Clone Sequence Records
BS10260.3prime Sequence
919 bp (822 high quality bases) assembled on 2006-04-19
> BS10260.3prime
ATGGTCTAGAAAGCTTCTAGAGAATGTTGAGCAGGGAGGAGTCCATCATC
CGATCGTCGTACAAGCTCAGTGTCTTGCTGGCCCTGGCTTTCCGTACGGA
TGGTGGCACATCTCCCGGCGTCTTGACCCGCTCGCTGGGGTCCCTCAAAC
GCTCGCTGCTCCCCCGACCGCTGAATACCTCACGGAATACCTCCAGACTG
TGCTGACGACGCATTTGCTGCTCCGTCGGCGGACCCTGACCCGTGGTGGC
CATCAGGGAGTTGGTGCGCAGGTGACCTGGTCTTCGCTTCGAAGCCGGAC
GGGTGAGGGTCTGCAATTCGCTACCATGACTCTGGATGGAGTTATTGTTG
GTGGTCCCGTTGATGTGCTTGATCAGGCTGCTGGACAGCGATCGGGGTAC
AATGTGAGCGGGAGTTCCCATCCGTTGCTCTGCACTCCTCAGCTGATCCG
GCGGAGGTTTATCGAGGCGAGGATTAAGATCCAGGTTGTTCGGTCGACGC
AGAGCCGTCACCAGATTGGACTTCTCTTCGCCCAACTGCAACTGACGACA
CAGCTCCTCGGCATGCTCTTTGCGAAAAAGTTTCTTGTGGATCAGGGCTC
TTACTCCATGCCATCCCCGGAGTTTTTGATCCGTGTTCTGCTGCTTGGGA
AATCCCTGACCCAAGCAGGAATTGCCATTTCCACCTGTGCTTACAATCGT
GTTCTTTTGCTGCTGGTGCTGATGGCTGGCTATCAGCTCCTCCACACTCA
CATCATGCTCCAAGCAAGACAGTGAGTTCTCCTGAGGCTGTGTCTGGAAA
CTGTGCTTCTTGCTCCGCTCCACAAGAACCGGTGGAGTTCGCATTGTCAG
AGGTGCCAGATTGCGCTCCTGGCAGGGATTCCTGCCCTGATACGGCTGGC
ATTTGCTGTGCGGGTAGCT
BS10260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10776-PA | 2712 | wit-RA | 1831..2712 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-RB | 4217 | CG10776-RB | 2223..3125 | 919..17 | 4455 | 99.7 | Minus |
| wit-RA | 4217 | CG10776-RA | 2223..3125 | 919..17 | 4455 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4065244..4066125 | 17..898 | 4410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:52:07 has no hits.
BS10260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:25 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-PA | 1810..2712 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:17 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10776-PA | 1810..2712 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:38 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 2223..3125 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:15 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 2223..3125 | 17..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:15 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4065244..4066146 | 17..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:38 Download gff for
BS10260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4065244..4066146 | 17..919 | 99 | | Plus |
BS10260.5prime Sequence
774 bp (742 high quality bases) assembled on 2006-04-19
> BS10260.5prime
GAAGTTATCAGTCGACATGAATTGGGCTATCTATCTTTTGTTGGCCCTGA
TCTCGCTGGGCAGAGCAACACCTGTTCCCAATCGCCAGTATAGCTGTATG
AGCTACCAGGAGGACGACAACTCATTTCACGATGATGATGGCGATCAGGA
CTCTAGTGGCGAGCTGCAGGAGCAGCAGGTGGAGTCCACTCCGATTCCGA
GCGAGCCACATAGACGCACCTGCCCAGATGGCTACACTTTCTGTTTCACC
ATCTGGAACCAGACGGCCAATGGAGCGCGGGTTGTTAAACAGGGTTGCTG
GAAGGACAACACGGATCGCACTTCCATTTGCAGCCAGTCGGAATGTACCA
GCTCGGCTCCCACCTCGAAGACCAGTTCTTTGTACTACTGTTGCTGTTCG
GGAGGAGTGTGCAATGCCCAATATTCCGTGGTCGAACCGGCACCTCTGGA
ACTGGGCTCCAATGAGGGACGGACTTCGATCACAAATCGGGCGACAGAAA
AACAGCACCAGTCCTTTTTGGCCAGTACAATGCTGGGCCTTGCCGGTGGA
CTCACAGCCCTCACAATCGGCATCTTTCTGGCTGTTCAATATTGCCGCAC
GGCCAAGGAGAAGCCGGAACCGGAGGAGTCGCCTCTGGCACCATCGGGCC
CTGGCTACAGTTCTAATCTCAGGAATGTCGACAACATGAATTTGATCGGC
ATGCTGGGGAGCGGCAAGTATGGAACTGTGATGAAGGGACTGCTCCACGA
TCAGGAGGTGGCGGTTAAGATATA
BS10260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10776-PA | 2712 | wit-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-RB | 4217 | CG10776-RB | 411..1171 | 14..774 | 3805 | 100 | Plus |
| wit-RA | 4217 | CG10776-RA | 411..1171 | 14..774 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4067323..4067804 | 774..293 | 2410 | 100 | Minus |
| 3L | 28110227 | 3L | 4067862..4068088 | 295..69 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 4068159..4068213 | 68..14 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:38:53 has no hits.
BS10260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:26 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-PA | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:19 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10776-PA | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:07 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 409..1170 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:28 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 409..1170 | 9..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:28 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4067864..4068088 | 69..293 | 100 | <- | Minus |
| 3L | 4068159..4068215 | 9..68 | 95 | | Minus |
| 3L | 4067324..4067803 | 294..773 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:07 Download gff for
BS10260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4067324..4067803 | 294..773 | 100 | <- | Minus |
| arm_3L | 4067864..4068088 | 69..293 | 100 | <- | Minus |
| arm_3L | 4068159..4068215 | 9..68 | 95 | | Minus |
BS10260.complete Sequence
2744 bp assembled on 2007-11-30
> BS10260.complete
GAAGTTATCAGTCGACATGAATTGGGCTATCTATCTTTTGTTGGCCCTGA
TCTCGCTGGGCAGAGCAACACCTGTTCCCAATCGCCAGTATAGCTGTATG
AGCTACCAGGAGGACGACAACTCATTTCACGATGATGATGGCGATCAGGA
CTCTAGTGGCGAGCTGCAGGAGCAGCAGGTGGAGTCCACTCCGATTCCGA
GCGAGCCACATAGACGCACCTGCCCAGATGGCTACACTTTCTGTTTCACC
ATCTGGAACCAGACGGCCAATGGAGCGCGGGTTGTTAAACAGGGTTGCTG
GAAGGACAACACGGATCGCACTTCCATTTGCAGCCAGTCGGAATGTACCA
GCTCGGCTCCCACCTCGAAGACCAGTTCTTTGTACTACTGTTGCTGTTCG
GGAGGAGTGTGCAATGCCCAATATTCCGTGGTCGAACCGGCACCTCTGGA
ACTGGGCTCCAATGAGGGACGGACTTCGATCACAAATCGGGCGACAGAAA
AACAGCACCAGTCCTTTTTGGCCAGTACAATGCTGGGCCTTGCCGGTGGA
CTCACAGCCCTCACAATCGGCATCTTTCTGGCTGTTCAATATTGCCGCAC
GGCCAAGGAGAAGCCGGAACCGGAGGAGTCGCCTCTGGCACCATCGGGCC
CTGGCTACAGTTCTAATCTCAGGAATGTCGACAACATGAATTTGATCGGC
ATGCTGGGGAGCGGCAAGTATGGAACTGTGATGAAGGGACTGCTCCACGA
TCAGGAGGTGGCGGTTAAGATATATCCCGAAGAGCATCATCAGTACTATG
TGAACGAGAGGAACATCTATGCCTTGCCTTTGATGGAGTGTCCTGCGCTG
TTGAGCTATTTCGGCTACGATGAACGCTGTACCATGGACGGGCGAATGGA
GTATCAACTGGTACTATCACTGGCTCCCCTCGGATGCCTCCAGGATTGGT
TGATAGCCAATACCCTAACTTTCAGCGAATGCTGTGGAATGCTGCGGTCC
ATCACGCGTGGAATCTCGCACCTGCACACGGAACTCCGACTGGGAGATCA
GCATAAGCCCTGTGTGGCTCATCGGGATATCAACACAAGGAATGTGTTGG
TCCAAGCTGATCTCAGCTGTTGCATTGCGGACTTTGGTTTCGCTCTCAAG
GTGTTTGGCTCCAAGTACGAGTACAAGGGCGAGGTGGCCATGGCGGAAAC
GAAGAGCATCAATGAGGTGGGCACCCTTCGCTACATGGCCCCAGAATTAC
TGGAAGGAGCTGTAAATCTGCGGGATTGCGAAACCTCGCTGAAGCAAATG
GATGTCTATGCCCTGGGCCTGGTGCTGTGGGAAGTGGCTACCCGCTGCTC
GGATTTCTATGCCCCTGGTCAAGCAACACCTCCCTACAAAGCACCCTATG
AGCAGGAGGTGGGCTCCCATCCCAGCTTTGATCAAATGCAGGCGTTGGTG
GTGCGGCACAAGGCGCGTCCCTTATTTCCCACCGGCTGGGGTGGAGGAGC
AGCGGCTAAAGTGGTGCGGGATACTTGCGAGGACTGTTGGGATCATGATG
CGGATGCTAGGCTGACCTCCCTGTGTGCCGAGGAGCGCATGCAGGAGATG
TCGACTTTAAGGCCACGAGCACAGGCTCAACCTTCCAGTCCACTGCTGAA
TACCAACAATCTGGTGGCCAGTCCAACTGCGGAACAGGGAATAAATATCA
TAGCCACAACGACAACGGCGGCTGCAGTCCATCACCAGATGAGCTCCGAC
ACTACGGGACTTATACAGCCACCTCCCAATCAGCAGATACCTCTAGCTGC
CTTGGAACGGGAGAAGAATCATCTGAGCTACCCGCAACAGCAATTGCAGC
CGTATCAGGGCAGGAATCCCTGCCAGGAGCGCAATCTGGCACCTCTGACA
ATGCGAACTCCACCGGTTCTTGTGGAGCGGAGCAAGAAGCACAGTTTCCA
GACACAGCCTCAGGAGAACTCACTGTCTTGCTTGGAGCATGATGTGAGTG
TGGAGGAGCTGATAGCCAGCCATCAGCACCAGCAGCAAAAGAACACGATT
GTAAGCACAGGTGGAAATGGCAATTCCTGCTTGGGTCAGGGATTTCCCAA
GCAGCAGAACACGGATCAAAAACTCCGGGGATGGCATGGAGTAAGAGCCC
TGATCCACAAGAAACTTTTTCGCAAAGAGCATGCCGAGGAGCTGTGTCGT
CAGTTGCAGTTGGGCGAAGAGAAGTCCAATCTGGTGACGGCTCTGCGTCG
ACCGAACAACCTGGATCTTAATCCTCGCCTCGATAAACCTCCGCCGGATC
AGCTGAGGAGTGCAGAGCAACGGATGGGAACTCCCGCTCACATTGTACCC
CGATCGCTGTCCAGCAGCCTGATCAAGCACATCAACGGGACCACCAACAA
TAACTCCATCCAGAGTCATGGTAGCGAATTGCAGACCCTCACCCGTCCGG
CTTCGAAGCGAAGACCAGGTCACCTGCGCACCAACTCCCTGATGGCCACC
ACGGGTCAGGGTCCGCCGACGGAGCAGCAAATGCGTCGTCAGCACAGTCT
GGAGGTATTCCGTGAGGTATTCAGCGGTCGGGGGAGCAGCGAGCGTTTGA
GGGACCCCAGCGAGCGGGTCAAGACGCCGGGAGATGTGCCACCATCCGTA
CGGAAAGCCAGGGCCAGCAAGACACTGAGCTTGTACGACGATCGGATGAT
GGACTCCTCCCTGCTCAACATTCTCTAGAAGCTTTCTAGACCAT
BS10260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-RB | 2742 | CG10776-PB | 1..2712 | 17..2728 | 13560 | 100 | Plus |
| wit-RA | 2712 | CG10776-PA | 1..2712 | 17..2728 | 13560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-RB | 4217 | CG10776-RB | 411..3125 | 14..2728 | 13575 | 100 | Plus |
| wit-RA | 4217 | CG10776-RA | 411..3125 | 14..2728 | 13575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4065244..4066287 | 2728..1685 | 5220 | 100 | Minus |
| 3L | 28110227 | 3L | 4066346..4067171 | 1688..863 | 4130 | 100 | Minus |
| 3L | 28110227 | 3L | 4067233..4067804 | 864..293 | 2860 | 100 | Minus |
| 3L | 28110227 | 3L | 4067862..4068088 | 295..69 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 4068159..4068213 | 68..14 | 275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 778..826 | 1551..1599 | 119 | 71.4 | Plus |
BS10260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:39 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 1..2712 | 17..2728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:59 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 405..3121 | 9..2728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:08 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 414..3125 | 17..2728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:28 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 410..3121 | 17..2728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:04 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wit-RA | 414..3125 | 17..2728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:04 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4065244..4066284 | 1688..2728 | 100 | <- | Minus |
| 3L | 4066347..4067170 | 864..1687 | 100 | <- | Minus |
| 3L | 4067234..4067803 | 294..863 | 100 | <- | Minus |
| 3L | 4067864..4068088 | 69..293 | 100 | <- | Minus |
| 3L | 4068159..4068210 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:08 Download gff for
BS10260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4065244..4066284 | 1688..2728 | 100 | <- | Minus |
| arm_3L | 4066347..4067170 | 864..1687 | 100 | <- | Minus |
| arm_3L | 4067234..4067803 | 294..863 | 100 | <- | Minus |
| arm_3L | 4067864..4068088 | 69..293 | 100 | <- | Minus |
| arm_3L | 4068159..4068210 | 17..68 | 100 | | Minus |
BS10260.pep Sequence
Translation from 16 to 2727
> BS10260.pep
MNWAIYLLLALISLGRATPVPNRQYSCMSYQEDDNSFHDDDGDQDSSGEL
QEQQVESTPIPSEPHRRTCPDGYTFCFTIWNQTANGARVVKQGCWKDNTD
RTSICSQSECTSSAPTSKTSSLYYCCCSGGVCNAQYSVVEPAPLELGSNE
GRTSITNRATEKQHQSFLASTMLGLAGGLTALTIGIFLAVQYCRTAKEKP
EPEESPLAPSGPGYSSNLRNVDNMNLIGMLGSGKYGTVMKGLLHDQEVAV
KIYPEEHHQYYVNERNIYALPLMECPALLSYFGYDERCTMDGRMEYQLVL
SLAPLGCLQDWLIANTLTFSECCGMLRSITRGISHLHTELRLGDQHKPCV
AHRDINTRNVLVQADLSCCIADFGFALKVFGSKYEYKGEVAMAETKSINE
VGTLRYMAPELLEGAVNLRDCETSLKQMDVYALGLVLWEVATRCSDFYAP
GQATPPYKAPYEQEVGSHPSFDQMQALVVRHKARPLFPTGWGGGAAAKVV
RDTCEDCWDHDADARLTSLCAEERMQEMSTLRPRAQAQPSSPLLNTNNLV
ASPTAEQGINIIATTTTAAAVHHQMSSDTTGLIQPPPNQQIPLAALEREK
NHLSYPQQQLQPYQGRNPCQERNLAPLTMRTPPVLVERSKKHSFQTQPQE
NSLSCLEHDVSVEELIASHQHQQQKNTIVSTGGNGNSCLGQGFPKQQNTD
QKLRGWHGVRALIHKKLFRKEHAEELCRQLQLGEEKSNLVTALRRPNNLD
LNPRLDKPPPDQLRSAEQRMGTPAHIVPRSLSSSLIKHINGTTNNNSIQS
HGSELQTLTRPASKRRPGHLRTNSLMATTGQGPPTEQQMRRQHSLEVFRE
VFSGRGSSERLRDPSERVKTPGDVPPSVRKARASKTLSLYDDRMMDSSLL
NIL*
BS10260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wit-PB | 913 | CG10776-PB | 1..903 | 1..903 | 4784 | 100 | Plus |
| wit-PA | 903 | CG10776-PA | 1..903 | 1..903 | 4784 | 100 | Plus |
| put-PC | 516 | CG7904-PC | 56..503 | 65..548 | 631 | 33.2 | Plus |
| put-PA | 516 | CG7904-PA | 56..503 | 65..548 | 631 | 33.2 | Plus |
| put-PB | 520 | CG7904-PB | 56..503 | 65..548 | 631 | 33.2 | Plus |
