Clone Sequence Records
BS10267.3prime Sequence
901 bp (796 high quality bases) assembled on 2006-04-19
> BS10267.3prime
ATGGTCTAGAAAGCTTTCAGACTGCCGCTGTCGGCCCAGGAGGAGTTGAG
ATACTCGTCGTCATCGTCTTGCTCAAGTTTCCTTGCACTGAGTTGGACGT
GGAGATAGCTCCGTTCTCCAGCGAATCCCTCGATAGCTCGTCGGCCATCT
GGACTTTCAGCTGGTGACCGAACGAGTTGATCTCCGAGTTGGGCGTCATC
TGCGAGCCCGCCGGACTCTGCGCGATGTACGGACCCGGCGTGGTGACGGA
GCCACCCTGCGATATGGAGGCGGTCATGCCGGGACCGCCGTTGGGCAGGA
CACCCTCCAGACAACTGTCGTTGGTGGTTGAGTCCATGTTAATGATTTGG
CTACCGGCCACATTGTCCGCCAGGACTGCACCATCGCTGTCGTCCACGGC
ATCGATATCATCGATGTCCATGTCTTCGGCGTTCTTGTCCAACGGCGCCG
TCTCCTCATCCTCGTTGTATATCTTGAAGTAGGCATACGTCAGATAAATC
ACCGAGATGATGAACGAGGGTATTGGAATGGCCATCGAGTAGACCAAGTT
TAGGGTGTTCTGCCAGTAGTCCAGGTCGCTGATGACCAGACTTGGGTCCA
CCTTGGAGTAGTAGCAGGGGAACTTCATGCCGATCTTGGTGTACCTCTTT
AGCCAGATGGTACAGTTGAGCATTGGCGGGTAGCCACAGCCCTTTACATT
CGGAAAGAGCCTGGCTCCCACATAGTAGTACATGGAGCGGTTCCCCATCA
GGCCCTCGTTCAGCTCGGAGATCTCGTCGAACGGCCTCCGCTCGTCCGAA
ATGAGGGTACCCGAAGCGCTCAGACCGCGCGTATCCTCCGAATCCTCAAT
GAGGTAGCCATTGGAGCCGTCGGCATCCCCAAAATTGAGCTGTTTCATCC
G
BS10267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1232-PA | 1359 | tipE-RA | 475..1359 | 901..17 | 4400 | 99.8 | Minus |
| CG1232-PB | 1359 | tipE-RB | 475..1359 | 901..17 | 4400 | 99.8 | Minus |
| CG18675-PA | 876 | CG18675-RA | 762..828 | 81..15 | 335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tipE-RB | 3938 | CG1232-RB | 1521..2407 | 901..15 | 4420 | 99.9 | Minus |
| tipE-RA | 3396 | CG1232-RA | 1667..2553 | 901..15 | 4420 | 99.9 | Minus |
| CG18675-RA | 1608 | CG18675-RA | 831..897 | 81..15 | 335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4191066..4191886 | 901..81 | 4090 | 99.9 | Minus |
| 3L | 28110227 | 3L | 4192191..4192257 | 81..15 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:14:52 has no hits.
BS10267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:40 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-PB | 475..1359 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:40 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1232-PB | 475..1359 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:26 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1667..2559 | 6..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:48 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1667..2559 | 6..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:48 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4191066..4191886 | 81..901 | 99 | -> | Minus |
| 3L | 4192192..4192263 | 6..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:26 Download gff for
BS10267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4191066..4191886 | 81..901 | 99 | -> | Minus |
| arm_3L | 4192192..4192263 | 6..80 | 94 | | Minus |
BS10267.5prime Sequence
917 bp (857 high quality bases) assembled on 2006-04-19
> BS10267.5prime
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCACCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGCAGAACACCCTAAACTTGGTC
TACTCGATGGCCATTCCAATACCCTCGTTCATCATCTCGGTGATTTATCT
GACGTATGCCTACTTCA
BS10267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1232-PA | 1359 | tipE-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
| CG1232-PB | 1359 | tipE-RB | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tipE-RB | 3938 | CG1232-RB | 1045..1947 | 15..917 | 4515 | 100 | Plus |
| tipE-RA | 3396 | CG1232-RA | 1191..2093 | 15..917 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4190590..4191492 | 15..917 | 4515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:39:57 has no hits.
BS10267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:42 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:41 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1232-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:36 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1191..2092 | 15..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:16 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1191..2092 | 15..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:16 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4190590..4191491 | 15..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:36 Download gff for
BS10267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4190590..4191491 | 15..916 | 100 | | Plus |
BS10267.complete Sequence
1391 bp (1391 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636621
> BS10267.complete
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCACCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGCAGAACACCCTAAACTTGGTC
TACTCGATGGCCATTCCAATACCCTCGTTCATCATCTCGGTGATTTATCT
GACGTATGCCTACTTCAAGATATACAACGAGGATGAGGAGACGGCGCCGT
TGGACAAGAACGCCGAAGACATGGACATCGATGATATCGATGCCGTGGAC
GACAGCGATGGTGCAGTCCTGGCGGACAATGTGGCCGGTAGCCAAATCAT
TAACATGGACTCAACCACCAACGACAGTTGTCTGGAGGGTGTCCTGCCCA
ACGGCGGTCCCGGCATGACCGCCTCCATATCGCAGGGTGGCTCCGTCACC
ACGCCGGGTCCGTACATCGCGCAGAGTCCGGCGGGCTCGCAGATGACGCC
CAACTCGGAGATCAACTCGTTCGGTCACCAGCTGAAAGTCCAGATGGCCG
ACGAGCTATCGAGGGATTCGCTGGAGAACGGAGCTATCTCCACGTCCAAC
TCAGTGCAAGGAAACTTGAGCAAGACGATGACGACGAGTATCTCAACTCC
TCCTGGGCCGACAGCGGCAGTCTGAAAGCTTTCTAGACCAT
BS10267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tipE-RB | 1359 | CG1232-PB | 1..1359 | 17..1375 | 6795 | 100 | Plus |
| tipE-RA | 1359 | CG1232-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
| CG18675-RA | 876 | CG18675-PA | 762..828 | 1311..1377 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tipE-RB | 3938 | CG1232-RB | 1045..2407 | 15..1377 | 6815 | 100 | Plus |
| tipE-RA | 3396 | CG1232-RA | 1191..2553 | 15..1377 | 6815 | 100 | Plus |
| CG18675-RA | 1608 | CG18675-RA | 831..897 | 1311..1377 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4190590..4191886 | 15..1311 | 6485 | 100 | Plus |
| 3L | 28110227 | 3L | 4192191..4192257 | 1311..1377 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:21:38 has no hits.
BS10267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:13 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RB | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:41 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RB | 1014..2382 | 15..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:53 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1193..2550 | 17..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:13 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RB | 1014..2382 | 15..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:46 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tipE-RA | 1193..2550 | 17..1374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:46 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4190592..4191886 | 17..1311 | 100 | -> | Plus |
| 3L | 4192192..4192254 | 1312..1374 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:53 Download gff for
BS10267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4190592..4191886 | 17..1311 | 100 | -> | Plus |
| arm_3L | 4192192..4192254 | 1312..1374 | 100 | | Plus |
BS10267.pep Sequence
Translation from 16 to 1374
> BS10267.pep
MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFM
QFEEVPALCETYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNL
YNFTDEFNFTEYHINLKEAERILPPVKRTDRYERALRSDYEYDNLGGGTG
LDIDLGAGRMEQLNFGDADGSNGYLIEDSEDTRGLSASGTLISDERRPFD
EISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGM
KFPCYYSKVDPSLVISDLDYWQNTLNLVYSMAIPIPSFIISVIYLTYAYF
KIYNEDEETAPLDKNAEDMDIDDIDAVDDSDGAVLADNVAGSQIINMDST
TNDSCLEGVLPNGGPGMTASISQGGSVTTPGPYIAQSPAGSQMTPNSEIN
SFGHQLKVQMADELSRDSLENGAISTSNSVQGNLSKTMTTSISTPPGPTA
AV*
BS10267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tipE-PB | 452 | CG1232-PB | 1..452 | 1..452 | 2385 | 100 | Plus |
| tipE-PA | 452 | CG1232-PA | 1..452 | 1..452 | 2385 | 100 | Plus |
| Teh2-PA | 309 | CG15004-PA | 73..166 | 3..96 | 224 | 45.7 | Plus |
| Teh2-PB | 313 | CG15004-PB | 73..166 | 3..96 | 224 | 45.7 | Plus |
| Teh1-PA | 279 | CG12806-PA | 37..143 | 8..110 | 206 | 42.1 | Plus |
| Teh2-PA | 309 | CG15004-PA | 196..271 | 226..299 | 163 | 42.1 | Plus |
| Teh2-PB | 313 | CG15004-PB | 196..271 | 226..299 | 163 | 42.1 | Plus |
