Clone BS10262 Report

Search the DGRC for BS10262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptmew-RA
Protein status:BS10262.pep: Imported from assembly
Sequenced Size:3183

Clone Sequence Records

BS10262.3prime Sequence

925 bp (923 high quality bases) assembled on 2006-04-19

> BS10262.3prime
ATGGTCTAGAAAGCTTTTAGGAAAACGTGATGCGTATTCTTTGATGGCGC
CAGGAAGGGCTTCTCCTCGTTCATTTTCTCCAGATTGCCGCTTAACGTCG
GATCGGTGGGTCGGATGCGCTTAAAGAAGCCTACCTTCCACAGCACATAG
GTGACCAGCGCAAGGAGGAGCAGGCCACCAACGATGCCCAGGATGATAAT
CAGCCACGGTATCGATGTGTCGCGCTGTTGGTTCCTTAACTCCGGATAGG
CCCGCGTCTCCACCTCTATGTTATTGTGATCCATCACCTCGACGCCATAG
CTCTCGGGTATTTGAGCCGTGGCTGTCGAGAAAATCCTGACCCTTTCCAC
CCGAGGATACTCACTGACCAGCGTCGAGTTCCACAGGCGCGCCTTGACCA
CCACCTGGGCCTCGGACAAAGCGGGCATGTTTAGGATGTCACACTCGATG
CGCACGCAGTTGGTCGCGCCCTTATTGCAGTCCAGCTCGACGATGTCCTG
CTTCTTGCCATTCGCCGCATTGCTACTCTCGGGATCGTACATTAACCTCT
CCAGGCGCGTCACCCGTTCTAGGAAACTGCGACGGACACGATTGCGGTTC
GATTGAGTGTCATCCGAATGATCATCCCGGTGGCTGCTGGAGTAGTAGCT
TCTCTGCGAGTGGATCAAGCTCTTGTTGAACGAATGACGCGACTGCGAGG
GGAACATTCTCATCTGGGCGGGAGCACTCAAGTAGGCTGGATTTTCCCTA
GAACCGCTGGCCAAATTCAGCGGATTGACATATTCTTTGGCCACATGGCA
TTCGCCCTGGCTAACTTCCACAGTGGGTACTTGCTCCAGATAGAGTAGAT
ACTGAACCGGTCGACCGCTCTGTGGATCACTGTACAGTGAGTATGGCCAA
TGGATGACCATTTGTACCTTCGGCG

BS10262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1771-PA 3150 mew-RA 2243..3147 925..21 4525 100 Minus
CG1771-PB 3441 mew-RB 2534..3438 925..21 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RD 4350 CG1771-RD 2982..3886 925..21 4525 100 Minus
mew-RC 4281 CG1771-RC 2913..3817 925..21 4525 100 Minus
mew-RE 3863 CG1771-RE 2495..3399 925..21 4525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13215916..13216580 261..925 3325 100 Plus
X 23542271 X 13215620..13215864 21..265 1225 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:21:56 has no hits.

BS10262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:29 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-PA 2243..3150 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:24 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1771-PB 2534..3441 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:18 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-RE 2495..3406 14..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-RE 2495..3406 14..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13215621..13215862 22..263 100 <- Plus
X 13215919..13216580 264..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:18 Download gff for BS10262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13109654..13109895 22..263 100 <- Plus
arm_X 13109952..13110613 264..925 100   Plus

BS10262.5prime Sequence

914 bp (886 high quality bases) assembled on 2006-04-19

> BS10262.5prime
GAAGTTATCAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGA
TCACCGATGGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGC
AATGACGAAATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAA
TCCCCTACAGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATC
GCTATATGTACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTAT
CTCCTAACGAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGG
ACGACCTGTGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCA
CATCGGCTGCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGA
CCGTACACATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTA
CCTGCAGCGCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATT
CGCCGGTGGACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGA
TTCTTTGGTCACATGTCATATGCGGCTGGAGCTCCACGATCCGAGGGTCA
TGGACAGGTGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGC
ACTCGATCCTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTG
GCAACCGCCGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGC
TCCTTTGTACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGA
ATATCCAGGATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCT
CTGGAGAGTCGTTTCGGTCTGGCGTTGGCAATATCGGAGATCTGAACAGG
ATAACTGCGAGGAT

BS10262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1771-PA 3150 mew-RA 1..863 17..879 4315 100 Plus
CG1771-PB 3441 mew-RB 292..1154 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3863 CG1771-RE 253..1152 17..914 4450 99.8 Plus
mew-RF 4254 CG1771-RF 644..1543 17..914 4450 99.8 Plus
mew-RB 5001 CG1771-RB 644..1543 17..914 4450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13218064..13218666 914..314 2915 99.7 Minus
X 23542271 X 13219747..13219883 316..180 685 100 Minus
X 23542271 X 13220030..13220146 185..69 585 100 Minus
X 23542271 X 13224984..13225035 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:52:27 has no hits.

BS10262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:30 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-PA 1..900 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:26 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1771-PB 287..1191 11..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:56 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-RB 639..1543 11..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:17 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-RB 639..1543 11..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:17 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13218064..13218664 316..914 99 <- Minus
X 13219748..13219881 182..315 100 <- Minus
X 13220034..13220146 69..181 100 <- Minus
X 13224984..13225040 11..68 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:56 Download gff for BS10262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13112097..13112697 316..914 99 <- Minus
arm_X 13113781..13113914 182..315 100 <- Minus
arm_X 13114067..13114179 69..181 100 <- Minus
arm_X 13119017..13119073 11..68 96   Minus

BS10262.complete Sequence

3183 bp assembled on 2008-08-14

GenBank Submission: FJ636620

> BS10262.complete
GAAGTTATCAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGA
TCACCGATGGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGC
AATGACGAAATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAA
TCCCCTACAGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATC
GCTATATGTACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTAT
CTCCTAACGAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGG
ACGACCTGTGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCA
CATCGGCTGCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGA
CCGTACACATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTA
CCTGCAGCGCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATT
CGCCGGTGGACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGA
TTCTTTGGTCACATGTCATATGCGGCTGGAGCTCCACGATCCGAGGGTCA
TGGACAGGTGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGC
ACTCGATCCTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTG
GCAACCGCCGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGC
TCCTTTGTACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGA
ATATCCAGGATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCT
CTGGAGAGTCGTTTCGGTCTGGCGTTGGCCAATATCGGAGATCTGAACAA
GGATAACTGCGAGGATCTGGCCGTGGGAGCACCATACGAGGGCAACGGCG
TAGTCTACATCTACTTGGGCTCGAGTCAGGGCCTGAATTCCAAGCCCGCC
CAGAAGATCCAGGCCTCGGAACTGGGTGGAACCATACCCAATGGTCAACC
GATTCGTACCTTTGGCATCTCTATATCCGGCAACACGGACTTGGATGATA
ACTCCTATCCGGATGTGGTAATCGGAGCATTCAACTCCTCGGCAGCCGTA
ATCCTGCTGGCCAGACCTATCATCAGCATTCAGACGAGTGTACAGCGCAA
GGAGCTGCATAACATGGATCCCAATACGCCCGGCTGTTTGGACGATCCGG
CCAGTAATCTAACATGTTTCACGTTCAGAGCATGTTGCAGCATTGAACCG
TACGATGAGAAGAACAAGGAACTCCGGTTGGCTTATAGCGTCGAAGCGGA
AACCTTCGATCACCTAAAGAAATTCTCTCGCGTCTTCTTCTTCGATCGGG
AAAATAAGCGGACGAATGTGCTCAGTCGCGTGGTGAGAGTGCATACGAAT
GGAAGGACAGAATGCCAGGCAGTCACGGGCTACATCAAGGCCAATACCCG
GGATATCCAGACTCCCGTGCGTTTCCGCTTGAAGTACTCGCTGGTGGAAC
CCCCATTGGCGGATTCTGCTTTGGTACGCCTCAATCCGATATTGGATCAG
ACCCAGGCGCATGTCGATTTCGAGGGCACCTTCCAGAAAGACTGTGGCGA
TGACGATCTCTGTGAGAGCAATCTGATTATCCGGGTGGAGCCGAACATCA
CTGAGTCCTCAGGCAACGAATACACACTGATTCTGGATGAAACGGAACTG
GAGGTCCGCATCAATGTTAGCAATCTGGCGGATTCTGCTTACGAAGCTCA
ACTATTCATCGCCCATCAGGCGGGTGTTTCATATGTGGCAACCAAGAAGC
CGACGAATGCCACGTGCAATAGCTACAATACCACCCTGGTTGCCTGCAGT
CTTGGTAATCCCATGCTGCGCGACACCACCACATTTGTGACCATCCGATT
CCAGCCCAAAGGATTGGAGCCAAGTGAGAAGATCATGCTATTCCACATAT
TCGCAAATACCACCTCCAAGCTGGTGGGACCCGAACGTCCCGAGCGGGAT
CTTCGCGTGAATGTGGTGCGTCGGGCGAAGCTCAACTTCCGAGGTTGGGC
CATACCCGAGCAGAGTTTCTACAGTGGATCGAGTGTGGCTAATTCGGTTG
CAAATACTGCCGCCACCGATATAGAAGGACATGGTCCGATGGGTATGGAC
GATGTGGGCTCCCAAGTTCATCACATGTTCACCATTTTCAATGAGGGACC
ATCCACGGCGCCGAAGGTACAAATGGTCATCCATTGGCCATACTCACTGT
ACAGTGATCCACAGAGCGGTCGACCGGTTCAGTATCTACTCTATCTGGAG
CAAGTACCCACTGTGGAAGTTAGCCAGGGCGAATGCCATGTGGCCAAAGA
ATATGTCAATCCGCTGAATTTGGCCAGCGGTTCTAGGGAAAATCCAGCCT
ACTTGAGTGCTCCCGCCCAGATGAGAATGTTCCCCTCGCAGTCGCGTCAT
TCGTTCAACAAGAGCTTGATCCACTCGCAGAGAAGCTACTACTCCAGCAG
CCACCGGGATGATCATTCGGATGACACTCAATCGAACCGCAATCGTGTCC
GTCGCAGTTTCCTAGAACGGGTGACGCGCCTGGAGAGGTTAATGTACGAT
CCCGAGAGTAGCAATGCGGCGAATGGCAAGAAGCAGGACATCGTCGAGCT
GGACTGCAATAAGGGCGCGACCAACTGCGTGCGCATCGAGTGTGACATCC
TAAACATGCCCGCTTTGTCCGAGGCCCAGGTGGTGGTCAAGGCGCGCCTG
TGGAACTCGACGCTGGTCAGTGAGTATCCTCGGGTGGAAAGGGTCAGGAT
TTTCTCGACAGCCACGGCTCAAATACCCGAGAGCTATGGCGTCGAGGTGA
TGGATCACAATAACATAGAGGTGGAGACGCGGGCCTATCCGGAGTTAAGG
AACCAACAGCGCGACACATCGATACCGTGGCTGATTATCATCCTGGGCAT
CGTTGGTGGCCTGCTCCTCCTTGCGCTGGTCACCTATGTGCTGTGGAAGG
TAGGCTTCTTTAAGCGCATCCGACCCACCGATCCGACGTTAAGCGGCAAT
CTGGAGAAAATGAACGAGGAGAAGCCCTTCCTGGCGCCATCAAAGAATAC
GCATCACGTTTTCCTAAAAGCTTTCTAGACCAT

BS10262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3441 CG1771-PE 1..3147 17..3163 15735 100 Plus
mew-RF 3732 CG1771-PF 292..3438 17..3163 15735 100 Plus
mew-RB 3441 CG1771-PB 292..3438 17..3163 15735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3863 CG1771-RE 253..3399 17..3163 15735 100 Plus
mew-RF 4254 CG1771-RF 644..3790 17..3163 15735 100 Plus
mew-RB 5001 CG1771-RB 644..3790 17..3163 15735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13217267..13218666 1713..314 7000 100 Minus
X 23542271 X 13215916..13216987 2923..1852 5360 100 Minus
X 23542271 X 13215620..13215864 3163..2919 1225 100 Minus
X 23542271 X 13217061..13217202 1852..1711 710 100 Minus
X 23542271 X 13219747..13219883 316..180 685 100 Minus
X 23542271 X 13220030..13220146 185..69 585 100 Minus
X 23542271 X 13224984..13225035 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:20:09 has no hits.

BS10262.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:22 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 627..3785 11..3170 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:14 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 644..3791 17..3165 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:10 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 632..3779 17..3165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:01 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 644..3791 17..3165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:01 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
X 13215619..13215862 2921..3165 99 <- Minus
X 13215919..13216986 1853..2920 100 <- Minus
X 13217061..13217200 1713..1852 100 <- Minus
X 13217268..13218664 316..1712 100 <- Minus
X 13219748..13219881 182..315 100 <- Minus
X 13220034..13220146 69..181 100 <- Minus
X 13224984..13225035 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:14 Download gff for BS10262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13109652..13109895 2921..3165 99 <- Minus
arm_X 13109952..13111019 1853..2920 100 <- Minus
arm_X 13111094..13111233 1713..1852 100 <- Minus
arm_X 13111301..13112697 316..1712 100 <- Minus
arm_X 13113781..13113914 182..315 100 <- Minus
arm_X 13114067..13114179 69..181 100 <- Minus
arm_X 13119017..13119068 17..68 100   Minus

BS10262.pep Sequence

Translation from 16 to 3177

> BS10262.pep
MTQRFDDCEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQAN
GSGGKVIVCAHRYMYIVRENRYGQGLCYLLTNDLQFEEVHEPCKGRPVQR
QHEDYGLCQAGTSAALLDDDTMVLGSPGPYTWRGSIWVTQVGGEYLQRDK
TTYYSDHSDLNSPVDKYSYLGMSVTGGRFFGHMSYAAGAPRSEGHGQVVI
FDKSTDNPIPVHSILDGEQFGSSFGYELATADINGDHRPDLIVAAPLYFT
KTEGGAVYVYQNIQDTLPMKYTLKLTGPLESRFGLALANIGDLNKDNCED
LAVGAPYEGNGVVYIYLGSSQGLNSKPAQKIQASELGGTIPNGQPIRTFG
ISISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQRKELHNM
DPNTPGCLDDPASNLTCFTFRACCSIEPYDEKNKELRLAYSVEAETFDHL
KKFSRVFFFDRENKRTNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTP
VRFRLKYSLVEPPLADSALVRLNPILDQTQAHVDFEGTFQKDCGDDDLCE
SNLIIRVEPNITESSGNEYTLILDETELEVRINVSNLADSAYEAQLFIAH
QAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRFQPKGL
EPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQS
FYSGSSVANSVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPK
VQMVIHWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPL
NLASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDH
SDDTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKG
ATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTAT
AQIPESYGVEVMDHNNIEVETRAYPELRNQQRDTSIPWLIIILGIVGGLL
LLALVTYVLWKVGFFKRIRPTDPTLSGNLEKMNEEKPFLAPSKNTHHVFL
KAF*

BS10262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
mew-PE 1146 CG1771-PE 1..1049 1..1049 5516 100 Plus
mew-PF 1243 CG1771-PF 98..1146 1..1049 5516 100 Plus
mew-PB 1146 CG1771-PB 98..1146 1..1049 5516 100 Plus
mew-PA 1049 CG1771-PA 1..1049 1..1049 5516 100 Plus
mew-PD 1058 CG1771-PD 1..1058 1..1049 5491 99.1 Plus