Clone BS10278 Report

Search the DGRC for BS10278

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG1698-RA
Protein status:BS10278.pep: full length peptide match
Sequenced Size:1997

Clone Sequence Records

BS10278.3prime Sequence

871 bp (838 high quality bases) assembled on 2006-04-19

> BS10278.3prime
ATGGTCTAGAAAGCTTCTAACCGAAGATATTGTCATAGATTTTGTGCCAG
ATACTGCTGCGCCGGAAGAGGGCGTTGGCGTTGCCCTCCTGAACGAACAG
TTGGTACCGCTTGAGGGTCTGCGGGTCGCTGGGTCCCCAGTTGGGCAGTG
GCTCAAAGGCTTTGCGGATGCGGGCCCAGAGACCCAAGTGCGAGGGCTGC
TTCCGCACGGCGGGAATGGCCCAGAAGAGCACCTGACCCACGCCAAAGGC
ACTGAGGCACCAACCGAAAACGTAAACACCCGATTGGTAGGTGTAATCCT
TGTACTTGAGGGGCTCGTACAGAACCAAGGTGTAGATGAGAATGGTGAGC
ATTAGCAGAGGAGTGACGACCGCCCAGCAGATGCGATAGTACAGCGAAGT
CTTGATGCCAATCATGAACTCCACGTCACGGCAGAGTCGCTTCACACCGT
AGATCCAGGCAATGGTCACCAGCTCGAAGATGGCCAGCACCAGGGCCACG
AACGTGACGCCAAAGTAGTCGACCAGGTTGAGCAGGAACTGGCCACCGGG
TGTGATGTACAGAAGGCCCAGAAAGTAGCCTACAATGGCTATACCAACCA
CCACAGTCCAGTTCTTCAGGTGTCCGAACTGATCCTTGATCACGGTGGAC
ATGCAGGAGGCCATGCCCACATTGCTGCCGATGCCCAGGACGAAGAGCAT
GAGGAAGAACAGCACGGAGAATAGCTGCGGCAGCCACTTAAACTTGGCAA
TGGCGTCCGGGTAAGATATGAAAGCCAGGCCCGGACCTCCATTGACCACA
CTAGCGATGTCGGTGGTGTTGTTCTCGTACGCCAGGTTGCCCAGAATCCC
GAAGATAATCACACCGGACAG

BS10278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PA 1965 CG1698-RA 1111..1965 871..17 4275 100 Minus
CG15279-PB 1920 CG15279-RB 1225..1256 721..690 135 96.8 Minus
CG15279-PA 1920 CG15279-RA 1225..1256 721..690 135 96.8 Minus
CG3252-PA 1926 CG3252-RA 1193..1244 732..681 135 90.3 Minus
CG15279-PC 2220 CG15279-RC 1525..1556 721..690 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 1360..2214 871..17 4275 100 Minus
CG1698-RA 4106 CG1698-RA 3220..4074 871..17 4275 100 Minus
CG4476-RB 2400 CG4476-RB 1385..1625 865..625 350 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9797055..9797655 871..271 3005 100 Minus
2R 25286936 2R 9797720..9797974 271..17 1275 100 Minus
3L 28110227 3L 9214045..9214285 865..625 350 76.3 Minus
2R 25286936 2R 12299643..12299818 681..856 250 76.1 Plus
2L 23513712 2L 14845858..14845982 653..777 235 79.2 Plus
Blast to na_te.dros performed on 2015-02-12 00:02:26 has no hits.

BS10278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:03 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1111..1965 17..871 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:12 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1111..1965 17..871 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:50:10 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 3220..4078 11..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:22 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 3220..4078 11..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:22 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9797721..9797978 11..270 98   Minus
2R 9797055..9797655 271..871 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:50:10 Download gff for BS10278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5684560..5685160 271..871 100 -> Minus
arm_2R 5685226..5685483 11..270 98   Minus

BS10278.5prime Sequence

926 bp (872 high quality bases) assembled on 2006-04-19

> BS10278.5prime
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACTTTGCCGGGCCGCCTTC

BS10278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PA 1965 CG1698-RA 1..903 17..919 4465 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 248..1158 15..926 4505 99.7 Plus
CG1698-RA 4106 CG1698-RA 2108..3018 15..926 4505 99.7 Plus
CG4476-RB 2400 CG4476-RB 521..874 260..613 480 76.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9795433..9795895 15..477 2315 100 Plus
2R 25286936 2R 9796296..9796530 475..709 1175 100 Plus
2R 25286936 2R 9796585..9796795 709..919 1025 99.1 Plus
3L 28110227 3L 9212984..9213201 260..477 475 81.2 Plus
2L 23513712 2L 14848711..14848890 439..260 240 75.6 Minus
Blast to na_te.dros performed on 2015-02-11 14:41:19 has no hits.

BS10278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:04 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1..909 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:14 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:40 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2108..3018 15..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:02 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2108..3018 15..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:02 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9796585..9796801 709..926 98   Plus
2R 9795433..9795894 15..476 100 -> Plus
2R 9796298..9796529 477..708 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:40 Download gff for BS10278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5682938..5683399 15..476 100 -> Plus
arm_2R 5683803..5684034 477..708 100 -> Plus
arm_2R 5684090..5684306 709..926 98   Plus

BS10278.complete Sequence

1997 bp assembled on 2008-08-15

GenBank Submission: KX802273

> BS10278.complete
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACCTTGCCGGGCGCCTTCGACGGCGTGCTGTACTTCCTGCGGC
CGCAATGGCACAAGCTCCTGGAACCGCAGGTCTGGTACGCCGCCGTCACC
CAGGTGTTCTTCTCACTGGCCATCTGCTTCGGGAACATCATCATGTACGC
CTCGTACAACCGCTTCGGCCACAACATTTACAGGGATGCCAATATCGTGA
CCACGCTGGACACCTTCACCTCCCTACTGTCCGGTGTGATTATCTTCGGG
ATTCTGGGCAACCTGGCGTACGAGAACAACACCACCGACATCGCTAGTGT
GGTCAATGGAGGTCCGGGCCTGGCTTTCATATCTTACCCGGACGCCATTG
CCAAGTTTAAGTGGCTGCCGCAGCTATTCTCCGTGCTGTTCTTCCTCATG
CTCTTCGTCCTGGGCATCGGCAGCAATGTGGGCATGGCCTCCTGCATGTC
CACCGTGATCAAGGATCAGTTCGGACACCTGAAGAACTGGACTGTGGTGG
TTGGTATAGCCATTGTAGGCTACTTTCTGGGCCTTCTGTACATCACACCC
GGTGGCCAGTTCCTGCTCAACCTGGTCGACTACTTTGGCGTCACGTTCGT
GGCCCTGGTGCTGGCCATCTTCGAGCTGGTGACCATTGCCTGGATCTACG
GTGTGAAGCGACTCTGCCGTGACGTGGAGTTCATGATTGGCATCAAGACT
TCGCTGTACTATCGCATCTGCTGGGCGGTCGTCACTCCTCTGCTAATGCT
CACCATTCTCATCTACACCTTGGTTCTGTACGAGCCCCTCAAGTACAAGG
ATTACACCTACCAATCGGGTGTTTACGTTTTCGGTTGGTGCCTCAGTGCC
TTTGGCGTGGGTCAGGTGCTCTTCTGGGCCATTCCCGCCGTGCGGAAGCA
GCCCTCGCACTTGGGTCTCTGGGCCCGCATCCGCAAAGCCTTTGAGCCAC
TGCCCAACTGGGGACCCAGCGACCCGCAGACCCTCAAGCGGTACCAACTG
TTCGTTCAGGAGGGCAACGCCAACGCCCTCTTCCGGCGCAGCAGTATCTG
GCACAAAATCTATGACAATATCTTCGGTTAGAAGCTTTCTAGACCAT

BS10278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 1965 CG1698-PB 1..1965 17..1981 9810 99.9 Plus
CG1698-RA 1965 CG1698-PA 1..1965 17..1981 9810 99.9 Plus
CG4476-RB 1890 CG4476-PB 729..1279 823..1373 895 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 248..2214 15..1981 9820 99.9 Plus
CG1698-RA 4106 CG1698-RA 2108..4074 15..1981 9820 99.9 Plus
CG4476-RB 2400 CG4476-RB 1075..1625 823..1373 895 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9797009..9797655 1081..1727 3235 100 Plus
2R 25286936 2R 9795433..9795895 15..477 2315 100 Plus
2R 25286936 2R 9796585..9796960 709..1084 1865 99.7 Plus
2R 25286936 2R 9797720..9797974 1727..1981 1275 100 Plus
2R 25286936 2R 9796296..9796530 475..709 1175 100 Plus
3L 28110227 3L 9213735..9214285 823..1373 895 77.5 Plus
3L 28110227 3L 9212984..9213201 260..477 475 81.2 Plus
2L 23513712 2L 14845858..14846376 1345..827 360 71.3 Minus
2R 25286936 2R 12299963..12300183 1053..833 280 75.1 Minus
X 23542271 X 5406459..5406949 1317..827 265 70.3 Minus
2R 25286936 2R 12299643..12299818 1317..1142 250 76.1 Minus
2L 23513712 2L 14848711..14848890 439..260 240 75.6 Minus
Blast to na_te.dros performed on 2014-11-27 23:38:56 has no hits.

BS10278.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:24:23 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2091..4061 15..1987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:28 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2110..4074 17..1981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:13 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2093..4057 17..1981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:23 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2110..4074 17..1981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:23 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9795435..9795894 17..476 100 -> Plus
2R 9796298..9796529 477..708 100 -> Plus
2R 9796585..9796959 709..1083 99 -> Plus
2R 9797012..9797655 1084..1727 100 -> Plus
2R 9797721..9797974 1728..1981 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:28 Download gff for BS10278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5682940..5683399 17..476 100 -> Plus
arm_2R 5683803..5684034 477..708 100 -> Plus
arm_2R 5684090..5684464 709..1083 99 -> Plus
arm_2R 5684517..5685160 1084..1727 100 -> Plus
arm_2R 5685226..5685479 1728..1981 100   Plus

BS10278.pep Sequence

Translation from 16 to 1980

> BS10278.pep
METTINNNNNDNGYMNQAYVGSLNASTISIPGAYKPNESSNGKKTLSEGS
GSAPPPGHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRF
PFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVYDFSP
IMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWSYCREEWGT
ECLDSGPQEASRATSLAGSGVRTTSAEFYFTNIILREKASIDDGIGYPSW
SLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLP
GAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRF
GHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGP
GLAFISYPDAIAKFKWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKD
QFGHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVDYFGVTFVALVLA
IFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIY
TLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWAIPAVRKQPSHLG
LWARIRKAFEPLPNWGPSDPQTLKRYQLFVQEGNANALFRRSSIWHKIYD
NIFG*

BS10278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PB 654 CG1698-PB 1..654 1..654 3444 100 Plus
CG1698-PA 654 CG1698-PA 1..654 1..654 3444 100 Plus
CG4476-PB 629 CG4476-PB 49..629 72..654 1981 63.3 Plus
CG15279-PA 639 CG15279-PA 17..639 41..654 1854 56 Plus
CG15279-PB 639 CG15279-PB 17..639 41..654 1854 56 Plus