Clone BS10259 Report

Search the DGRC for BS10259

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTreh-RA
Protein status:BS10259.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10259.3prime Sequence

908 bp (838 high quality bases) assembled on 2006-04-19

> BS10259.3prime
ATGGTCTAGAAAGCTTCTACTGCCGCTTTTCACCTGCTAGGCAGCCACAA
CCGGATCCAATGGAAATGTCGCGCCCGTGCTTGCTCAGCCACTCGATGAT
CACACCGTTGGACCAACCGAATCCAGTCTGTACCTCGTACTCGCCACCGC
CGCCTCCAACTCCGAACTCATCGGCGTTGTACTTCTCGTACATGTGCCTG
TCCTTGCTAAACGCCGCAAAGTTTGTCTTCACCCACCTGGTGGCCCACTT
CAGTGACATATTCTTGGCCTCGGGAGTGTTCAGGTTGTTTAGGCCCTCGA
CCAGGATGTACTGCATCGGTGCCCACACATTGGGGGCATCCCACTGTTCT
CCGGTGTAGCTCAGCGTGTTGGGAACTCCGCCAGGGAAGCTGTCCAGCTT
GTTCCTCTCAATGTAGGCCATAACCGAAGCCGATATCTTTTCGGACTCCG
AAATGTTGAAGGCCTTCACCCACAGTGGAGATAGATTGGTGGGCGTGTAG
TAATCGCGAGGCTTCTGGTTAATCATATCGTAGTCCAACCAGACACCGGC
CTCCTCGTTCCACAAAACTTCTTGGATACCCAGAAGGAGTTTCTCGGCCT
TGGTCTCGTATTCGGTGACCTTTTTGGTGTTGCCCGCTTTGGAATGGAAC
TCGGCAATCAACTTGGCGTTCCAGTAGAGATAGGCATTCAGGTCGACGGG
CACAATGGAGGTGGTGCTCAGAGCGCTCCGGTTGCCATCATTGGTTCCAG
TCGGTGAGATGAACCAGCGCGAGCTAAAGTCCATGCCCGATTCGGCGCCT
GCCTTGAGTTCACTGTAATGCAGTTCCTTGGCCTCATCCGTGGGGAACTC
CTCGCCGGTCTCACATCCCTCTCGTAGGATTCTGGTCGCGGTCCGGACGA
CGAATCGC

BS10259.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9364-PE 1683 Treh-RE 838..1683 862..17 4230 100 Minus
CG9364-PD 1683 Treh-RD 838..1683 862..17 4230 100 Minus
CG9364-PA 1683 Treh-RA 838..1683 862..17 4230 100 Minus
CG9364-PB 1548 Treh-RB 703..1548 862..17 4230 100 Minus
CG9364-PC 1791 Treh-RC 946..1791 862..17 4230 100 Minus
CG9364-PF 1791 Treh-RF 946..1791 862..17 4230 100 Minus
CG9364-PE 1683 Treh-RE 791..825 908..874 175 100 Minus
CG9364-PD 1683 Treh-RD 791..825 908..874 175 100 Minus
CG9364-PA 1683 Treh-RA 791..825 908..874 175 100 Minus
CG9364-PB 1548 Treh-RB 656..690 908..874 175 100 Minus
CG9364-PC 1791 Treh-RC 899..933 908..874 175 100 Minus
CG9364-PF 1791 Treh-RF 899..933 908..874 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 1274..2168 908..15 4405 99.7 Minus
Treh-RF 2822 CG9364-RF 1105..1999 908..15 4405 99.7 Minus
Treh-RC 2928 CG9364-RC 1211..2105 908..15 4405 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085998..21086725 908..182 3515 99.2 Minus
2R 25286936 2R 21086788..21086956 183..15 845 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:20:34 has no hits.

BS10259.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:23 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-PA 791..1683 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:15 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9364-PC 899..1791 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:59:34 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RC 1211..2112 8..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:04 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RC 1211..2112 8..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:04 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21085998..21086725 182..908 99 -> Minus
2R 21086790..21086963 8..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:59:34 Download gff for BS10259.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16973503..16974230 182..908 99 -> Minus
arm_2R 16974295..16974468 8..181 97   Minus

BS10259.5prime Sequence

931 bp (842 high quality bases) assembled on 2006-04-19

> BS10259.5prime
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTCCCCACGGATGAAGCCAAGAACTGCATTACA
GTGAACTCAAGGCAGGCGCCGAATCCGGCAT

BS10259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9364-PE 1683 Treh-RE 1..853 17..869 4265 100 Plus
CG9364-PD 1683 Treh-RD 1..853 17..869 4265 100 Plus
CG9364-PA 1683 Treh-RA 1..853 17..869 4265 100 Plus
CG9364-PC 1791 Treh-RC 158..961 66..869 4020 100 Plus
CG9364-PF 1791 Treh-RF 158..961 66..869 4020 100 Plus
CG9364-PB 1548 Treh-RB 1..718 152..869 3590 100 Plus
CG9364-PE 1683 Treh-RE 874..917 888..931 195 97.7 Plus
CG9364-PD 1683 Treh-RD 874..917 888..931 195 97.7 Plus
CG9364-PA 1683 Treh-RA 874..917 888..931 195 97.7 Plus
CG9364-PC 1791 Treh-RC 982..1025 888..931 195 97.7 Plus
CG9364-PF 1791 Treh-RF 982..1025 888..931 195 97.7 Plus
CG9364-PB 1548 Treh-RB 739..782 888..931 195 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 484..1400 17..931 4505 99.6 Plus
Treh-RA 2758 CG9364-RA 251..1167 17..931 4505 99.6 Plus
Treh-RD 2992 CG9364-RD 485..1401 17..931 4505 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085448..21086124 257..931 3255 99.4 Plus
2R 25286936 2R 21085197..21085387 66..256 955 100 Plus
2R 25286936 2R 21077090..21077139 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:38:41 has no hits.

BS10259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:24 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-PE 1..917 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:16 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9364-PA 1..917 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:05 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 478..1401 8..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:26 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 478..1401 8..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:26 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21077083..21077139 8..66 93 -> Plus
2R 21085198..21085387 67..256 100 -> Plus
2R 21085448..21086124 257..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:05 Download gff for BS10259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16964588..16964644 8..66 93 -> Plus
arm_2R 16972703..16972892 67..256 100 -> Plus
arm_2R 16972953..16973629 257..931 99   Plus

BS10259.complete Sequence

1715 bp assembled on 2007-11-30

GenBank Submission: FJ636619

> BS10259.complete
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGGATGAGGCCAAGGAACTGCATTA
CAGTGAACTCAAGGCAGGCGCCGAATCGGGCATGGACTTTAGCTCGCGCT
GGTTCATCTCACCGACTGGAACCAATGATGGCAACCGGAGCGCTCTGAGC
ACCACCTCCATTGTGCCCGTCGACCTGAATGCCTATCTCTACTGGAACGC
CAAGTTGATTGCCGAGTTCCATTCCAAAGCGGGCAACACCAAAAAGGTCA
CCGAATACGAGACCAAGGCCGAGAAACTCCTTCTGGGTATCCAAGAAGTT
TTGTGGAACGAGGAGGCCGGTGTCTGGTTGGACTACGATATGATTAACCA
GAAGCCTCGCGATTACTACACGCCCACCAATCTATCTCCACTGTGGGTGA
AGGCCTTCAACATTTCGGAGTCCGAAAAGATATCGGCTTCGGTTATGGCC
TACATTGAGAGGAACAAGCTGGACAGCTTCCCTGGCGGAGTTCCCAACAC
GCTGAGCTACACCGGAGAACAGTGGGATGCCCCCAATGTGTGGGCACCGA
TGCAGTACATCCTGGTCGAGGGCCTAAACAACCTGAACACTCCCGAGGCC
AAGAATATGTCACTGAAGTGGGCCACCAGGTGGGTGAAGACAAACTTTGC
GGCGTTTAGCAAGGACAGGCACATGTACGAGAAGTACAACGCCGATGAGT
TCGGAGTTGGAGGCGGCGGTGGCGAGTACGAGGTACAGACTGGATTCGGT
TGGTCCAACGGTGTGATCATCGAGTGGCTGAGCAAGCACGGGCGCGACAT
TTCCATTGGATCCGGTTGTGGCTGCCTAGCAGGTGAAAAGCGGCAGTAGA
AGCTTTCTAGACCAT

BS10259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 1683 CG9364-PG 1..1683 17..1699 8415 100 Plus
Treh-RA 1683 CG9364-PA 1..1683 17..1699 8415 100 Plus
Treh-RD 1683 CG9364-PD 1..1683 17..1699 8415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 484..2168 17..1701 8425 100 Plus
Treh-RA 2758 CG9364-RA 251..1935 17..1701 8425 100 Plus
Treh-RD 2992 CG9364-RD 485..2169 17..1701 8425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085448..21086725 257..1534 6390 100 Plus
2R 25286936 2R 21085197..21085387 66..256 955 100 Plus
2R 25286936 2R 21086788..21086956 1533..1701 845 100 Plus
2R 25286936 2R 21077090..21077139 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:09 has no hits.

BS10259.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:38 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 1..1683 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:58 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 489..2187 8..1708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:13 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 485..2167 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:02 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 496..2178 17..1699 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:19 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 485..2167 17..1699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:19 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21077090..21077139 17..66 100 -> Plus
2R 21085198..21085387 67..256 100 -> Plus
2R 21085448..21086725 257..1534 100 -> Plus
2R 21086790..21086954 1535..1699 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:13 Download gff for BS10259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16964595..16964644 17..66 100 -> Plus
arm_2R 16972703..16972892 67..256 100 -> Plus
arm_2R 16972953..16974230 257..1534 100 -> Plus
arm_2R 16974295..16974459 1535..1699 100   Plus

BS10259.pep Sequence

Translation from 16 to 1698

> BS10259.pep
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQ*

BS10259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-PG 560 CG9364-PG 1..560 1..560 3029 100 Plus
Treh-PA 560 CG9364-PA 1..560 1..560 3029 100 Plus
Treh-PD 560 CG9364-PD 1..560 1..560 3029 100 Plus
Treh-PE 560 CG9364-PE 1..560 1..560 3029 100 Plus
Treh-PF 596 CG9364-PF 54..596 18..560 2936 100 Plus