Clone BS10257 Report

Search the DGRC for BS10257

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG9323-RA
Protein status:BS10257.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10257.3prime Sequence

894 bp (836 high quality bases) assembled on 2006-04-19

> BS10257.3prime
ATGGTCTAGAAAGCTTTTATATGTCATCGATTTCATCGGATGAAATATAG
TCCTCGCCGAGTCTTTCGTCTAGCGAGAGAAGCAATTCGATGGCTTTGAT
CAACTGCTTTTCATATCCGTTCTCCTCGATCGGGGCCGGATACAAAGCCT
TTTTGAGCAGCAGTTTCTCCAAATTGCTTCTTAATTGTATGACTACGTCG
GCAGTTTCACGATTGCATTTAAAGTAATATGTCTTGGCCACGCACAGATA
TGGCGTATTTTGGGTCACTCCCGCTTCCACGCCATCTCCGAAAATGATCA
GTGCCATGGGAAAAACCATTGTGGAGTCGAGCAGGAAAAGATCGGTGGAC
TTCTGCCGCTGAAAGTAGACAAAGTATGCCGAGTCGAAGCCACTCTCTCC
GCTGTTCACCGAGGAGGGATGAAAGTTAACGCGGCGTCCATCGTCCGTTG
CCATGGTGTGGATAGCGCGTACTCTATTCTTGATCTGCCGTGATTTTCGC
AAGTGAGCCATGTTGGGATAGAGTCCCGCTCCTATAATGGCCCTCAGTAG
GGGAATCTTCTCAGAATTCTTATTGGATGCAGCATCCTTGCAGTTTGACG
ATGCCAGAAATTTGTAGTTGTAGAGCAGCTCACTGAACTGATTCTTCATC
CTCTCCAACTGCTGCAGTGTCATGGAGCTGAGGAAATTCTTATAGCAGAA
GTCTCGTTCCGCGTGCGAATAGCGGCTATCGCGGTACGCAATAATGGTAT
TGTGCACCATCAGGTGATCGCTCCGCATATTTCGGGCCATTCTCCGCTTG
ATTTCATCCACTCGGCTCTCTTTACCCAAAGGCGAGTAGAAGGGGGACTT
AAAGGACAAGGCAGCCGCCGCCGAAGTGATGGGATCCAGCAACA

BS10257.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PA 2829 CG9323-RA 1958..2829 888..17 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 2154..3032 894..17 4370 99.9 Minus
CG9323-RA 3019 CG9323-RA 2048..2926 894..17 4370 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20755488..20755764 612..888 1385 100 Plus
2L 23513712 2L 20754993..20755266 225..498 1370 100 Plus
2L 23513712 2L 20754809..20754937 96..224 645 100 Plus
2L 23513712 2L 20755320..20755433 498..611 570 100 Plus
2L 23513712 2L 20754672..20754750 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:17:33 has no hits.

BS10257.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:18 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1952..2829 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:09 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1952..2829 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:45:10 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 2049..2929 12..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:49 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 2049..2929 12..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:49 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20754669..20754750 12..95 96 <- Plus
2L 20754809..20754937 96..224 100 <- Plus
2L 20754993..20755265 225..497 100 <- Plus
2L 20755320..20755433 498..611 100 <- Plus
2L 20755488..20755770 612..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:45:10 Download gff for BS10257.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20754669..20754750 12..95 96 <- Plus
arm_2L 20754809..20754937 96..224 100 <- Plus
arm_2L 20754993..20755265 225..497 100 <- Plus
arm_2L 20755320..20755433 498..611 100 <- Plus
arm_2L 20755488..20755770 612..893 99   Plus

BS10257.5prime Sequence

890 bp (741 high quality bases) assembled on 2006-04-19

> BS10257.5prime
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCANGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGG

BS10257.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PA 2829 CG9323-RA 1..874 17..890 4351 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 204..1077 17..890 4359 99.9 Plus
CG9323-RA 3019 CG9323-RA 98..971 17..890 4359 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20756909..20757782 890..17 4359 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 07:06:58 has no hits.

BS10257.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:19 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:10 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:02 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 94..971 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:39 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 94..971 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:39 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20756909..20757786 9..890 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:02 Download gff for BS10257.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20756909..20757786 9..890 99   Minus

BS10257.complete Sequence

2861 bp assembled on 2007-11-30

GenBank Submission: FJ636617

> BS10257.complete
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGTCTTCTAAA
GGTTATCCTGCCCCACAGACCCGATCTAAAGGTGATCCTGATGAGTGCAA
CTGTACGGGAGCAGGATTTTTGTGACTACTTTAACAACTGTCCCATGTTC
CGCATCGAGGGCGTGATGTTTCCCGTGAAGATGCTCTACTTGGAGGATGT
TCTGTCCAAGACGAACTACGAGTTCCAAAAGTTCCGCGATCGTCGTCCCA
AGCGGGATCCGCCTGAGCGCAGGATGAAGCACGAGGCTATGATAGAACCG
TATCTGCGACGCATCAGGAACTCGTACGATAGTCGTGTGCTCGACAAGCT
GCGTTTGCCGGAGTCGGAGGGCTGCGAGGATATTGATTTTATAGCCGATT
TGGTTTACTACATATGCGAAAACGAACCAGAGGGTGCCATATTAGTGTTC
CTGCCTGGTTATGATAAGATCTCCCAACTGTACAATATTCTGGATAAACC
AAAGACTTCGAAGGGCCAAAGGTGGCGGGATCATATGGCCGTATTTCCAT
TACATTCCCTAATGCAGTCAGGGGAACAGCAGGCAGTGTTCAGGCGACCA
CCGGCGGGCCAGCGTAAGGTTATAATCTCTACAATTATCGCCGAAACGTC
GGTGACTATTGACGACGTGGTTTATGTGATAAACTCTGGCCGGACGAAAG
CCACCAACTATGACATCGAAACGAACATACAGTCGCTGGATGAGGTTTGG
GTGACCAAAGCAAATACCCAGCAGCGGAGAGGCAGGGCAGGTCGAGTGCG
CCCGGGCATATGCTATAATCTGTTCTCCCGCGCTAGAGAGGATCGCATGG
ACGATATTCCGACGCCGGAGATACTACGCTCCAAGCTGGAATCCATAATT
TTAAGCCTCAAGCTACTGCACATCGACGATCCGTATCGGTTCCTGCAAAC
TCTTATTAATGCCCCCAATCCCGAGGCCATAAAGATGGGAGTGGAACTGC
TAAAGCGCATTGAGGCGTTGGACCAGACGGGCACCCTTACTCCACTGGGC
ATGCACTTGGCAAAGCTGCCCATTGATCCGCAGATGGGAAAAATGATCCT
GATGTCGGCGCTCTTCTGTTGCTTGGATCCCATCACTTCGGCGGCGGCTG
CCTTGTCCTTTAAGTCCCCCTTCTACTCGCCTTTGGGTAAAGAGAGCCGA
GTGGATGAAATCAAGCGGAGAATGGCCCGAAATATGCGGAGCGATCACCT
GATGGTGCACAATACCATTATTGCGTACCGCGATAGCCGCTATTCGCACG
CGGAACGAGACTTCTGCTATAAGAATTTCCTCAGCTCCATGACACTGCAG
CAGTTGGAGAGGATGAAGAATCAGTTCAGTGAGCTGCTCTACAACTACAA
ATTTCTGGCATCGTCAAACTGCAAGGATGCTGCATCCAATAAGAATTCTG
AGAAGATTCCCCTACTGAGGGCCATTATAGGAGCGGGACTCTATCCCAAC
ATGGCTCACTTGCGAAAATCACGGCAGATCAAGAATAGAGTACGCGCTAT
CCACACCATGGCAACGGACGATGGACGCCGCGTTAACTTTCATCCCTCCT
CGGTGAACAGCGGAGAGAGTGGCTTCGACTCGGCATACTTTGTCTACTTT
CAGCGGCAGAAGTCCACCGATCTTTTCCTGCTCGACTCCACAATGGTTTT
TCCCATGGCACTGATCATTTTCGGAGATGGCGTGGAAGCGGGAGTGACCC
AAAATACGCCATATCTGTGCGTGGCCAAGACATATTACTTTAAATGCAAT
CGTGAAACTGCCGACGTAGTCATACAATTAAGAAGCAATTTGGAGAAACT
GCTGCTCAAAAAGGCTTTGTATCCGGCCCCGATCGAGGAGAACGGATATG
AAAAGCAGTTGATCAAAGCCATCGAATTGCTTCTCTCGCTAGACGAAAGA
CTCGGCGAGGACTATATTTCATCCGATGAAATCGATGACATATAAAAGCT
TTCTAGACCAT

BS10257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 2829 CG9323-PB 1..2829 17..2845 14130 100 Plus
CG9323-RA 2829 CG9323-PA 1..2829 17..2845 14130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 204..3032 17..2845 14130 100 Plus
CG9323-RA 3019 CG9323-RA 98..2926 17..2845 14130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20755942..20757782 1857..17 9190 99.9 Minus
2L 23513712 2L 20755488..20755881 2250..1857 1970 100 Minus
2L 23513712 2L 20754993..20755266 2637..2364 1370 100 Minus
2L 23513712 2L 20754809..20754937 2766..2638 645 100 Minus
2L 23513712 2L 20755320..20755433 2364..2251 570 100 Minus
2L 23513712 2L 20754672..20754750 2845..2767 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:26 has no hits.

BS10257.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:37 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 1..2829 17..2845 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:56 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 206..3041 9..2850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:02 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 98..2924 17..2843 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:29 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 210..3036 17..2843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:15 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 98..2924 17..2843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:15 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20754674..20754750 2767..2843 100 <- Minus
2L 20754809..20754937 2638..2766 100 <- Minus
2L 20754993..20755265 2365..2637 100 <- Minus
2L 20755320..20755433 2251..2364 100 <- Minus
2L 20755488..20755880 1858..2250 100 <- Minus
2L 20755942..20757782 17..1857 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:02 Download gff for BS10257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20754993..20755265 2365..2637 100 <- Minus
arm_2L 20755320..20755433 2251..2364 100 <- Minus
arm_2L 20754674..20754750 2767..2843 100 <- Minus
arm_2L 20754809..20754937 2638..2766 100 <- Minus
arm_2L 20755488..20755880 1858..2250 100 <- Minus
arm_2L 20755942..20757782 17..1857 99   Minus

BS10257.pep Sequence

Translation from 16 to 2844

> BS10257.pep
MQRDRDSSGSNARKGNRPPGLRGKDIGLYYRNLARQQKKDRGENAESKEP
QIRLGCNVSAPSGVLERVKELMEDYSRAPSRQNVDDKNVDAKFQQQFRHL
LSVNFEEFVAETKERNADLDWVNPKLDERLQLELGQRQLEENAKKRLEAR
KKLPTMKYADDIIQAVRENQVILIVGSTGCGKTTQVPQILLDDAISRGCA
SSCRIICTQPRRISAIAIAEWVSYERCESLGNSVGYQIRLESRKARERAS
ITYCTTGVLLQQLQSDPLMHNLSVLILDEIHERSVETDLLMGLLKVILPH
RPDLKVILMSATVREQDFCDYFNNCPMFRIEGVMFPVKMLYLEDVLSKTN
YEFQKFRDRRPKRDPPERRMKHEAMIEPYLRRIRNSYDSRVLDKLRLPES
EGCEDIDFIADLVYYICENEPEGAILVFLPGYDKISQLYNILDKPKTSKG
QRWRDHMAVFPLHSLMQSGEQQAVFRRPPAGQRKVIISTIIAETSVTIDD
VVYVINSGRTKATNYDIETNIQSLDEVWVTKANTQQRRGRAGRVRPGICY
NLFSRAREDRMDDIPTPEILRSKLESIILSLKLLHIDDPYRFLQTLINAP
NPEAIKMGVELLKRIEALDQTGTLTPLGMHLAKLPIDPQMGKMILMSALF
CCLDPITSAAAALSFKSPFYSPLGKESRVDEIKRRMARNMRSDHLMVHNT
IIAYRDSRYSHAERDFCYKNFLSSMTLQQLERMKNQFSELLYNYKFLASS
NCKDAASNKNSEKIPLLRAIIGAGLYPNMAHLRKSRQIKNRVRAIHTMAT
DDGRRVNFHPSSVNSGESGFDSAYFVYFQRQKSTDLFLLDSTMVFPMALI
IFGDGVEAGVTQNTPYLCVAKTYYFKCNRETADVVIQLRSNLEKLLLKKA
LYPAPIEENGYEKQLIKAIELLLSLDERLGEDYISSDEIDDI*

BS10257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PB 942 CG9323-PB 1..942 1..942 4848 100 Plus
CG9323-PA 942 CG9323-PA 1..942 1..942 4848 100 Plus
CG1582-PB 1288 CG1582-PB 427..1263 127..903 1142 34.8 Plus
CG1582-PA 1288 CG1582-PA 427..1263 127..903 1142 34.8 Plus
mle-PC 936 CG11680-PC 10..721 136..853 1026 34.5 Plus