Clone Sequence Records
BS10270.complete Sequence
1934 bp assembled on 2009-12-07
GenBank Submission: KX802179
> BS10270.complete
GAAGTTATCAGTCGACATGGCGCTTAAGCGGCACAAGCACCACATCGGCA
CCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGGATTTTCTGGCCATT
GCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTTTCGAAGGGCGCCCA
GGTGATCATTCGCATGCGGGGATTACCATACGACGCCACCGCCAAGCAAG
TGCTGGACTTCTTCACCACTGGGGATACTCCGCCCTGCCATGTTCTTGAC
GGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGATGGACGGGCCACGGG
TGATGCCTTCGTGCTATTCGCAAACGAGACGGATGCGCCCAAGGCGCTGG
GCCGGCACCGTGAATCCATTGGGCAGCGGTACATTGAGCTATTCCGTTCC
ACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCGATGGACCCCAAGAA
CTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTTGATTGCCCAACTGC
CCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTGCCCACAGCCTCAGC
CACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCCCCCGTGCCACCTCC
CGCTCTCCCTCTCCCCACACAGCACCTCATCACCTCGGGCACCACCAAGA
ACTGCATCCGACTGCGCGGACTGCCCTACGAGGCGATGGTCGAGCACATT
CTGCATTTCCTCGATGACTTTGCAAAGCACATCATTTATCAAGGTGTCCA
TATGGTTATCAATGCACAGGGCCAGCCAAGCGGTGAGGCCTTTATCCAGA
TGGACTTGGAGGAGTCAGCGCGTCTGTGTGCTCAGCGCAGGCACAACCAT
TATATGATGTTCGGCAAGAAGTATCGGTACATCGAGGTGTTCCAGTGTTC
CGGGGACGACATGAACATGGTCCTCAACGGAGGTCTGGCCTCACCGGTGG
CACAACCACCGCCGCCTCACCTTGGCCACGCTCACAAGCAGCAATCACTG
CTGGCCGCCACTACGGGTATGTTCAGTTCGGCGGGTCAGTCGCCGACGAC
CGTAGCCGCCGGTACCGCTCAGTCGCCGCTGGGCGGCACTCATACACACA
CTCACCCGCACTCTCATGCGCATGCGCACGCCACGGGCCACGCCCATGCG
GCAGCCGCCGCCGCCCACCACGGATTGTCCGCCTCATCGGCTATGTTGCC
GGGACTTTCGGCTGCCGCTTCCGCATCCGGTTTGGCCTCCTTCATGTCAG
CTGGTCAGCAGTCGGCAGCTGCAGCTGCTCATTCCGCTGCTTCGTTGCAA
AATGCCGCGGTGGCCTTGGCACCTCAGGGTTACGCCCTCAATCCTTTCTC
GCTGCCGCCGCCAGGATCTGCGGCTGCTGCAGCAGCTTCCACACCCGCCC
TGCTGGCCCAACAACAGGCTCAGTTCATAGCCCAGCAAAGTTTGTTGGTG
CGACAGCAGGCTGCAGCTGCTGCCTTGGCCGCTGAACAGCAGCAGCAACA
ACAGCAGCAGCAACAGCTCTATGCCAGTGCAATGCTGCAACAGCATCCGC
TGTACCTGCAACAGCAGCAGCAACAACAGCAACTCTATGCCAGTGCCATG
TTGCAACAAGGTCAGCCGCAATTCGTGCTCATGCAGAGGCCTTCGGCCGC
CTACCTGCCGCCCTTTCCGCTCAGCTATATGTCAGCAGCGGGGGCGGCAT
CGGGCGTTGGAGTGGCGCCAGGAGCAGCAGTTGCTGGAGCGGCAGCAGCC
GCATCGCCTTCCGCCAGCAACTCCTCGCTGAGTCAATCGATGAAGCGCTC
GTACGAGAACGCCTTTCAGCAGGAGGCAGCCGGAGCGGCAGCGGCGGCCA
GTGCTGCTAAGCGGGCCTTAACCCGGCAGCCCAGCAGTGTTTACTCGTAC
TATAATTCGGGAATCTAGAAGCTTTCTAGACCAT
BS10270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 2904 | CG8205-PD | 999..2904 | 13..1918 | 9530 | 100 | Plus |
| fus-RF | 2904 | CG8205-PF | 999..2904 | 13..1918 | 9530 | 100 | Plus |
| fus-RE | 2904 | CG8205-PE | 999..2904 | 13..1918 | 9530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 5256 | CG8205-RD | 1345..3252 | 13..1920 | 9540 | 100 | Plus |
| fus-RF | 5243 | CG8205-RF | 1332..3239 | 13..1920 | 9540 | 100 | Plus |
| fus-RB | 4375 | CG8205-RB | 464..2371 | 13..1920 | 9540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15662020..15663172 | 1920..768 | 5765 | 100 | Minus |
| 2R | 25286936 | 2R | 15663231..15663799 | 770..202 | 2845 | 100 | Minus |
| 2R | 25286936 | 2R | 15663919..15664108 | 202..13 | 950 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6911 | 1450..1640 | 266 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2461 | 1433..1620 | 264 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6855 | 1486..1620 | 258 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 1380..1589 | 253 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6829 | 1485..1582 | 251 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6881 | 1450..1583 | 247 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6896 | 1450..1583 | 243 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2403 | 1487..1583 | 241 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2490 | 1400..1583 | 237 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 1485..1583 | 229 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2885 | 1485..1609 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2628..2838 | 1362..1577 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2540 | 1376..1609 | 183 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 1494..1583 | 181 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6690..6797 | 1468..1583 | 174 | 65.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..588 | 1494..1597 | 170 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2882 | 1494..1786 | 167 | 56.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 602..760 | 1611..1450 | 163 | 63.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3315 | 1490..1583 | 159 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2851 | 1488..1620 | 157 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6820 | 1520..1621 | 153 | 65.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 96..195 | 1465..1572 | 149 | 67.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9126..9225 | 1465..1572 | 149 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2376 | 1534..1583 | 142 | 76 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2119 | 1490..1588 | 142 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2367 | 1538..1583 | 140 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2352 | 1485..1583 | 135 | 62.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 862..1012 | 1427..1584 | 135 | 58.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..173 | 1534..1583 | 133 | 74 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9203 | 1534..1583 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1578 | 1535..1583 | 128 | 73.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1088 | 1550..1583 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6947 | 1559..1786 | 123 | 55.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1103 | 1535..1583 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5614..5677 | 1520..1584 | 116 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6553 | 1485..1579 | 115 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6761 | 1529..1583 | 113 | 67.3 | Plus |
BS10270.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:02 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1335..3236 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:16 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 468..2369 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:44 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1335..3236 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:28 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 468..2369 | 17..1918 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:28 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15663919..15664104 | 17..202 | 100 | | Minus |
| 2R | 15662022..15663170 | 770..1918 | 100 | <- | Minus |
| 2R | 15663232..15663798 | 203..769 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:16 Download gff for
BS10270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11549527..11550675 | 770..1918 | 100 | <- | Minus |
| arm_2R | 11550737..11551303 | 203..769 | 100 | <- | Minus |
| arm_2R | 11551424..11551609 | 17..202 | 100 | | Minus |
BS10270.3prime Sequence
932 bp (890 high quality bases) assembled on 2006-04-19
> BS10270.3prime
ATGGTCTAGAAAGCTTCTAGATTCCCGAATTATAGTACGAGTAAACACTG
CTGGGCTGCCGGGTTAAGGCCCGCTTAGCAGCACTGGCCGCCGCTGCCGC
TCCGGCTGCCTCCTGCTGAAAGGCGTTCTCGTACGAGCGCTTCATCGATT
GACTCAGCGAGGAGTTGCTGGCGGAAGGCGATGCGGCTGCTGCCGCTCCA
GCAACTGCTGCTCCTGGCGCCACTCCAACGCCCGATGCCGCCCCCGCTGC
TGACATATAGCTGAGCGGAAAGGGCGGCAGGTAGGCGGCCGAAGGCCTCT
GCATGAGCACGAATTGCGGCTGACCTTGTTGCAACATGGCACTGGCATAG
AGTTGCTGTTGTTGCTGCTGCTGTTGCAGGTACAGCGGATGCTGTTGCAG
CATTGCACTGGCATAGAGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGTT
CAGCGGCCAAGGCAGCAGCTGCAGCCTGCTGTCGCACCAACAAACTTTGC
TGGGCTATGAACTGAGCCTGTTGTTGGGCCAGCAGGGCGGGTGTGGAAGC
TGCTGCAGCAGCCGCAGATCCTGGCGGCGGCAGCGAGAAAGGATTGAGGG
CGTAACCCTGAGGTGCCAAGGCCACCGCGGCATTTTGCAACGAAGCAGCG
GAATGAGCAGCTGCAGCTGCCGACTGCTGACCAGCTGACATGAAGGAGGC
CAAACCGGATGCGGAAGCGGCAGCCGAAAGTCCCGGCAACATAGCCGATG
AGGCGGACAATCCGTGGTGGGCGGCGGCGGCTGCCGCATGGGCGTGGCCC
GTGGCGTGCGCATGCGCATGAGAGTGCGGGTGAGTGTGTGTATGAGTGCC
GCCCAGCGGCGACTGAGCGGTACCGGCGGCTACGGTCGTCGGCGACTGAC
CCGCCGAACTGAACATACCCCTAGTGGCGGCC
BS10270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8205-PE | 2904 | fus-RE | 1989..2904 | 932..17 | 4555 | 99.8 | Minus |
| CG8205-PB | 1902 | fus-RB | 987..1902 | 932..17 | 4555 | 99.8 | Minus |
| CG8205-PF | 2904 | fus-RF | 1989..2904 | 932..17 | 4555 | 99.8 | Minus |
| CG8205-PD | 2904 | fus-RD | 1989..2904 | 932..17 | 4555 | 99.8 | Minus |
| CG9930-PA | 1575 | E5-RA | 636..662 | 377..351 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 5256 | CG8205-RD | 2335..3252 | 932..15 | 4575 | 99.9 | Minus |
| fus-RF | 5243 | CG8205-RF | 2322..3239 | 932..15 | 4575 | 99.9 | Minus |
| fus-RB | 4375 | CG8205-RB | 1454..2371 | 932..15 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15662020..15662937 | 15..932 | 4575 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-06 17:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6911 | 485..295 | 266 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2461 | 502..315 | 264 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6855 | 449..315 | 258 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 555..346 | 253 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6829 | 450..353 | 251 | 76.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6881 | 485..352 | 247 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6896 | 485..352 | 243 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2403 | 448..352 | 241 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2490 | 535..352 | 237 | 61.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 450..352 | 229 | 73.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2885 | 450..326 | 186 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2628..2838 | 573..358 | 184 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2540 | 559..326 | 183 | 59.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 441..352 | 181 | 70 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 513..637 | 474..357 | 175 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6690..6797 | 467..352 | 174 | 65.5 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..588 | 441..338 | 170 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2882 | 441..149 | 167 | 56.5 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 602..760 | 324..485 | 163 | 63.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3315 | 445..352 | 159 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2851 | 447..315 | 157 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6820 | 415..314 | 153 | 65.7 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 96..195 | 470..363 | 149 | 67.6 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9126..9225 | 470..363 | 149 | 67.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2376 | 401..352 | 142 | 76 | Minus |
| BS | 5142 | BS BS 5142bp | 2012..2119 | 445..347 | 142 | 64.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2367 | 397..352 | 140 | 78.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2352 | 450..352 | 135 | 62.4 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 862..1012 | 508..351 | 135 | 58.1 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..173 | 401..352 | 133 | 74 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9203 | 401..352 | 133 | 74 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1578 | 400..352 | 128 | 73.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1088 | 385..352 | 125 | 85.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6947 | 376..149 | 123 | 55.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1103 | 400..352 | 119 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2655 | 400..352 | 117 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5614..5677 | 415..351 | 116 | 68.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6553 | 450..356 | 115 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6761 | 406..352 | 113 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2331 | 377..352 | 112 | 92.3 | Minus |
BS10270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:47 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-PF | 1989..2904 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:49 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8205-PD | 1989..2904 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:04 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 1454..2377 | 5..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:25:56 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 1454..2377 | 5..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:25:56 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15662014..15662937 | 5..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:04 Download gff for
BS10270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11549519..11550442 | 5..932 | 99 | | Plus |
BS10270.5prime Sequence
889 bp (808 high quality bases) assembled on 2006-04-19
> BS10270.5prime
GAAGTTATCAGTCGACATGGCGCTTAAGCGGCACAAGCACCACATCGGCA
CCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGGATTTTCTGGCCATT
GCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTTTCGAAGGGCGCCCA
GGTGATCATTCGCATGCGGGGATTACCATACGACGCCACCGCCAAGCAAG
TGCTGGACTTCTTCACCACTGGGGATACTCCGCCCTGCCATGTTCTTGAC
GGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGATGGACGGGCCACGGG
TGATGCCTTCGTGCTATTCGCAAACGAGACGGATGCGCCCAAGGCGCTGG
GCCGGCACCGTGAATCCATTGGGCAGCGGTACATTGAGCTATTCCGTTCC
ACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCGATGGACCCCAAGAA
CTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTTGATTGCCCAACTGC
CCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTGCCCACAGCCTCAGC
CACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCCCCCGTGCCACCTCC
CGCTCTCCCTCTCCCCACACAGCACCTCATCACCTCGGGCACCACCAAGA
ACTGCATCCGACTGCGCGGACTGCCCTACGAGGCGATGGTCGAGCACATT
CTGCATTTCCTCGATGACTTTGCAAAGCACATCATTTATCAAGGTGTCCA
TATGGTTATCAATGCACAGGGCCAGCCAAGCGGTGAGGCCTTTATCCAGA
TGGACTTGGAGGAGTCAGCGCGTCTGTGTGCTCAGCGCAGGCACAACCAT
TATATGATGTTCGGGCAGAAGTATCGGTACATCGAGGTG
BS10270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8205-PE | 2904 | fus-RE | 999..1875 | 13..889 | 4335 | 99.7 | Plus |
| CG8205-PF | 2904 | fus-RF | 999..1875 | 13..889 | 4335 | 99.7 | Plus |
| CG8205-PD | 2904 | fus-RD | 999..1875 | 13..889 | 4335 | 99.7 | Plus |
| CG8205-PC | 2676 | fus-RC | 999..1875 | 13..889 | 4335 | 99.7 | Plus |
| CG8205-PB | 1902 | fus-RB | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG8205-PA | 1674 | fus-RA | 1..873 | 17..889 | 4315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RC | 3671 | CG8205-RC | 1345..2221 | 13..889 | 4355 | 99.8 | Plus |
| fus-RD | 5256 | CG8205-RD | 1345..2221 | 13..889 | 4355 | 99.8 | Plus |
| fus-RF | 5243 | CG8205-RF | 1332..2208 | 13..889 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15663231..15663799 | 770..202 | 2845 | 100 | Minus |
| 2R | 25286936 | 2R | 15663919..15664108 | 202..13 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 15663051..15663172 | 889..768 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:10:57 has no hits.
BS10270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:48 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-PF | 990..1875 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:51 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8205-PC | 990..1875 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:13 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1323..2208 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:31 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1323..2208 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:31 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15663051..15663170 | 770..889 | 98 | <- | Minus |
| 2R | 15663232..15663798 | 203..769 | 100 | <- | Minus |
| 2R | 15663919..15664116 | 1..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:13 Download gff for
BS10270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11550556..11550675 | 770..889 | 98 | <- | Minus |
| arm_2R | 11550737..11551303 | 203..769 | 100 | <- | Minus |
| arm_2R | 11551424..11551621 | 1..202 | 97 | | Minus |
BS10270.pep Sequence
Translation from 16 to 1917
> BS10270.pep
MALKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRM
RGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVL
FANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGG
GHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLP
TQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINA
QGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMN
MVLNGGLASPVAQPPPPHLGHAHKQQSLLAATTGMFSSAGQSPTTVAAGT
AQSPLGGTHTHTHPHSHAHAHATGHAHAAAAAAHHGLSASSAMLPGLSAA
ASASGLASFMSAGQQSAAAAAHSAASLQNAAVALAPQGYALNPFSLPPPG
SAAAAAASTPALLAQQQAQFIAQQSLLVRQQAAAAALAAEQQQQQQQQQQ
LYASAMLQQHPLYLQQQQQQQQLYASAMLQQGQPQFVLMQRPSAAYLPPF
PLSYMSAAGAASGVGVAPGAAVAGAAAAASPSASNSSLSQSMKRSYENAF
QQEAAGAAAAASAAKRALTRQPSSVYSYYNSGI*
BS10270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-PD | 967 | CG8205-PD | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PF | 967 | CG8205-PF | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PB | 633 | CG8205-PB | 1..633 | 1..633 | 3234 | 100 | Plus |
| fus-PE | 967 | CG8205-PE | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PA | 557 | CG8205-PA | 1..375 | 1..367 | 1783 | 92 | Plus |
