Clone Sequence Records
BS10269.complete Sequence
2297 bp assembled on 2009-12-07
GenBank Submission: KX803281
> BS10269.complete
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATG
TTTTGTGCTCAACAACTGCATGCGACTAGTAAAATGCCATCTATTTCTGT
GGATCCTCTGGATCGTGACTTGGCACCCGCGGAATCGGAAATATGGCGTG
GACTTAACTCCCTGCTCCAAATAGAGAGACTGCAGCGATATGTAACTTGC
TGGGATGTTCCCGGCAATTGGGCCAAAATTTTTGCGATTAGGGAGAATAC
TGCGAATGAAATTCCCTTGATGAATGGCCTGCGATCTGTATGCGCTATCT
GGATCATGGTCTTCCATGTGGTATGGTTCATGTACTTTACTGTCCACAAT
AAGACGGTGCTGATTTCGTATGCCGAACAGGCCTTCTTCCAATATGTCTC
GTCGGCTCCTCTGCTCGTGGATGTCTTCTTTACCATCAGTGGCTTCCTGC
AAACATTTAACTTCCTCAGGAACTCCCGGCAGTTGGAGGCAGTACGGCAA
AATAGCTTCAGCGAAAATCTAAAACTCTTTGGCAAACTGCTCTTCCATCG
TTATTTGCGTCTTGGACCTCTTTACCTGGTGGTCATGGCCACCGTGGACT
TGGTATACGCCTATATTGGAGATGTCTCAGTTTACCACATCAACGAGCGA
TTCGATGAGATGTGTACACGTCACTGGTGGCGCAATCTTTTGTTCATTCA
AAACCTCTTCGACCATCGGGACATGTGCGCCAATTGGAGTTGGTCCTTGG
CCTGCGAAATGCAGTTCTTTATCCTGGCCAACGCTCTGCTGTTCCTCTAT
GTGAAATATCCCAAGGTGGTAAAGTCTCTAGTGGTATCTTCTTTTGTGGC
CACCATCGCTTGGTCCTACGGCATCGGACTGAGCATCAAGTTCCAATTGT
CCTTCGACGCGGCCTTTGCCACTGGAACAGAGATCTATACATCGCCCTTC
GTAAGGGTCCTTCCATATATCCTGGGAGCTGTAACGGCTTGGCTATTGCA
AGAGAATCGAGTCCAGTTGGAGATCAGCGAGCAAAAGGAACGGGCATGCT
GGCACTTCGCCTTATTCGTCTTCTTCGCCTGCATTTATTCGACTGTCAAA
CGGGATCTTGGACCTCTGATGGCCATCACGCTTTTTGTGATGGGTCGCCT
GTTCTTTTCGCTTAGTGTATGCTGGATGATAGCGCGCAGCTGCGATGGCC
GGGGGGTGTGGTGGTCACGCCTGCTGGAGGCCAAGGGCTTCCAACATGTC
AGTCGACTGTCCTACGCCATTTACCTTCTCAATCCGCTGGTCATAGCGTT
ATTCTACAGTTTAACCAACGCGAGCACACATGCGGATCCTTTCATGCTGT
GCGTGGTGACCTGCGGCTTTGCTGTCATAGTCTACCTGGCTTCCATCCTC
TTTTCGCTGGCCTTTGAGCTGCCCTTCAGCAATCTTTCAAGTTTGCTAAA
TCGACGGCAGAGCAAGCCAAAATCGATTTAAAAGCTTTCTAGACCAT
BS10269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 2265 | CG11353-PB | 1..2265 | 17..2281 | 11325 | 100 | Plus |
CG11353-RA | 2265 | CG11353-PA | 1..2265 | 17..2281 | 11325 | 100 | Plus |
CG30471-RB | 2208 | CG30471-PB | 991..1512 | 1061..1582 | 975 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 578..2844 | 16..2282 | 11335 | 100 | Plus |
CG11353-RA | 2910 | CG11353-RA | 373..2639 | 16..2282 | 11335 | 100 | Plus |
CG30471-RB | 2435 | CG30471-RB | 1086..1607 | 1061..1582 | 975 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4536889..4537742 | 386..1239 | 4270 | 100 | Plus |
3L | 28110227 | 3L | 4538251..4538794 | 1606..2149 | 2720 | 100 | Plus |
3L | 28110227 | 3L | 4535993..4536363 | 16..386 | 1855 | 100 | Plus |
3L | 28110227 | 3L | 4537813..4538180 | 1238..1605 | 1840 | 100 | Plus |
3L | 28110227 | 3L | 4538866..4538999 | 2149..2282 | 670 | 100 | Plus |
2R | 25286936 | 2R | 15536492..15536837 | 1237..1582 | 545 | 77.2 | Plus |
2R | 25286936 | 2R | 15536250..15536428 | 1061..1239 | 445 | 83.2 | Plus |
2R | 25286936 | 2R | 15535596..15535983 | 392..779 | 365 | 72.9 | Plus |
2R | 25286936 | 2R | 15537536..15537622 | 2161..2247 | 210 | 82.8 | Plus |
2R | 25286936 | 2R | 15535384..15535525 | 245..386 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:25:07 has no hits.
BS10269.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:46 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RB | 570..2832 | 17..2279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:46 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 374..2636 | 17..2279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:12 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 372..2634 | 17..2279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:57 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 374..2636 | 17..2279 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:57 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4535994..4536363 | 17..386 | 100 | -> | Plus |
3L | 4536890..4537742 | 387..1239 | 100 | -> | Plus |
3L | 4537815..4538180 | 1240..1605 | 100 | -> | Plus |
3L | 4538251..4538794 | 1606..2149 | 100 | -> | Plus |
3L | 4538867..4538996 | 2150..2279 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:46 Download gff for
BS10269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4537815..4538180 | 1240..1605 | 100 | -> | Plus |
arm_3L | 4535994..4536363 | 17..386 | 100 | -> | Plus |
arm_3L | 4536890..4537742 | 387..1239 | 100 | -> | Plus |
arm_3L | 4538251..4538794 | 1606..2149 | 100 | -> | Plus |
arm_3L | 4538867..4538996 | 2150..2279 | 100 | | Plus |
BS10269.3prime Sequence
903 bp (842 high quality bases) assembled on 2006-04-19
> BS10269.3prime
ATGGTCTAGAAAGCTTTTAAATCGATTTTGGCTTGCTCTGCCGTCGATTT
AGCAAACTTGAAAGATTGCTGAAGGGCAGCTCAAAGGCCAGCGAAAAGAG
GATGGAAGCCAGGTAGACTATGACAGCAAAGCCGCAGGTCACCACGCACA
GCATGAAAGGATCCGCATGTGTGCTCGCGTTGGTTAAACTGTAGAATAAC
GCTATGACCAGCGGATTGAGAAGGTAAATGGCGTAGGACAGTCGACTGAC
ATGTTGGAAGCCCTTGGCCTCCAGCAGGCGTGACCACCACACCCCCCGGC
CATCGCAGCTGCGCGCTATCATCCAGCATACACTAAGCGAAAAGAACAGG
CGACCCATCACAAAAAGCGTGATGGCCATCAGAGGTCCAAGATCCCGTTT
GACAGTCGAATAAATGCAGGCGAAGAAGACGAATAAGGCGAAGTGCCAGC
ATGCCCGTTCCTTTTGCTCGCTGATCTCCAACTGGACTCGATTCTCTTGC
AATAGCCAAGCCGTTACAGCTCCCAGGATATATGGAAGGACCCTTACGAA
GGGCGATGTATAGATCTCTGTTCCAGTGGCAAAGGCCGCGTCGAAGGACA
ATTGGAACTTGATGCTCAGTCCGATGCCGTAGGACCAAGCGATGGTGGCC
ACAAAAGAAGATACCACTAGAGACTTTACCACCTTGGGATATTTCACATA
GAGGAACAGCAGAGCGTTGGCCAGGATAAAGAACTGCATTTCGCAGGCCA
AGGACCAACTCCAATTGGCGCACATGTCCCGATGGTCGAAGAGGTTTTGA
ATGAACAAAAGATTGCGCCACCAGTGACGTGTACACATCTCATCGAATCG
CTCGTTGATGTGGTAAACTGAGACATCTCCNATATAGGCGTATACCAAGT
CCA
BS10269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PA | 2265 | CG11353-RA | 1379..2265 | 903..17 | 4416 | 99.8 | Minus |
CG11353-PB | 2265 | CG11353-RB | 1379..2265 | 903..17 | 4416 | 99.8 | Minus |
CG30471-PA | 2202 | CG30471-RA | 2127..2174 | 98..51 | 140 | 91.6 | Minus |
CG30471-PA | 2202 | CG30471-RA | 1936..1962 | 289..263 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 1957..2844 | 903..16 | 4429 | 99.9 | Minus |
CG11353-RA | 2910 | CG11353-RA | 1752..2639 | 903..16 | 4429 | 99.9 | Minus |
CG30471-RB | 2435 | CG30471-RB | 1420..1607 | 903..716 | 404 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4538251..4538794 | 692..149 | 2720 | 100 | Minus |
3L | 28110227 | 3L | 4537970..4538180 | 903..693 | 1044 | 99.5 | Minus |
3L | 28110227 | 3L | 4538866..4538999 | 149..16 | 670 | 100 | Minus |
2R | 25286936 | 2R | 15536650..15536837 | 903..716 | 404 | 80.9 | Minus |
2R | 25286936 | 2R | 15537536..15537622 | 137..51 | 210 | 82.8 | Minus |
2R | 25286936 | 2R | 15537328..15537410 | 289..207 | 190 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:37:53 has no hits.
BS10269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:45 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PA | 1380..2265 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:46 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PB | 1380..2265 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:09 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 1753..2647 | 6..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:53 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 1753..2647 | 6..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:53 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4537971..4538180 | 693..902 | 99 | -> | Minus |
3L | 4538251..4538794 | 149..692 | 100 | -> | Minus |
3L | 4538867..4539007 | 6..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:09 Download gff for
BS10269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4537971..4538180 | 693..902 | 99 | -> | Minus |
arm_3L | 4538251..4538794 | 149..692 | 100 | -> | Minus |
arm_3L | 4538867..4539007 | 6..148 | 97 | | Minus |
BS10269.5prime Sequence
945 bp (873 high quality bases) assembled on 2006-04-19
> BS10269.5prime
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATG
TTTTGTGCTCAACAACTGCATGCGACTAGTAAAATGCCATCTATTTCTGT
GGATCCTCTGGATCGTGACTTGCCACCCGCGGAATCGGAAATATG
BS10269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PA | 2265 | CG11353-RA | 1..929 | 17..945 | 4620 | 99.8 | Plus |
CG11353-PB | 2265 | CG11353-RB | 1..929 | 17..945 | 4620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 578..1507 | 16..945 | 4635 | 99.9 | Plus |
CG11353-RA | 2910 | CG11353-RA | 373..1302 | 16..945 | 4635 | 99.9 | Plus |
CG30471-RB | 2435 | CG30471-RB | 285..819 | 245..779 | 560 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4536889..4537448 | 386..945 | 2785 | 99.8 | Plus |
3L | 28110227 | 3L | 4535993..4536363 | 16..386 | 1855 | 100 | Plus |
2R | 25286936 | 2R | 15535596..15535983 | 392..779 | 365 | 72.9 | Plus |
2R | 25286936 | 2R | 15535384..15535525 | 245..386 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:40:02 has no hits.
BS10269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:46 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:48 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PB | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:40 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 369..1302 | 8..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:18 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 369..1302 | 8..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:18 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4535989..4536363 | 8..386 | 98 | -> | Plus |
3L | 4536890..4537448 | 387..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:40 Download gff for
BS10269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4535989..4536363 | 8..386 | 98 | -> | Plus |
arm_3L | 4536890..4537448 | 387..945 | 99 | | Plus |
BS10269.pep Sequence
Translation from 16 to 2280
> BS10269.pep
MEIRRTSRPYLWYTPVLMLLGLWLGSVLAKGASNQSATTNSHAWQRYHSQ
ALNASPALPDELEILDAPSTIEIHSPHETHLTRTSVIFGLTKVANESSVS
QKCHAQLRQMQRGILGKQPWAMKVLDASGTKPSGFVYGQNYWLGSREACR
GVQRPVGITLSKNFDRVMHYGIITQQAPFDMDYRVLYLRHNSPWQVEIKL
MSEQIIHIGLCLPSACSSVEVQSLAQDYVAGGMFTENEIFDIKPEVVYMK
DLQLKDEFFERASFRLLVACVLLTVTLMFCAQQLHATSKMPSISVDPLDR
DLAPAESEIWRGLNSLLQIERLQRYVTCWDVPGNWAKIFAIRENTANEIP
LMNGLRSVCAIWIMVFHVVWFMYFTVHNKTVLISYAEQAFFQYVSSAPLL
VDVFFTISGFLQTFNFLRNSRQLEAVRQNSFSENLKLFGKLLFHRYLRLG
PLYLVVMATVDLVYAYIGDVSVYHINERFDEMCTRHWWRNLLFIQNLFDH
RDMCANWSWSLACEMQFFILANALLFLYVKYPKVVKSLVVSSFVATIAWS
YGIGLSIKFQLSFDAAFATGTEIYTSPFVRVLPYILGAVTAWLLQENRVQ
LEISEQKERACWHFALFVFFACIYSTVKRDLGPLMAITLFVMGRLFFSLS
VCWMIARSCDGRGVWWSRLLEAKGFQHVSRLSYAIYLLNPLVIALFYSLT
NASTHADPFMLCVVTCGFAVIVYLASILFSLAFELPFSNLSSLLNRRQSK
PKSI*
BS10269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PB | 754 | CG11353-PB | 1..754 | 1..754 | 3952 | 100 | Plus |
CG11353-PA | 754 | CG11353-PA | 1..754 | 1..754 | 3952 | 100 | Plus |
CG30471-PB | 735 | CG30471-PB | 7..734 | 16..753 | 2599 | 65.3 | Plus |
CG12990-PA | 663 | CG12990-PA | 37..657 | 96..751 | 748 | 29.3 | Plus |
CG32645-PB | 853 | CG32645-PB | 442..850 | 346..750 | 459 | 26 | Plus |