ATTTCTGGCATCGTCAAACTGCAAGGATGCTGCATCCAATAAGAATTCTG
AGAAGATTCCCCTACTGAGGGCCATTATAGGAGCGGGACTCTATCCCAAC
ATGGCTCACTTGCGAAAATCACGGCAGATCAAGAATAGAGTACGCGCTAT
CCACACCATGGCAACGGACGATGGACGCCGCGTTAACTTTCATCCCTCCT
CGGTGAACAGCGGAGAGAGTGGCTTCGACTCGGCATACTTTGTCTACTTT
CAGCGGCAGAAGTCCACCGATCTTTTCCTGCTCGACTCCACAATGGTTTT
TCCCATGGCACTGATCATTTTCGGAGATGGCGTGGAAGCGGGAGTGACCC
AAAATACGCCATATCTGTGCGTGGCCAAGACATATTACTTTAAATGCAAT
CGTGAAACTGCCGACGTAGTCATACAATTAAGAAGCAATTTGGAGAAACT
GCTGCTCAAAAAGGCTTTGTATCCGGCCCCGATCGAGGAGAACGGATATG
AAAAGCAGTTGATCAAAGCCATCGAATTGCTTCTCTCGCTAGACGAAAGA
CTCGGCGAGGACTATATTTCATCCGATGAAATCGATGACATATAAAAGCT
TTCTAGACCAT
BS10257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 2829 | CG9323-PB | 1..2829 | 17..2845 | 14130 | 100 | Plus |
CG9323-RA | 2829 | CG9323-PA | 1..2829 | 17..2845 | 14130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 204..3032 | 17..2845 | 14130 | 100 | Plus |
CG9323-RA | 3019 | CG9323-RA | 98..2926 | 17..2845 | 14130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20755942..20757782 | 1857..17 | 9190 | 99.9 | Minus |
2L | 23513712 | 2L | 20755488..20755881 | 2250..1857 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 20754993..20755266 | 2637..2364 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 20754809..20754937 | 2766..2638 | 645 | 100 | Minus |
2L | 23513712 | 2L | 20755320..20755433 | 2364..2251 | 570 | 100 | Minus |
2L | 23513712 | 2L | 20754672..20754750 | 2845..2767 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:26 has no hits.
BS10257.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:37 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 1..2829 | 17..2845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:56 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 206..3041 | 9..2850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:02 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 98..2924 | 17..2843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:29 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 210..3036 | 17..2843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:15 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 98..2924 | 17..2843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:15 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754674..20754750 | 2767..2843 | 100 | <- | Minus |
2L | 20754809..20754937 | 2638..2766 | 100 | <- | Minus |
2L | 20754993..20755265 | 2365..2637 | 100 | <- | Minus |
2L | 20755320..20755433 | 2251..2364 | 100 | <- | Minus |
2L | 20755488..20755880 | 1858..2250 | 100 | <- | Minus |
2L | 20755942..20757782 | 17..1857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:02 Download gff for
BS10257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20754993..20755265 | 2365..2637 | 100 | <- | Minus |
arm_2L | 20755320..20755433 | 2251..2364 | 100 | <- | Minus |
arm_2L | 20754674..20754750 | 2767..2843 | 100 | <- | Minus |
arm_2L | 20754809..20754937 | 2638..2766 | 100 | <- | Minus |
arm_2L | 20755488..20755880 | 1858..2250 | 100 | <- | Minus |
arm_2L | 20755942..20757782 | 17..1857 | 99 | | Minus |
BS10257.pep Sequence
Translation from 16 to 2844
> BS10257.pep
MQRDRDSSGSNARKGNRPPGLRGKDIGLYYRNLARQQKKDRGENAESKEP
QIRLGCNVSAPSGVLERVKELMEDYSRAPSRQNVDDKNVDAKFQQQFRHL
LSVNFEEFVAETKERNADLDWVNPKLDERLQLELGQRQLEENAKKRLEAR
KKLPTMKYADDIIQAVRENQVILIVGSTGCGKTTQVPQILLDDAISRGCA
SSCRIICTQPRRISAIAIAEWVSYERCESLGNSVGYQIRLESRKARERAS
ITYCTTGVLLQQLQSDPLMHNLSVLILDEIHERSVETDLLMGLLKVILPH
RPDLKVILMSATVREQDFCDYFNNCPMFRIEGVMFPVKMLYLEDVLSKTN
YEFQKFRDRRPKRDPPERRMKHEAMIEPYLRRIRNSYDSRVLDKLRLPES
EGCEDIDFIADLVYYICENEPEGAILVFLPGYDKISQLYNILDKPKTSKG
QRWRDHMAVFPLHSLMQSGEQQAVFRRPPAGQRKVIISTIIAETSVTIDD
VVYVINSGRTKATNYDIETNIQSLDEVWVTKANTQQRRGRAGRVRPGICY
NLFSRAREDRMDDIPTPEILRSKLESIILSLKLLHIDDPYRFLQTLINAP
NPEAIKMGVELLKRIEALDQTGTLTPLGMHLAKLPIDPQMGKMILMSALF
CCLDPITSAAAALSFKSPFYSPLGKESRVDEIKRRMARNMRSDHLMVHNT
IIAYRDSRYSHAERDFCYKNFLSSMTLQQLERMKNQFSELLYNYKFLASS
NCKDAASNKNSEKIPLLRAIIGAGLYPNMAHLRKSRQIKNRVRAIHTMAT
DDGRRVNFHPSSVNSGESGFDSAYFVYFQRQKSTDLFLLDSTMVFPMALI
IFGDGVEAGVTQNTPYLCVAKTYYFKCNRETADVVIQLRSNLEKLLLKKA
LYPAPIEENGYEKQLIKAIELLLSLDERLGEDYISSDEIDDI*
BS10257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PB | 942 | CG9323-PB | 1..942 | 1..942 | 4848 | 100 | Plus |
CG9323-PA | 942 | CG9323-PA | 1..942 | 1..942 | 4848 | 100 | Plus |
CG1582-PB | 1288 | CG1582-PB | 427..1263 | 127..903 | 1142 | 34.8 | Plus |
CG1582-PA | 1288 | CG1582-PA | 427..1263 | 127..903 | 1142 | 34.8 | Plus |
mle-PC | 936 | CG11680-PC | 10..721 | 136..853 | 1026 | 34.5 | Plus |