Clone BS10275 Report

Search the DGRC for BS10275

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptsprt-RA
Protein status:BS10275.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10275.3prime Sequence

916 bp (741 high quality bases) assembled on 2006-04-19

> BS10275.3prime
ATGGTCTAGAAAGCTTCTAGATGAGCTTGTGCCTGCCGAGGGAAGCCGTG
TGCATGGGACTGCAGTTCTCGATGAGCATGGTCTGGCCCTCTCCAGTCGG
TGATTCTCCACCTTTGTTGTTGTTGTTGTTGTTGTGGTGGACCCTCTTCA
TGGGCCGCTTTCGTTCGATATCCGCACAGGGGTGCAGCTCCACGGTCTGC
AGACTTTGGGCTCGTTGCAGCGATAGCCGGAGGGGTTTCTTGGGCGGAGT
GGGTCTAGTGGTACGCGTCTCAGTCGCAGGCTTCGATTCGTTTTCGCTAT
CGAAATCCAGGGATTTTACACTCCTCATATCGCTGGGCAGGCGGGCTCGA
AGTGTGTTCGACTCACTTTGTCGGGGCGTGTCTCGGCGACGATCCAGTCC
ATTGTAATGATTCAGGTGCTCTACACTGCGTGCGTGCGTGCTCATGAGAT
GTTCGCGATGCAGTTGCTGCTGTTGCTGGAGAGGATCTCTGGGGCGTTCC
CGGTGCTGGCGATCGCGATGGCGCTCCTTATCACGTCGATGGTGCTGCAT
ATAGGCAGAATCGCTATTAATCGAGATCTTCGAGGCGGACAGCGATTTGG
AGGGCATGGAGTACATGTGCGACAGACGATCTCTCAAATCGATGTGGGTA
TTCTCCTTGATCAGTGTTTTGGTTACATGTCCGGGAGGGGTTTGTGTCGA
GGCCATGTCGTCACCCATCAGCTCGATGGGTTTGCCCCCCACCAAAGTGG
TAATATAGTTGCCCCGCTGAAAGATCAACGGTTTCTCGGGCGGTGTTGAT
GGAGGTGATGATATGCTGATGCTGGTCACATGCTGAGATTGATTGGAGGA
TGTCTGCTGTGGATTTTGCTGTGGATTTTGCTGTGGATTTTGCTGGTGCT
GCTGCTGCTGCTGCTG

BS10275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30023-PA 1905 sprt-RA 1006..1905 916..17 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-RA 2795 CG30023-RA 1578..2479 916..15 4495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11385556..11386073 399..916 2575 99.8 Plus
2R 25286936 2R 11385059..11385443 15..399 1925 100 Plus
Blast to na_te.dros performed 2015-02-10 19:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2535 916..792 195 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2412 548..448 127 58.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6900 547..459 120 62.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2529 547..448 116 62 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6864 548..453 111 57.3 Minus

BS10275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:57 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
sprt-PA 1006..1905 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:02 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30023-PA 1006..1905 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:48 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1578..2479 15..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:00 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1578..2479 15..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:00 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11385059..11385442 15..398 100 <- Plus
2R 11385556..11386073 399..916 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:48 Download gff for BS10275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7272564..7272947 15..398 100 <- Plus
arm_2R 7273061..7273578 399..916 99   Plus

BS10275.5prime Sequence

856 bp (835 high quality bases) assembled on 2006-04-19

> BS10275.5prime
GAAGTTATCAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTT
CCGCGCATCATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATT
CTCAATCCGAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGAC
TGCAGAGACGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATT
GTTCCACAACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTC
TCCTCGCGATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCA
GGATCGGGAGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCA
AACTGCCACGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCG
GCTGAGCAAAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAAT
TAAGATCAAGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACA
ACATAGACATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGA
GAAGAACTCCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGC
ACGTCTGGAAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCA
GCTCTGGAGTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGA
TGGGCAGTTCAACAGAGGACAGACCAGCCGGGTTTCTACGTAGAATGGGC
TTTAGAGGGTGATGGCTTGTACAAGGGCGATCGCATTTTGGAGATCAACG
GACGACTGGTAACCGGAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGGA
AACTCT

BS10275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30023-PA 1905 sprt-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-RA 2795 CG30023-RA 573..1412 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11386663..11387067 498..94 2025 100 Minus
2R 25286936 2R 11386239..11386596 856..499 1790 100 Minus
2R 25286936 2R 11391071..11391148 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:40:57 has no hits.

BS10275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:34:58 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
sprt-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:04 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30023-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:07 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 567..1412 12..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:59 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 567..1412 12..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:59 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11386239..11386596 499..856 100 <- Minus
2R 11386663..11387066 95..498 100 <- Minus
2R 11391071..11391154 12..94 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:07 Download gff for BS10275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7273744..7274101 499..856 100 <- Minus
arm_2R 7274168..7274571 95..498 100 <- Minus
arm_2R 7278576..7278659 12..94 96   Minus

BS10275.complete Sequence

1937 bp assembled on 2007-11-30

GenBank Submission: FJ636623

> BS10275.complete
GAAGTTATCAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTT
CCGCGCATCATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATT
CTCAATCCGAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGAC
TGCAGAGACGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATT
GTTCCACAACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTC
TCCTCGCGATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCA
GGATCGGGAGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCA
AACTGCCACGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCG
GCTGAGCAAAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAAT
TAAGATCAAGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACA
ACATAGACATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGA
GAAGAACTCCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGC
ACGTCTGGAAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCA
GCTCTGGAGTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGA
TGGGCAGTTCAACAGAGGACAGACCAGCCGGGTTTCTACGTAGAATGGGC
TTTAGAGGGTGATGGCTTGTACAAGGGCGATCGCATTTTGGAGATCAACG
GACGACTGGTAACCGGAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGGA
AACTCTGGCAAGTGTCAGATGGTTGTACTCCGCAAGAAGTCCGTACCTAT
ACCACAAAAGCAACTAGACCAGGAGAAGGAGAACAACATGAGGCTGCAGC
ATCGCATATCGTACCTGGAAGAGCAGGTGCGAGAACTGCAGACAGTCAAG
GAGCATCATCCATCGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAAAA
TCCACAGCAAAATCCACAGCAAAATCCACAGCAGACATCCTCCAATCAAT
CTCAGCATGTGACCAGCATCAGCATATCATCACCTCCATCAACACCGCCC
GAGAAACCGTTGATCTTTCAGCGGGGCAACTATATTACCACTTTGGTGGG
GGGCAAACCCATCGAGCTGATGGGTGACGACATGGCCTCGACACAAACCC
CTCCCGGACATGTAACCAAAACACTGATCAAGGAGAATACCCACATCGAT
TTGAGAGATCGTCTGTCGCACATGTACTCCATGCCCTCCAAATCGCTGTC
CGCCTCGAAGATCTCGATTAATAGCGATTCTGCCTATATGCAGCACCATC
GACGTGATAAGGAGCGCCATCGCGATCGCCAGCACCGGGAACGCCCCAGA
GATCCTCTCCAGCAACAGCAGCAACTGCATCGCGAACATCTCATGAGCAC
GCACGCACGCAGTGTAGAGCACCTGAATCATTACAATGGACTGGATCGTC
GCCGAGACACGCCCCGACAAAGTGAGTCGAACACACTTCGAGCCCGCCTG
CCCAGCGATATGAGGAGTGTAAAATCCCTGGATTTCGATAGCGAAAACGA
ATCGAAGCCTGCGACTGAGACGCGTACCACTAGACCCACTCCGCCCAAGA
AACCCCTCCGGCTATCGCTGCAACGAGCCCAAAGTCTGCAGACCGTGGAG
CTGCACCCCTGTGCGGATATCGAACGAAAGCGGCCCATGAAGAGGGTCCA
CCACAACAACAACAACAACAACAAAGGTGGAGAATCACCGACTGGAGAGG
GCCAGACCATGCTCATCGAGAACTGCAGTCCCATGCACACGGCTTCCCTC
GGCAGGCACAAGCTCATCTAGAAGCTTTCTAGACCAT

BS10275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-RA 1905 CG30023-PA 1..1905 17..1921 9525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-RA 2795 CG30023-RA 573..2479 17..1923 9535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11385556..11386596 1539..499 5205 100 Minus
2R 25286936 2R 11386663..11387067 498..94 2025 100 Minus
2R 25286936 2R 11385059..11385443 1923..1539 1925 100 Minus
2R 25286936 2R 11391071..11391148 94..17 390 100 Minus
Blast to na_te.dros performed 2014-11-27 13:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2412 1390..1490 127 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2529 1391..1490 116 62 Plus

BS10275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:42 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 1..1905 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:38 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 565..2477 12..1923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:26 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 573..2477 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:35 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 571..2475 17..1921 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:31 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
sprt-RA 573..2477 17..1921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:31 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11385061..11385442 1540..1921 100 <- Minus
2R 11385556..11386596 499..1539 100 <- Minus
2R 11386663..11387066 95..498 100 <- Minus
2R 11391071..11391148 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:26 Download gff for BS10275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7272566..7272947 1540..1921 100 <- Minus
arm_2R 7273061..7274101 499..1539 100 <- Minus
arm_2R 7274168..7274571 95..498 100 <- Minus
arm_2R 7278576..7278653 17..94 100   Minus

BS10275.pep Sequence

Translation from 16 to 1920

> BS10275.pep
MDTGSVVSEPISAHHRAFAKQKSASMTILNPKGCGSAVKYSLHSTAETNQ
ETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAV
IQNLRIQLCLGKLPRPTGPPLDESEKPAAEQKLNRLKTEAENKRIKIKNL
KSALEKLDITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKS
KPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDG
LYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQL
DQEKENNMRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNP
QQNPQQTSSNQSQHVTSISISSPPSTPPEKPLIFQRGNYITTLVGGKPIE
LMGDDMASTQTPPGHVTKTLIKENTHIDLRDRLSHMYSMPSKSLSASKIS
INSDSAYMQHHRRDKERHRDRQHRERPRDPLQQQQQLHREHLMSTHARSV
EHLNHYNGLDRRRDTPRQSESNTLRARLPSDMRSVKSLDFDSENESKPAT
ETRTTRPTPPKKPLRLSLQRAQSLQTVELHPCADIERKRPMKRVHHNNNN
NNKGGESPTGEGQTMLIENCSPMHTASLGRHKLI*

BS10275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
sprt-PA 634 CG30023-PA 1..634 1..634 3265 100 Plus