Clone Sequence Records
BS10273.5prime Sequence
889 bp (825 high quality bases) assembled on 2006-04-19
> BS10273.5prime
GAAGTTATCAGTCGACATGCTGCAGTACCAGCAACCGCAACAGCAACAAC
AACAGCAACAGTTACTGCAACAGGAGCAGCAACAGCAACTGCAACAGCAA
CAGCAGCAGCATCAGCATTTACTGCAGCAACAGCTGCCACAGCAGCGACG
TCAAACGTACAAGGAATACTTGCAACAGCATCAGCAGCAAAAGCAACAGC
AACAGCTGCAGCAACAGCAACAGAACAACCAGCCCCTGCGGATATTCCGC
GTCCACTACATCCGCCTGAATTCTAAGGACGGCGTACCGTCCCTCAACCA
GCAGGTCAATGGTTACCCCAATGGATCCCCAAATGGCTCCAAAATGAAGA
CCATAGCACCGAATATCCGCCGACGGCGTCGATGCGATAAGCACCATTTG
GAGCTCTACTGCAATGAGACCACCACGCCGCCCACAAATGTGCCCACTAA
TACCAGTGGCGGCAGCGGCAGCAGCAGTAATCAGTTGAAGCCCGGCGGCC
TGAGGATTCGGGAATGCATTACTGCACCGAGTACGGCGGCCAGTTCGCCG
GTGGACGAGCACATGTGCATCCCGGCACCGCCCATCACACCGCCGCCGGC
CTTCCTCACCGAGGGCTACAAACGGTCGAGCACTTCGGTCTCCACATCGG
CTTTGCCCAGTGCCACCAGCAGCCAGGAGACCCAGACGCAGAGCCAGACC
CAGAGCAGTACACAAACCCGGACCCACAACCAGAATCACATGCAGTGTAT
GAAACCGAACCTGATACGCCAGCAGAAGCCATTTCCCGTAGTTGCCAAGC
CACTGGGTCCGCAGAAGCCCAGGACGACGGCCACCATTGCGGTCACGTTG
AACAGCGGCTCCAACAAGCCACGTGCCACGGTCAAGAGG
BS10273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-PB | 2373 | CG32264-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RB | 4202 | CG32264-RB | 1655..2527 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3742003..3742875 | 889..17 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:24:21 has no hits.
BS10273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:53 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:57 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:48 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1647..2527 | 8..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:06:35 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1647..2527 | 8..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:06:35 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3742003..3742883 | 8..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:48 Download gff for
BS10273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3742003..3742883 | 8..889 | 99 | | Minus |
BS10273.3prime Sequence
882 bp (866 high quality bases) assembled on 2006-04-19
> BS10273.3prime
ATGGTCTAGAAAGCTTTCATGGCCTATGGAATCTCGTCAAATGCCGACTG
CCCTCGTGGACGGCCATTTCGGAGGACTTGAACTCGTTCAGCTCCTTGCG
AATGGCGGCCTTGTCCTTTGGCGTCAGTCTTGTCCACGGCTTGTCCGCCC
GCCGATCGTAGTCGTGGGCCTGCGTGACCTCGATGTAGTCGTTGAATCGG
ATGATCTTCTTCTCCTTCAGCTCCTCGACGGTCGGCCGAAAGCTGAGTTT
GCGCAACAGATACGACTTCTTCTCCTCCTTCTGCTTCTTCTCCTCGGCGG
GTGATTGAGTTTTCAAGATGTTGCGCTCGACCAGCTCCTCGGCCGTGGGT
CGCATGGACAGCCGCCGGATGAGGCGTGCTCCGATCGCCTCCTTGGACTC
CTTGAGCTCGTTGTCGTTGACCTGGTGCAGGATGTTGCGGTTGATCAGGT
CCTGCTTGTCCGGTCGGAGCTGCAGCTTCAGGGACAGCGACTCCTTGCGG
GCCAGTTTGGCCAGCCGGGTGTTGTCGTTGTCCTCGTCCCTGTAGACGAT
ATGGCCATCGCTGTCGTCACTATCGCTGCTGCTTTCGCGTATCACAAATG
GCCGGGCGTTCTCCTTGTTCTCCACGGTGCACGGCAATTGGATGTTGAAC
ATTTGCTGCCTGTTGAGCGAATAGTTATTGCCCGCCGCATCCTGGCGAAC
GACCAGCGGTCGTTGGTTGGCGGATTGTTGGGCCGCAGCTGCGGCAGCTG
CCGCCATCGAGCCAATACCGCCATTGCTGTTTGCCATGGCCGCTGCCGTT
GCCGCACTTCCCGCTCCATGTTCCTGGGTGGGCGTGACCGGCGTGGAGGC
GGAAGCGGGCTGCATACCGCCCTTCTTCTTCA
BS10273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-PB | 2373 | CG32264-RB | 1508..2373 | 882..17 | 4330 | 100 | Minus |
| CG32264-PD | 3027 | CG32264-RD | 2382..3027 | 662..17 | 3230 | 100 | Minus |
| CG32264-PC | 2310 | CG32264-RC | 1665..2310 | 662..17 | 3230 | 100 | Minus |
| CG32264-PA | 2814 | CG32264-RA | 2169..2814 | 662..17 | 3230 | 100 | Minus |
| CG32264-PD | 3027 | CG32264-RD | 2132..2351 | 882..663 | 1100 | 100 | Minus |
| CG32264-PC | 2310 | CG32264-RC | 1415..1634 | 882..663 | 1100 | 100 | Minus |
| CG32264-PA | 2814 | CG32264-RA | 1919..2138 | 882..663 | 1100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RM | 3767 | CG32264-RM | 2727..3592 | 882..17 | 4330 | 100 | Minus |
| CG32264-RL | 2798 | CG32264-RL | 1758..2623 | 882..17 | 4330 | 100 | Minus |
| CG32264-RK | 5535 | CG32264-RK | 2104..2969 | 882..17 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3718638..3718990 | 310..662 | 1765 | 100 | Plus |
| 3L | 28110227 | 3L | 3718196..3718472 | 33..309 | 1385 | 100 | Plus |
| 3L | 28110227 | 3L | 3722156..3722375 | 663..882 | 1100 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 877..942 | 547..612 | 123 | 65.2 | Plus |
BS10273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:52 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-PB | 1509..2373 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:53:55 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-PB | 1509..2373 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:52 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RK | 2105..2974 | 11..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:39 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RK | 2105..2974 | 11..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:39 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3718196..3718472 | 33..309 | 100 | <- | Plus |
| 3L | 3718638..3718990 | 310..662 | 100 | <- | Plus |
| 3L | 3722156..3722374 | 663..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:52 Download gff for
BS10273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3718196..3718472 | 33..309 | 100 | <- | Plus |
| arm_3L | 3718638..3718990 | 310..662 | 100 | <- | Plus |
| arm_3L | 3722156..3722374 | 663..881 | 100 | | Plus |
BS10273.complete Sequence
2405 bp assembled on 2008-08-15
GenBank Submission: KX804422
> BS10273.complete
GAAGTTATCAGTCGACATGCTGCAGTACCAGCAACCGCAACAGCAACAAC
AACAGCAACAGTTACTGCAACAGGAGCAGCAACAGCAACTGCAACAGCAA
CAGCAGCAGCATCAGCATTTACTGCAGCAACAGCTGCCACAGCAGCGACG
TCAAACGTACAAGGAATACTTGCAACAGCATCAGCAGCAAAAGCAACAGC
AACAGCTGCAGCAACAGCAACAGAACAACCAGCCCCTGCGGATATTCCGC
GTCCACTACATCCGCCTGAATTCTAAGGACGGCGTACCGTCCCTCAACCA
GCAGGTCAATGGTTACCCCAATGGATCCCCAAATGGCTCCAAAATGAAGA
CCATAGCACCGAATATCCGCCGACGGCGTCGATGCGATAAGCACCATTTG
GAGCTCTACTGCAATGAGACCACCACGCCGCCCACAAATGTGCCCACTAA
TACCAGTGGCGGCAGCGGCAGCAGCAGTAATCAGTTGAAGCCCGGCGGCC
TGAGGATTCGGGAATGCATTACTGCACCGAGTACGGCGGCCAGTTCGCCG
GTGGACGAGCACATGTGCATCCCGGCACCGCCCATCACACCGCCGCCGGC
CTTCCTCACCGAGGGCTACAAACGGTCGAGCACTTCGGTCTCCACATCGG
CTTTGCCCAGTGCCACCAGCAGCCAGGAGACCCAGACGCAGAGCCAGACC
CAGAGCAGTACACAAACCCGGACCCACAACCAGAATCACATGCAGTGTAT
GAAACCGAACCTGATACGCCAGCAGAAGCCATTTCCCGTAGTTGCCAAGC
CACTGGGTCCGCAGAAGCCCAGGACGACGGCCACCATTGCGGTCACGTTG
AACAGCGGCTCCAACAAGCCACGTGCCACGGTCAAGAGGAGTTTAGAACC
AAGAAAAGACAAGACTGATGCACAACAACAACAACACGGAGGCAATGGCA
CAATATCCACGCCCAACATCGAGCAGCCCACCTGCCAGGGCTCGATGCTG
CCGCCCCCCGGAGGCGGTGGCCATCACCAGGTGGACGGGAGTGGCAAGAT
GGAGCGGCCCAACACGCTCGCCGGCGCCAATAAGCTGACCCGTCGCGGGG
TCAACATCTGCTATCACAACGAGCACATGTATGGCGAAGATGGAAAAATG
GTGGGTGGTCCGCCGGGCAGCACTCCGCCCCCGTATCCGGGTGGCAAACT
ACCGCCGGGCGTAATGCTCAGCGAACTGCCGGAGCCGCCGATTCCGCTGT
CGGAGATCGGACCGATCCCACCGCCCCCGATGTTCTCCACTCCGAGTCCC
ACGCTCATCGCAGGACGACCGCACGGGCCAGGGGCCGTCAACGATCAGGA
TTATCAGCAGGACTACGACTACGATGATAACGATCCCGATCAGGATGAGC
TTGACTCGGACGATGAGTACGCCCCGTATGGTGGCAACCATGTGCGCATG
ATGGACACGCAACGCGTCGAGGAAATTCCAGCCAAAGAGCCCAAACCAAA
TGCAGTTCCTCTCAAGTCGGCGCTGAAGAAGAAGGGCGGTATGCAGCCCG
CTTCCGCCTCCACGCCGGTCACGCCCACCCAGGAACATGGAGCGGGAAGT
GCGGCAACGGCAGCGGCCATGGCAAACAGCAATGGCGGTATTGGCTCGAT
GGCGGCAGCTGCCGCAGCTGCGGCCCAACAATCCGCCAACCAACGACCGC
TGGTCGTTCGCCAGGATGCGGCGGGCAATAACTATTCGCTCAACAGGCAG
CAAATGTTCAACATCCAATTGCCGTGCACCGTGGAGAACAAGGAGAACGC
CCGGCCATTTGTGATACGCGAAAGCAGCAGCGATAGTGACGACAGCGATG
GCCATATCGTCTACAGGGACGAGGACAACGACAACACCCGGCTGGCCAAA
CTGGCCCGCAAGGAGTCGCTGTCCCTGAAGCTGCAGCTCCGACCGGACAA
GCAGGACCTGATCAACCGCAACATCCTGCACCAGGTCAACGACAACGAGC
TCAAGGAGTCCAAGGAGGCGATCGGAGCACGCCTCATCCGGCGGCTGTCC
ATGCGACCCACGGCCGAGGAGCTGGTCGAGCGCAACATCTTGAAAACTCA
ATCACCCGCCGAGGAGAAGAAGCAGAAGGAGGAGAAGAAGTCGTATCTGT
TGCGCAAACTCAGCTTTCGGCCGACCGTCGAGGAGCTGAAGGAGAAGAAG
ATCATCCGATTCAACGACTACATCGAGGTCACGCAGGCCCACGACTACGA
TCGGCGGGCGGACAAGCCGTGGACAAGACTGACGCCAAAGGACAAGGCCG
CCATTCGCAAGGAGCTGAACGAGTTCAAGTCCTCCGAAATGGCCGTCCAC
GAGGGCAGTCGGCATTTGACGAGATTCCATAGGCCATGAAAGCTTTCTAG
ACCAT
BS10273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RB | 2373 | CG32264-PB | 1..2373 | 17..2389 | 11865 | 100 | Plus |
| CG32264-RJ | 1530 | CG32264-PJ | 36..1530 | 895..2389 | 7475 | 100 | Plus |
| CG32264-RM | 2784 | CG32264-PM | 1291..2784 | 896..2389 | 7470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RB | 4202 | CG32264-RB | 1655..4027 | 17..2389 | 11865 | 100 | Plus |
| CG32264-RJ | 2609 | CG32264-RJ | 940..2434 | 895..2389 | 7475 | 100 | Plus |
| CG32264-RG | 2418 | CG32264-RG | 749..2243 | 895..2389 | 7475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3741996..3742875 | 896..17 | 4400 | 100 | Minus |
| 3L | 28110227 | 3L | 3722156..3722523 | 1743..1376 | 1840 | 100 | Minus |
| 3L | 28110227 | 3L | 3718638..3718990 | 2096..1744 | 1765 | 100 | Minus |
| 3L | 28110227 | 3L | 3718196..3718472 | 2373..2097 | 1385 | 100 | Minus |
| 3L | 28110227 | 3L | 3722856..3723105 | 1380..1131 | 1235 | 99.6 | Minus |
| 3L | 28110227 | 3L | 3723639..3723874 | 1130..895 | 1180 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 877..942 | 1859..1794 | 123 | 65.2 | Minus |
BS10273.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:11 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1734..4119 | 8..2395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:10 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1655..4026 | 17..2388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:15 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1742..4113 | 17..2388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:44 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RB | 1655..4026 | 17..2388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:44 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3722860..3723105 | 1131..1376 | 100 | <- | Minus |
| 3L | 3723639..3723872 | 897..1130 | 100 | <- | Minus |
| 3L | 3718196..3718472 | 2097..2373 | 100 | <- | Minus |
| 3L | 3718638..3718990 | 1744..2096 | 100 | <- | Minus |
| 3L | 3722156..3722522 | 1377..1743 | 100 | <- | Minus |
| 3L | 3741996..3742875 | 17..896 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:10 Download gff for
BS10273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3718196..3718472 | 2097..2373 | 100 | <- | Minus |
| arm_3L | 3718638..3718990 | 1744..2096 | 100 | <- | Minus |
| arm_3L | 3722156..3722522 | 1377..1743 | 100 | <- | Minus |
| arm_3L | 3722860..3723105 | 1131..1376 | 100 | <- | Minus |
| arm_3L | 3723639..3723872 | 897..1130 | 100 | <- | Minus |
| arm_3L | 3741996..3742875 | 17..896 | 100 | | Minus |
BS10273.pep Sequence
Translation from 16 to 2388
> BS10273.pep
MLQYQQPQQQQQQQQLLQQEQQQQLQQQQQQHQHLLQQQLPQQRRQTYKE
YLQQHQQQKQQQQLQQQQQNNQPLRIFRVHYIRLNSKDGVPSLNQQVNGY
PNGSPNGSKMKTIAPNIRRRRRCDKHHLELYCNETTTPPTNVPTNTSGGS
GSSSNQLKPGGLRIRECITAPSTAASSPVDEHMCIPAPPITPPPAFLTEG
YKRSSTSVSTSALPSATSSQETQTQSQTQSSTQTRTHNQNHMQCMKPNLI
RQQKPFPVVAKPLGPQKPRTTATIAVTLNSGSNKPRATVKRSLEPRKDKT
DAQQQQHGGNGTISTPNIEQPTCQGSMLPPPGGGGHHQVDGSGKMERPNT
LAGANKLTRRGVNICYHNEHMYGEDGKMVGGPPGSTPPPYPGGKLPPGVM
LSELPEPPIPLSEIGPIPPPPMFSTPSPTLIAGRPHGPGAVNDQDYQQDY
DYDDNDPDQDELDSDDEYAPYGGNHVRMMDTQRVEEIPAKEPKPNAVPLK
SALKKKGGMQPASASTPVTPTQEHGAGSAATAAAMANSNGGIGSMAAAAA
AAAQQSANQRPLVVRQDAAGNNYSLNRQQMFNIQLPCTVENKENARPFVI
RESSSDSDDSDGHIVYRDEDNDNTRLAKLARKESLSLKLQLRPDKQDLIN
RNILHQVNDNELKESKEAIGARLIRRLSMRPTAEELVERNILKTQSPAEE
KKQKEEKKSYLLRKLSFRPTVEELKEKKIIRFNDYIEVTQAHDYDRRADK
PWTRLTPKDKAAIRKELNEFKSSEMAVHEGSRHLTRFHRP*
BS10273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-PB | 790 | CG32264-PB | 1..790 | 1..790 | 4158 | 100 | Plus |
| CG32264-PM | 927 | CG32264-PM | 423..927 | 286..790 | 2627 | 98.6 | Plus |
| CG32264-PL | 759 | CG32264-PL | 255..759 | 286..790 | 2627 | 98.6 | Plus |
| CG32264-PK | 822 | CG32264-PK | 318..822 | 286..790 | 2627 | 98.6 | Plus |
| CG32264-PE | 998 | CG32264-PE | 494..998 | 286..790 | 2627 | 98.6 | Plus |
