Clone Sequence Records
BS10259.3prime Sequence
908 bp (838 high quality bases) assembled on 2006-04-19
> BS10259.3prime
ATGGTCTAGAAAGCTTCTACTGCCGCTTTTCACCTGCTAGGCAGCCACAA
CCGGATCCAATGGAAATGTCGCGCCCGTGCTTGCTCAGCCACTCGATGAT
CACACCGTTGGACCAACCGAATCCAGTCTGTACCTCGTACTCGCCACCGC
CGCCTCCAACTCCGAACTCATCGGCGTTGTACTTCTCGTACATGTGCCTG
TCCTTGCTAAACGCCGCAAAGTTTGTCTTCACCCACCTGGTGGCCCACTT
CAGTGACATATTCTTGGCCTCGGGAGTGTTCAGGTTGTTTAGGCCCTCGA
CCAGGATGTACTGCATCGGTGCCCACACATTGGGGGCATCCCACTGTTCT
CCGGTGTAGCTCAGCGTGTTGGGAACTCCGCCAGGGAAGCTGTCCAGCTT
GTTCCTCTCAATGTAGGCCATAACCGAAGCCGATATCTTTTCGGACTCCG
AAATGTTGAAGGCCTTCACCCACAGTGGAGATAGATTGGTGGGCGTGTAG
TAATCGCGAGGCTTCTGGTTAATCATATCGTAGTCCAACCAGACACCGGC
CTCCTCGTTCCACAAAACTTCTTGGATACCCAGAAGGAGTTTCTCGGCCT
TGGTCTCGTATTCGGTGACCTTTTTGGTGTTGCCCGCTTTGGAATGGAAC
TCGGCAATCAACTTGGCGTTCCAGTAGAGATAGGCATTCAGGTCGACGGG
CACAATGGAGGTGGTGCTCAGAGCGCTCCGGTTGCCATCATTGGTTCCAG
TCGGTGAGATGAACCAGCGCGAGCTAAAGTCCATGCCCGATTCGGCGCCT
GCCTTGAGTTCACTGTAATGCAGTTCCTTGGCCTCATCCGTGGGGAACTC
CTCGCCGGTCTCACATCCCTCTCGTAGGATTCTGGTCGCGGTCCGGACGA
CGAATCGC
BS10259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9364-PE | 1683 | Treh-RE | 838..1683 | 862..17 | 4230 | 100 | Minus |
CG9364-PD | 1683 | Treh-RD | 838..1683 | 862..17 | 4230 | 100 | Minus |
CG9364-PA | 1683 | Treh-RA | 838..1683 | 862..17 | 4230 | 100 | Minus |
CG9364-PB | 1548 | Treh-RB | 703..1548 | 862..17 | 4230 | 100 | Minus |
CG9364-PC | 1791 | Treh-RC | 946..1791 | 862..17 | 4230 | 100 | Minus |
CG9364-PF | 1791 | Treh-RF | 946..1791 | 862..17 | 4230 | 100 | Minus |
CG9364-PE | 1683 | Treh-RE | 791..825 | 908..874 | 175 | 100 | Minus |
CG9364-PD | 1683 | Treh-RD | 791..825 | 908..874 | 175 | 100 | Minus |
CG9364-PA | 1683 | Treh-RA | 791..825 | 908..874 | 175 | 100 | Minus |
CG9364-PB | 1548 | Treh-RB | 656..690 | 908..874 | 175 | 100 | Minus |
CG9364-PC | 1791 | Treh-RC | 899..933 | 908..874 | 175 | 100 | Minus |
CG9364-PF | 1791 | Treh-RF | 899..933 | 908..874 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 1274..2168 | 908..15 | 4405 | 99.7 | Minus |
Treh-RF | 2822 | CG9364-RF | 1105..1999 | 908..15 | 4405 | 99.7 | Minus |
Treh-RC | 2928 | CG9364-RC | 1211..2105 | 908..15 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21085998..21086725 | 908..182 | 3515 | 99.2 | Minus |
2R | 25286936 | 2R | 21086788..21086956 | 183..15 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:20:34 has no hits.
BS10259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:23 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-PA | 791..1683 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:15 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9364-PC | 899..1791 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:59:34 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RC | 1211..2112 | 8..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:04 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RC | 1211..2112 | 8..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:04 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21085998..21086725 | 182..908 | 99 | -> | Minus |
2R | 21086790..21086963 | 8..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:59:34 Download gff for
BS10259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16973503..16974230 | 182..908 | 99 | -> | Minus |
arm_2R | 16974295..16974468 | 8..181 | 97 | | Minus |
BS10259.5prime Sequence
931 bp (842 high quality bases) assembled on 2006-04-19
> BS10259.5prime
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTCCCCACGGATGAAGCCAAGAACTGCATTACA
GTGAACTCAAGGCAGGCGCCGAATCCGGCAT
BS10259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9364-PE | 1683 | Treh-RE | 1..853 | 17..869 | 4265 | 100 | Plus |
CG9364-PD | 1683 | Treh-RD | 1..853 | 17..869 | 4265 | 100 | Plus |
CG9364-PA | 1683 | Treh-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
CG9364-PC | 1791 | Treh-RC | 158..961 | 66..869 | 4020 | 100 | Plus |
CG9364-PF | 1791 | Treh-RF | 158..961 | 66..869 | 4020 | 100 | Plus |
CG9364-PB | 1548 | Treh-RB | 1..718 | 152..869 | 3590 | 100 | Plus |
CG9364-PE | 1683 | Treh-RE | 874..917 | 888..931 | 195 | 97.7 | Plus |
CG9364-PD | 1683 | Treh-RD | 874..917 | 888..931 | 195 | 97.7 | Plus |
CG9364-PA | 1683 | Treh-RA | 874..917 | 888..931 | 195 | 97.7 | Plus |
CG9364-PC | 1791 | Treh-RC | 982..1025 | 888..931 | 195 | 97.7 | Plus |
CG9364-PF | 1791 | Treh-RF | 982..1025 | 888..931 | 195 | 97.7 | Plus |
CG9364-PB | 1548 | Treh-RB | 739..782 | 888..931 | 195 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 484..1400 | 17..931 | 4505 | 99.6 | Plus |
Treh-RA | 2758 | CG9364-RA | 251..1167 | 17..931 | 4505 | 99.6 | Plus |
Treh-RD | 2992 | CG9364-RD | 485..1401 | 17..931 | 4505 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21085448..21086124 | 257..931 | 3255 | 99.4 | Plus |
2R | 25286936 | 2R | 21085197..21085387 | 66..256 | 955 | 100 | Plus |
2R | 25286936 | 2R | 21077090..21077139 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:38:41 has no hits.
BS10259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:24 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-PE | 1..917 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:16 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9364-PA | 1..917 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:05 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 478..1401 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:26 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 478..1401 | 8..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:26 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21077083..21077139 | 8..66 | 93 | -> | Plus |
2R | 21085198..21085387 | 67..256 | 100 | -> | Plus |
2R | 21085448..21086124 | 257..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:05 Download gff for
BS10259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16964588..16964644 | 8..66 | 93 | -> | Plus |
arm_2R | 16972703..16972892 | 67..256 | 100 | -> | Plus |
arm_2R | 16972953..16973629 | 257..931 | 99 | | Plus |
BS10259.complete Sequence
1715 bp assembled on 2007-11-30
GenBank Submission: FJ636619
> BS10259.complete
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGGATGAGGCCAAGGAACTGCATTA
CAGTGAACTCAAGGCAGGCGCCGAATCGGGCATGGACTTTAGCTCGCGCT
GGTTCATCTCACCGACTGGAACCAATGATGGCAACCGGAGCGCTCTGAGC
ACCACCTCCATTGTGCCCGTCGACCTGAATGCCTATCTCTACTGGAACGC
CAAGTTGATTGCCGAGTTCCATTCCAAAGCGGGCAACACCAAAAAGGTCA
CCGAATACGAGACCAAGGCCGAGAAACTCCTTCTGGGTATCCAAGAAGTT
TTGTGGAACGAGGAGGCCGGTGTCTGGTTGGACTACGATATGATTAACCA
GAAGCCTCGCGATTACTACACGCCCACCAATCTATCTCCACTGTGGGTGA
AGGCCTTCAACATTTCGGAGTCCGAAAAGATATCGGCTTCGGTTATGGCC
TACATTGAGAGGAACAAGCTGGACAGCTTCCCTGGCGGAGTTCCCAACAC
GCTGAGCTACACCGGAGAACAGTGGGATGCCCCCAATGTGTGGGCACCGA
TGCAGTACATCCTGGTCGAGGGCCTAAACAACCTGAACACTCCCGAGGCC
AAGAATATGTCACTGAAGTGGGCCACCAGGTGGGTGAAGACAAACTTTGC
GGCGTTTAGCAAGGACAGGCACATGTACGAGAAGTACAACGCCGATGAGT
TCGGAGTTGGAGGCGGCGGTGGCGAGTACGAGGTACAGACTGGATTCGGT
TGGTCCAACGGTGTGATCATCGAGTGGCTGAGCAAGCACGGGCGCGACAT
TTCCATTGGATCCGGTTGTGGCTGCCTAGCAGGTGAAAAGCGGCAGTAGA
AGCTTTCTAGACCAT
BS10259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 1683 | CG9364-PG | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Treh-RA | 1683 | CG9364-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Treh-RD | 1683 | CG9364-PD | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 484..2168 | 17..1701 | 8425 | 100 | Plus |
Treh-RA | 2758 | CG9364-RA | 251..1935 | 17..1701 | 8425 | 100 | Plus |
Treh-RD | 2992 | CG9364-RD | 485..2169 | 17..1701 | 8425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21085448..21086725 | 257..1534 | 6390 | 100 | Plus |
2R | 25286936 | 2R | 21085197..21085387 | 66..256 | 955 | 100 | Plus |
2R | 25286936 | 2R | 21086788..21086956 | 1533..1701 | 845 | 100 | Plus |
2R | 25286936 | 2R | 21077090..21077139 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:09 has no hits.
BS10259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:38 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 1..1683 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:58 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 489..2187 | 8..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:13 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 485..2167 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:02 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 496..2178 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:19 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 485..2167 | 17..1699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:19 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21077090..21077139 | 17..66 | 100 | -> | Plus |
2R | 21085198..21085387 | 67..256 | 100 | -> | Plus |
2R | 21085448..21086725 | 257..1534 | 100 | -> | Plus |
2R | 21086790..21086954 | 1535..1699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:13 Download gff for
BS10259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16964595..16964644 | 17..66 | 100 | -> | Plus |
arm_2R | 16972703..16972892 | 67..256 | 100 | -> | Plus |
arm_2R | 16972953..16974230 | 257..1534 | 100 | -> | Plus |
arm_2R | 16974295..16974459 | 1535..1699 | 100 | | Plus |
BS10259.pep Sequence
Translation from 16 to 1698
> BS10259.pep
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQ*
BS10259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-PG | 560 | CG9364-PG | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PA | 560 | CG9364-PA | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PD | 560 | CG9364-PD | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PE | 560 | CG9364-PE | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PF | 596 | CG9364-PF | 54..596 | 18..560 | 2936 | 100 | Plus |