Clone Sequence Records
BS10278.3prime Sequence
871 bp (838 high quality bases) assembled on 2006-04-19
> BS10278.3prime
ATGGTCTAGAAAGCTTCTAACCGAAGATATTGTCATAGATTTTGTGCCAG
ATACTGCTGCGCCGGAAGAGGGCGTTGGCGTTGCCCTCCTGAACGAACAG
TTGGTACCGCTTGAGGGTCTGCGGGTCGCTGGGTCCCCAGTTGGGCAGTG
GCTCAAAGGCTTTGCGGATGCGGGCCCAGAGACCCAAGTGCGAGGGCTGC
TTCCGCACGGCGGGAATGGCCCAGAAGAGCACCTGACCCACGCCAAAGGC
ACTGAGGCACCAACCGAAAACGTAAACACCCGATTGGTAGGTGTAATCCT
TGTACTTGAGGGGCTCGTACAGAACCAAGGTGTAGATGAGAATGGTGAGC
ATTAGCAGAGGAGTGACGACCGCCCAGCAGATGCGATAGTACAGCGAAGT
CTTGATGCCAATCATGAACTCCACGTCACGGCAGAGTCGCTTCACACCGT
AGATCCAGGCAATGGTCACCAGCTCGAAGATGGCCAGCACCAGGGCCACG
AACGTGACGCCAAAGTAGTCGACCAGGTTGAGCAGGAACTGGCCACCGGG
TGTGATGTACAGAAGGCCCAGAAAGTAGCCTACAATGGCTATACCAACCA
CCACAGTCCAGTTCTTCAGGTGTCCGAACTGATCCTTGATCACGGTGGAC
ATGCAGGAGGCCATGCCCACATTGCTGCCGATGCCCAGGACGAAGAGCAT
GAGGAAGAACAGCACGGAGAATAGCTGCGGCAGCCACTTAAACTTGGCAA
TGGCGTCCGGGTAAGATATGAAAGCCAGGCCCGGACCTCCATTGACCACA
CTAGCGATGTCGGTGGTGTTGTTCTCGTACGCCAGGTTGCCCAGAATCCC
GAAGATAATCACACCGGACAG
BS10278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PA | 1965 | CG1698-RA | 1111..1965 | 871..17 | 4275 | 100 | Minus |
CG15279-PB | 1920 | CG15279-RB | 1225..1256 | 721..690 | 135 | 96.8 | Minus |
CG15279-PA | 1920 | CG15279-RA | 1225..1256 | 721..690 | 135 | 96.8 | Minus |
CG3252-PA | 1926 | CG3252-RA | 1193..1244 | 732..681 | 135 | 90.3 | Minus |
CG15279-PC | 2220 | CG15279-RC | 1525..1556 | 721..690 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 1360..2214 | 871..17 | 4275 | 100 | Minus |
CG1698-RA | 4106 | CG1698-RA | 3220..4074 | 871..17 | 4275 | 100 | Minus |
CG4476-RB | 2400 | CG4476-RB | 1385..1625 | 865..625 | 350 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9797055..9797655 | 871..271 | 3005 | 100 | Minus |
2R | 25286936 | 2R | 9797720..9797974 | 271..17 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 9214045..9214285 | 865..625 | 350 | 76.3 | Minus |
2R | 25286936 | 2R | 12299643..12299818 | 681..856 | 250 | 76.1 | Plus |
2L | 23513712 | 2L | 14845858..14845982 | 653..777 | 235 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:02:26 has no hits.
BS10278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:03 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1111..1965 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:12 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1111..1965 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:50:10 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 3220..4078 | 11..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:22 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 3220..4078 | 11..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:22 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9797721..9797978 | 11..270 | 98 | | Minus |
2R | 9797055..9797655 | 271..871 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:50:10 Download gff for
BS10278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5684560..5685160 | 271..871 | 100 | -> | Minus |
arm_2R | 5685226..5685483 | 11..270 | 98 | | Minus |
BS10278.5prime Sequence
926 bp (872 high quality bases) assembled on 2006-04-19
> BS10278.5prime
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACTTTGCCGGGCCGCCTTC
BS10278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PA | 1965 | CG1698-RA | 1..903 | 17..919 | 4465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 248..1158 | 15..926 | 4505 | 99.7 | Plus |
CG1698-RA | 4106 | CG1698-RA | 2108..3018 | 15..926 | 4505 | 99.7 | Plus |
CG4476-RB | 2400 | CG4476-RB | 521..874 | 260..613 | 480 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9795433..9795895 | 15..477 | 2315 | 100 | Plus |
2R | 25286936 | 2R | 9796296..9796530 | 475..709 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9796585..9796795 | 709..919 | 1025 | 99.1 | Plus |
3L | 28110227 | 3L | 9212984..9213201 | 260..477 | 475 | 81.2 | Plus |
2L | 23513712 | 2L | 14848711..14848890 | 439..260 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:41:19 has no hits.
BS10278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:04 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:14 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:40 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2108..3018 | 15..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:02 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2108..3018 | 15..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:02 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9796585..9796801 | 709..926 | 98 | | Plus |
2R | 9795433..9795894 | 15..476 | 100 | -> | Plus |
2R | 9796298..9796529 | 477..708 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:40 Download gff for
BS10278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5682938..5683399 | 15..476 | 100 | -> | Plus |
arm_2R | 5683803..5684034 | 477..708 | 100 | -> | Plus |
arm_2R | 5684090..5684306 | 709..926 | 98 | | Plus |
BS10278.complete Sequence
1997 bp assembled on 2008-08-15
GenBank Submission: KX802273
> BS10278.complete
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACCTTGCCGGGCGCCTTCGACGGCGTGCTGTACTTCCTGCGGC
CGCAATGGCACAAGCTCCTGGAACCGCAGGTCTGGTACGCCGCCGTCACC
CAGGTGTTCTTCTCACTGGCCATCTGCTTCGGGAACATCATCATGTACGC
CTCGTACAACCGCTTCGGCCACAACATTTACAGGGATGCCAATATCGTGA
CCACGCTGGACACCTTCACCTCCCTACTGTCCGGTGTGATTATCTTCGGG
ATTCTGGGCAACCTGGCGTACGAGAACAACACCACCGACATCGCTAGTGT
GGTCAATGGAGGTCCGGGCCTGGCTTTCATATCTTACCCGGACGCCATTG
CCAAGTTTAAGTGGCTGCCGCAGCTATTCTCCGTGCTGTTCTTCCTCATG
CTCTTCGTCCTGGGCATCGGCAGCAATGTGGGCATGGCCTCCTGCATGTC
CACCGTGATCAAGGATCAGTTCGGACACCTGAAGAACTGGACTGTGGTGG
TTGGTATAGCCATTGTAGGCTACTTTCTGGGCCTTCTGTACATCACACCC
GGTGGCCAGTTCCTGCTCAACCTGGTCGACTACTTTGGCGTCACGTTCGT
GGCCCTGGTGCTGGCCATCTTCGAGCTGGTGACCATTGCCTGGATCTACG
GTGTGAAGCGACTCTGCCGTGACGTGGAGTTCATGATTGGCATCAAGACT
TCGCTGTACTATCGCATCTGCTGGGCGGTCGTCACTCCTCTGCTAATGCT
CACCATTCTCATCTACACCTTGGTTCTGTACGAGCCCCTCAAGTACAAGG
ATTACACCTACCAATCGGGTGTTTACGTTTTCGGTTGGTGCCTCAGTGCC
TTTGGCGTGGGTCAGGTGCTCTTCTGGGCCATTCCCGCCGTGCGGAAGCA
GCCCTCGCACTTGGGTCTCTGGGCCCGCATCCGCAAAGCCTTTGAGCCAC
TGCCCAACTGGGGACCCAGCGACCCGCAGACCCTCAAGCGGTACCAACTG
TTCGTTCAGGAGGGCAACGCCAACGCCCTCTTCCGGCGCAGCAGTATCTG
GCACAAAATCTATGACAATATCTTCGGTTAGAAGCTTTCTAGACCAT
BS10278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 1965 | CG1698-PB | 1..1965 | 17..1981 | 9810 | 99.9 | Plus |
CG1698-RA | 1965 | CG1698-PA | 1..1965 | 17..1981 | 9810 | 99.9 | Plus |
CG4476-RB | 1890 | CG4476-PB | 729..1279 | 823..1373 | 895 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 248..2214 | 15..1981 | 9820 | 99.9 | Plus |
CG1698-RA | 4106 | CG1698-RA | 2108..4074 | 15..1981 | 9820 | 99.9 | Plus |
CG4476-RB | 2400 | CG4476-RB | 1075..1625 | 823..1373 | 895 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9797009..9797655 | 1081..1727 | 3235 | 100 | Plus |
2R | 25286936 | 2R | 9795433..9795895 | 15..477 | 2315 | 100 | Plus |
2R | 25286936 | 2R | 9796585..9796960 | 709..1084 | 1865 | 99.7 | Plus |
2R | 25286936 | 2R | 9797720..9797974 | 1727..1981 | 1275 | 100 | Plus |
2R | 25286936 | 2R | 9796296..9796530 | 475..709 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 9213735..9214285 | 823..1373 | 895 | 77.5 | Plus |
3L | 28110227 | 3L | 9212984..9213201 | 260..477 | 475 | 81.2 | Plus |
2L | 23513712 | 2L | 14845858..14846376 | 1345..827 | 360 | 71.3 | Minus |
2R | 25286936 | 2R | 12299963..12300183 | 1053..833 | 280 | 75.1 | Minus |
X | 23542271 | X | 5406459..5406949 | 1317..827 | 265 | 70.3 | Minus |
2R | 25286936 | 2R | 12299643..12299818 | 1317..1142 | 250 | 76.1 | Minus |
2L | 23513712 | 2L | 14848711..14848890 | 439..260 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:38:56 has no hits.
BS10278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:24:23 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2091..4061 | 15..1987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:28 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2110..4074 | 17..1981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:13 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2093..4057 | 17..1981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:23 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2110..4074 | 17..1981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:23 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9795435..9795894 | 17..476 | 100 | -> | Plus |
2R | 9796298..9796529 | 477..708 | 100 | -> | Plus |
2R | 9796585..9796959 | 709..1083 | 99 | -> | Plus |
2R | 9797012..9797655 | 1084..1727 | 100 | -> | Plus |
2R | 9797721..9797974 | 1728..1981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:28 Download gff for
BS10278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5682940..5683399 | 17..476 | 100 | -> | Plus |
arm_2R | 5683803..5684034 | 477..708 | 100 | -> | Plus |
arm_2R | 5684090..5684464 | 709..1083 | 99 | -> | Plus |
arm_2R | 5684517..5685160 | 1084..1727 | 100 | -> | Plus |
arm_2R | 5685226..5685479 | 1728..1981 | 100 | | Plus |
BS10278.pep Sequence
Translation from 16 to 1980
> BS10278.pep
METTINNNNNDNGYMNQAYVGSLNASTISIPGAYKPNESSNGKKTLSEGS
GSAPPPGHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRF
PFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVYDFSP
IMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWSYCREEWGT
ECLDSGPQEASRATSLAGSGVRTTSAEFYFTNIILREKASIDDGIGYPSW
SLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLP
GAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRF
GHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGP
GLAFISYPDAIAKFKWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKD
QFGHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVDYFGVTFVALVLA
IFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIY
TLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWAIPAVRKQPSHLG
LWARIRKAFEPLPNWGPSDPQTLKRYQLFVQEGNANALFRRSSIWHKIYD
NIFG*
BS10278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PB | 654 | CG1698-PB | 1..654 | 1..654 | 3444 | 100 | Plus |
CG1698-PA | 654 | CG1698-PA | 1..654 | 1..654 | 3444 | 100 | Plus |
CG4476-PB | 629 | CG4476-PB | 49..629 | 72..654 | 1981 | 63.3 | Plus |
CG15279-PA | 639 | CG15279-PA | 17..639 | 41..654 | 1854 | 56 | Plus |
CG15279-PB | 639 | CG15279-PB | 17..639 | 41..654 | 1854 | 56 | Plus |