Clone Sequence Records
BS10277.3prime Sequence
914 bp (813 high quality bases) assembled on 2006-04-19
> BS10277.3prime
ATGGTCTAGAAAGCTTTCACAGAGGCGTTGGCGCGGCGCTTAGCTGGAGC
TTCATATCGCACAGTTTCTTGATGTGAACCTGACCGGTAAGCTCCGCCTG
CCGCAGGATTCGCCGGATATCCGCCAATCGATCGTGCTTGTTGGCCAGCA
GATAGGCGGATTTAAGCTGCCCAATGTAGATGTAGGAGGAGACTCGTAGC
TCCACGCTGCCGATGCGTTTGATCAACCGATCCAGCATCTGTTTCGTCTC
CGGCGCACTGCTGTGCACAGCAGCATTAATGGCAATCGAGAGTATTTCAT
CGGACTCCGTGGAAATGTCTCCGCCGTTGTTGCTTCCTATGCAGTCCAGC
AGACGCTCTACCTCACCCAAGCGCTGATTTCTCGACAGGTACTTAGCAGT
GGCTCCAAACACCTTAAGTGCAGCCAGCTTGAAGTCCTGCATAATGCCGT
AAGCCAGGCCAAAACCTTCGTCTATGTTCTTACCGCACATGAGGATCAGA
ATGCAAATTTGTATCCGATCTGCGGCGCCTTCGAACAGAGTAGGTAGAGT
TCCTCGACTGGACTCTAGTCGAATCTGCTTCAGAGTTTGTATAGTTCGTA
GTGGCTCATCTGGCGGCTGTTCTCGCTCACACTTGTCCAAGAACTTAGCC
ACTTCCAACTGTCGCCGGATGGTATTGATGTGTCCATTGAGAGCCCTGGC
ATCCATTTGCATGGCGAAGCAGGCACCTCGAACGCTTGCTGTGCTACTCA
CGCTGTTTCTGCGAGCCTGCTGCCGCTGCAGGTGCTCCCATTCCGCCATA
TCCAGTTCACCCTGAAGATGCCTGAGGGCAGACAGCAAGTGCTGGGCGTT
GGCATGCAGCTTCTGAAAGTCTCGCACTGCAAGGCGTAGAACTTCACGCA
CGTCATGCTGGCCC
BS10277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-PB | 6732 | CG5270-RB | 5879..6732 | 870..17 | 4270 | 100 | Minus |
| CG5270-PA | 2913 | CG5270-RA | 2060..2913 | 870..17 | 4270 | 100 | Minus |
| CG5270-PB | 6732 | CG5270-RB | 5834..5878 | 914..870 | 225 | 100 | Minus |
| CG5270-PA | 2913 | CG5270-RA | 2015..2059 | 914..870 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-RB | 7465 | CG5270-RB | 6137..7035 | 914..17 | 4470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11429109..11429539 | 447..17 | 2155 | 100 | Minus |
| 3R | 32079331 | 3R | 11428523..11428863 | 914..575 | 1655 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11428923..11429052 | 576..447 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:18:48 has no hits.
BS10277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:01 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-PB | 5834..6732 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:09 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-PA | 2015..2913 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:45:22 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 6137..7035 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:56 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 6137..7035 | 17..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:56 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11428523..11428863 | 575..914 | 99 | -> | Minus |
| 3R | 11428925..11429052 | 447..574 | 100 | -> | Minus |
| 3R | 11429110..11429539 | 17..446 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:45:22 Download gff for
BS10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7254245..7254585 | 575..914 | 99 | -> | Minus |
| arm_3R | 7254647..7254774 | 447..574 | 100 | -> | Minus |
| arm_3R | 7254832..7255261 | 17..446 | 100 | | Minus |
BS10277.5prime Sequence
880 bp (772 high quality bases) assembled on 2006-04-19
> BS10277.5prime
GAAGTTATCAGTCGACATGGATACCAACGAGCGATCTCCGTTTTGGAAGC
TAATCCGTCATCCTTTGCTCATCGTAGAGCAGTTAGTGATGAATGCTCGC
TTTGAATTGCTGGGAAAGCTACTAGATGCGGCTCGTTCCAAGTTGCTAAA
GGAGAGACCACTTGGACCATGTCCGTACTGTTTTGACAAAACGGGCCATG
TCTATGATGTCCAGTCCAGTGCTGGTTTAGGAAGTGGAGCGGGAGAAACA
CCGGCAAAGATACGTTTTCAACTGGGACAAACAACATCCGAGGCTTTTAT
TCTGCTCAACTTCAATTCCTACCAGCAGGATCACTTTGTGGGTCAGGATT
GTTTGGACCTATTACTGCGAATTTACGCCAGCAAAGCTCTGGACTACCAT
GTGGCGAATGTGCGTGCTGCTTCTGAGCCCAGTTCTCTTGGCACAGATGT
ACATAATTCACTGGACTCTCTTTGTGGTGCCTTCGTGATGCCCAAGCAAG
CACCCAACCGACAGCAGTGGACGCGGGACGAGGAGGCCAGCCACTGCATG
TGCTGTCGCCGAGCAGCATTCACTATGTTGATGCGGAGACATCATTGCCG
TAGGTGCGGGCGGGTGGTATGCTACGCCTGCTCCACCCATCGAATACGCA
TCCCAGAGCTTTACGACGAGTTGGAGGTGCGGATCTGCAACGATTGTGCA
GCGTGCAGCACGCCTGCCAAGGATCAAGGTGATGGCACTTCTAGTGAGCG
GAGTGCTATCTCGGGACAAGTATCAAAATCTTCTGGACGGAGTGATTCCT
GCAAATGGCAGTTGAGTGGGATTATTACACACGATAAACTGCTGCGCGAG
GAGTTCTCCTATGAACACGCGCCCAGTGTG
BS10277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-PB | 6732 | CG5270-RB | 3820..4683 | 17..880 | 4320 | 100 | Plus |
| CG5270-PA | 2913 | CG5270-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-RB | 7465 | CG5270-RB | 4123..4986 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11426394..11427257 | 17..880 | 4320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:39:23 has no hits.
BS10277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:02 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-PB | 3820..4683 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:11 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:52:07 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 4123..4986 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:00 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 4123..4986 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:00 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11426394..11427257 | 17..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:52:07 Download gff for
BS10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7252116..7252979 | 17..880 | 100 | | Plus |
BS10277.complete Sequence
2945 bp assembled on 2007-11-30
GenBank Submission: FJ636624
> BS10277.complete
GAAGTTATCAGTCGACATGGATACCAACGAGCGATCTCCGTTTTGGAAGC
TAATCCGTCATCCTTTGCTCATCGTAGAGCAGTTAGTGATGAATGCTCGC
TTTGAATTGCTGGGAAAGCTACTAGATGCGGCTCGTTCCAAGTTGCTAAA
GGAGAGACCACTTGGACCATGTCCGTACTGTTTTGACAAAACGGGCCATG
TCTATGATGTCCAGTCCAGTGCTGGTTTAGGAAGTGGAGCGGGAGAAACA
CCGGCAAAGATACGTTTTCAACTGGGACAAACAACATCCGAGGCTTTTAT
TCTGCTCAACTTCAATTCCTACCAGCAGGATCACTTTGTGGGTCAGGATT
GTTTGGACCTATTACTGCGAATTTACGCCAGCAAAGCTCTGGACTACCAT
GTGGCGAATGTGCGTGCTGCTTCTGAGCCCAGTTCTCTTGGCACAGATGT
ACATAATTCACTGGACTCTCTTTGTGGTGCCTTCGTGATGCCCAAGCAAG
CACCCAACCGACAGCAGTGGACGCGGGACGAGGAGGCCAGCCACTGCATG
TGCTGTCGCCGAGCAGCATTCACTATGTTGATGCGGAGACATCATTGCCG
TAGGTGCGGGCGGGTGGTATGCTACGCCTGCTCCACCCATCGAATACGCA
TCCCAGAGCTTTACGACGAGTTGGAGGTGCGGATCTGCAACGATTGTGCA
GCGTGCAGCACGCCTGCCAAGGATCAAGGTGATGGCACTTCTAGTGAGCG
GAGTGCTATCTCGGGACAAGTATCAAAATCTTCTGGACGGAGTGATTCCT
GCAAATGGCAGTTGAGTGGGATTATTACACACGATAAACTGCTGCGCGAG
GAGTTCTCCTATGAACACGCGCCCAGTGTGGCCCTCAGTTTGTCCATACT
TCGCAATCATGTCGAGCAGCGCAGTTGCGTTGATTTGCTGCTCTTCCACT
GTCGCAAACTGGAAAAGCTAATTGTGCCCAATCCAGAGGTGGACTACGGT
TTGGTGGCCAAGATGATAAACTGTCTGGCTTTCGCCGCAAAAGTTCGTGG
CGCACCAGGAGAGCTGGAAAACATTCGTGAGCACTCGGAAATTATAATGG
CAGTGGTTCAGCAGGGCTGTGAGTCGCTGATCCCAACTGGACCGCTCAAT
AACCACAATCTGCGCAAGCTGGCTGACGCTTTGGTGGAAGCGGAGCACTG
GACTCTAGCTCTGGAAGTGCATCTGAAGTGTGGTTTCGCCACCACCGGCG
TAATGGCGGCCCACGGACTAGCCTGCCTTCGTGCTGGTTGCTATGATGCA
GCCCGAGAAAAGTTTGCGCACTGCATGACTCGCCTCTCAAGTGAGCAGCT
CAATAGCAGCATCTGTAAGAACATTTTCGGAGTGGCTTCTACGGAGGCAG
TGCTCTTGCCCAGAAAGCGACCACAGCGCGGACCGGCACTGCTTCAAGAA
ATCCTACAGTTGATAGCCGCCATTCCTCAAGTTCAAACCCAACCGGAGAC
CCTTCACCGAGCCTCACTTATTCGTAGTTCGAATACTTCTCTGGCCTCAC
TTTTCACACGACGTCGGGAGCCCTACGTTCAGCCACGTCCGCTCCAGGAA
CCGGCTTTGAACATCATGAACGCGCTGGCAGGACTCAAGAACCTAGCCAA
GGGACAGTATGGTGGCCAAATGCCAACTAGCGAGGAAAGTCGCCGGCAGG
AGCGTGGCTTCGAGGAATCACTGCACTATGTGCTTACCTATGGGAGTCAC
GCCGATATTCTCACCTTTCTGATGCGCCGCGAAGAGCTGCGGGCAGCACT
TCGCTACTGGCAGCACCAGCAGTTGGACGCGGATCTCTTTATCCATCACA
TATTCTACCCGCAGCTGGCCAACGGCGGCCTAAACGTTTTGATGGACGAA
CTGCAGCAGCTGGACGACGCTCAATTCACTGCCTGGCGTCTGCCACTACT
GCAGACCTGTCGACATCTGGAGCAGCAGCAGCAACTCAGTTCGCTGTACC
AACTGCAGCTGCTGCTAAAGGATCCCATCCGGGCCAGCATGACGTGCGTG
AAGTTCTACGCCTTGCAGTGCGAGAACTTTCAGAAGCTGCATGCCAACGC
CCAGCACTTGCTGTCTGCCCTCAGGCATCTTCAGGGTGAACTGGATATGG
CGGAATGGGAGCACCTGCAGCGGCAGCAGGCTCGCAGAAACAGCGTGAGT
AGCACAGCAAGCGTTCGAGGTGCCTGCTTCGCCATGCAAATGGATGCCAG
GGCTCTCAATGGACACATCAATACCATCCGGCGACAGTTGGAAGTGGCTA
AGTTCTTGGACAAGTGTGAGCGAGAACAGCCGCCAGATGAGCCACTACGA
ACTATACAAACTCTGAAGCAGATTCGACTAGAGTCCAGTCGAGGAACTCT
ACCTACTCTGTTCGAAGGCGCCGCAGATCGGATACAAATTTGCATTCTGA
TCCTCATGTGCGGTAAGAACATAGACGAAGGTTTTGGCCTGGCTTACGGC
ATTATGCAGGACTTCAAGCTGGCTGCACTTAAGGTGTTTGGAGCCACTGC
TAAGTACCTGTCGAGAAATCAGCGCTTGGGTGAGGTAGAGCGTCTGCTGG
ACTGCATAGGAAGCAACAACGGCGGAGACATTTCCACGGAGTCCGATGAA
ATACTCTCGATTGCCATTAATGCTGCTGTGCACAGCAGTGCGCCGGAGAC
GAAACAGATGCTGGATCGGTTGATCAAACGCATCGGCAGCGTGGAGCTAC
GAGTCTCCTCCTACATCTACATTGGGCAGCTTAAATCCGCCTATCTGCTG
GCCAACAAGCACGATCGATTGGCGGATATCCGGCGAATCCTGCGGCAGGC
GGAGCTTACCGGTCAGGTTCACATCAAGAAACTGTGCGATATGAAGCTCC
AGCTAAGCGCCGCGCCAACGCCTCTGTGAAAGCTTTCTAGACCAT
BS10277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-RB | 6732 | CG5270-PB | 3820..6732 | 17..2929 | 14565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-RB | 7465 | CG5270-RB | 4123..7035 | 17..2929 | 14565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11427792..11428863 | 1300..2371 | 5360 | 100 | Plus |
| 3R | 32079331 | 3R | 11426394..11427422 | 17..1045 | 5145 | 100 | Plus |
| 3R | 32079331 | 3R | 11429109..11429539 | 2499..2929 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 11427480..11427738 | 1043..1301 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 11428923..11429052 | 2370..2499 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:43 has no hits.
BS10277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:43 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RA | 1..2913 | 17..2929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:03 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RA | 35..2947 | 17..2929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:01 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 4123..7034 | 17..2928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:10 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RA | 35..2946 | 17..2928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:13 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5270-RB | 4123..7034 | 17..2928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:13 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11428925..11429052 | 2372..2499 | 100 | -> | Plus |
| 3R | 11426394..11427419 | 17..1042 | 100 | -> | Plus |
| 3R | 11427480..11427738 | 1043..1301 | 100 | -> | Plus |
| 3R | 11427794..11428863 | 1302..2371 | 100 | -> | Plus |
| 3R | 11429110..11429538 | 2500..2928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:01 Download gff for
BS10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7252116..7253141 | 17..1042 | 100 | -> | Plus |
| arm_3R | 7253202..7253460 | 1043..1301 | 100 | -> | Plus |
| arm_3R | 7253516..7254585 | 1302..2371 | 100 | -> | Plus |
| arm_3R | 7254647..7254774 | 2372..2499 | 100 | -> | Plus |
| arm_3R | 7254832..7255260 | 2500..2928 | 100 | | Plus |
BS10277.pep Sequence
Translation from 16 to 2928
> BS10277.pep
MDTNERSPFWKLIRHPLLIVEQLVMNARFELLGKLLDAARSKLLKERPLG
PCPYCFDKTGHVYDVQSSAGLGSGAGETPAKIRFQLGQTTSEAFILLNFN
SYQQDHFVGQDCLDLLLRIYASKALDYHVANVRAASEPSSLGTDVHNSLD
SLCGAFVMPKQAPNRQQWTRDEEASHCMCCRRAAFTMLMRRHHCRRCGRV
VCYACSTHRIRIPELYDELEVRICNDCAACSTPAKDQGDGTSSERSAISG
QVSKSSGRSDSCKWQLSGIITHDKLLREEFSYEHAPSVALSLSILRNHVE
QRSCVDLLLFHCRKLEKLIVPNPEVDYGLVAKMINCLAFAAKVRGAPGEL
ENIREHSEIIMAVVQQGCESLIPTGPLNNHNLRKLADALVEAEHWTLALE
VHLKCGFATTGVMAAHGLACLRAGCYDAAREKFAHCMTRLSSEQLNSSIC
KNIFGVASTEAVLLPRKRPQRGPALLQEILQLIAAIPQVQTQPETLHRAS
LIRSSNTSLASLFTRRREPYVQPRPLQEPALNIMNALAGLKNLAKGQYGG
QMPTSEESRRQERGFEESLHYVLTYGSHADILTFLMRREELRAALRYWQH
QQLDADLFIHHIFYPQLANGGLNVLMDELQQLDDAQFTAWRLPLLQTCRH
LEQQQQLSSLYQLQLLLKDPIRASMTCVKFYALQCENFQKLHANAQHLLS
ALRHLQGELDMAEWEHLQRQQARRNSVSSTASVRGACFAMQMDARALNGH
INTIRRQLEVAKFLDKCEREQPPDEPLRTIQTLKQIRLESSRGTLPTLFE
GAADRIQICILILMCGKNIDEGFGLAYGIMQDFKLAALKVFGATAKYLSR
NQRLGEVERLLDCIGSNNGGDISTESDEILSIAINAAVHSSAPETKQMLD
RLIKRIGSVELRVSSYIYIGQLKSAYLLANKHDRLADIRRILRQAELTGQ
VHIKKLCDMKLQLSAAPTPL*
BS10277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5270-PB | 2243 | CG5270-PB | 1274..2243 | 1..970 | 5024 | 100 | Plus |
| rush-PB | 316 | CG14782-PB | 149..207 | 168..227 | 158 | 43.3 | Plus |
| rush-PA | 316 | CG14782-PA | 149..207 | 168..227 | 158 | 43.3 | Plus |
