Clone Sequence Records
BS10279.3prime Sequence
938 bp (844 high quality bases) assembled on 2006-04-19
> BS10279.3prime
ATGGTCTAGAAAGCTTTCATGTGCGGTGGCCCACTCCGATGAGGATGACG
CTAAGCAGGAGCGCCAGGATGCTGAGGGCGTAGGCCCGGGTGGTGGCTGC
CGAGGATGTTACCGCCGAGGCCGACGATTCGCCATTTATTATGTTCAGCG
TTACGGTCGCACTGGGGCTATTCGACGGGCTACATGTGTAATTGCCTGTA
TCGCGCTTCTTGGCCGACTCGATGATTAATGAGCCAATCGTGCTCTGTCC
TTCGCCGGAGGCCTCCGGCAGGTTGGGATCCAGTTGCGTGCGGTGGCGCC
GGGAGTCGGCCGCCAGCTGCTCGGCGCCGTGGTACCACATGATGAACGTG
GGCGGCTCCAAGGCTCCGCGCACGATACAGCGGAGCACCACGTTGCTGCC
CGCCTTCACGTAGCGGTCCGGCTCTCCTAGGATCTCCGTGCGAGGAACCA
CAACTTGCAGCTGGACACGGGCGCTGACTTTGGGCTCCGTAGAGACCTGG
CACTCGTAGGAGCCGGCGTCCCGGGCCTGGACGTACTTAATCTGCAGGGT
CCAGTACTTGTCCGGCTGCTTGATGGCCAGGAATCGCTGGTCGGCTATGA
AGACGGCCCTGTCAACGGTCAAGATGTGCCCATCTCGCAGACGAATCCAG
GACACAGATTTGTTGCCCAGCTGTTTGACCCGACAGGGCAGATACGCGTG
TGTCCCGATCTGAGTGGTCACATTGGAAGTGGCGTAGCCATCCAGATAGG
GCTCCACGAGTCCCGATGTCGCCGACAGAGCGGATGCCTCCGGCAGAAGC
GAGGACACTTGAGCCAAACTGGAGAACGCGGTCGCCGATGATGGGTCGCC
GCTCTCATCGGAGCTGATGGCCGGGGAGGCTGCCGATGCCGATGANGTTC
CTGCTCCTTCTGATGTTCCTGCTCCGGGTCCAGATACC
BS10279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33202-PB | 1083 | dpr11-RB | 162..1083 | 938..17 | 4566 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1231..2152 | 938..17 | 4584 | 99.8 | Minus |
dpr11-RB | 3519 | CG33202-RB | 1231..2152 | 938..17 | 4584 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545933 | 678..938 | 1279 | 99.2 | Plus |
3R | 32079331 | 3R | 6532636..6532845 | 239..448 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 6538307..6538470 | 448..611 | 820 | 100 | Plus |
3R | 32079331 | 3R | 6531668..6531784 | 17..133 | 585 | 100 | Plus |
3R | 32079331 | 3R | 6531945..6532052 | 132..239 | 540 | 100 | Plus |
3R | 32079331 | 3R | 6542570..6542642 | 608..680 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:57:54 has no hits.
BS10279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:06 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-PB | 162..1083 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:15 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33202-PB | 162..1083 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:46 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1231..2158 | 9..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:53 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1231..2158 | 9..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:53 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6545675..6545933 | 680..938 | 99 | | Plus |
3R | 6531662..6531783 | 9..132 | 96 | <- | Plus |
3R | 6531946..6532051 | 133..238 | 100 | <- | Plus |
3R | 6532636..6532844 | 239..447 | 100 | <- | Plus |
3R | 6538307..6538467 | 448..608 | 100 | <- | Plus |
3R | 6542571..6542641 | 609..679 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:46 Download gff for
BS10279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2357384..2357505 | 9..132 | 96 | <- | Plus |
arm_3R | 2357668..2357773 | 133..238 | 100 | <- | Plus |
arm_3R | 2358358..2358566 | 239..447 | 100 | <- | Plus |
arm_3R | 2364029..2364189 | 448..608 | 100 | <- | Plus |
arm_3R | 2368293..2368363 | 609..679 | 100 | <- | Plus |
arm_3R | 2371397..2371655 | 680..938 | 99 | | Plus |
BS10279.5prime Sequence
838 bp (837 high quality bases) assembled on 2006-04-19
> BS10279.5prime
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGAT
BS10279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33202-PB | 1083 | dpr11-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1070..1891 | 17..838 | 4110 | 100 | Plus |
dpr11-RB | 3519 | CG33202-RB | 1070..1891 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545974 | 438..137 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 6532675..6532845 | 838..668 | 855 | 100 | Minus |
3R | 32079331 | 3R | 6538307..6538470 | 668..505 | 820 | 100 | Minus |
3R | 32079331 | 3R | 6566135..6566255 | 137..17 | 605 | 100 | Minus |
3R | 32079331 | 3R | 6542570..6542642 | 508..436 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:36:56 has no hits.
BS10279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:07 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:16 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33202-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:43 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..1891 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:13 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..1891 | 10..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:13 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6532675..6532844 | 669..838 | 100 | <- | Minus |
3R | 6538307..6538467 | 508..668 | 100 | <- | Minus |
3R | 6542571..6542641 | 437..507 | 100 | <- | Minus |
3R | 6545675..6545973 | 138..436 | 100 | <- | Minus |
3R | 6566135..6566260 | 10..137 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:43 Download gff for
BS10279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2358397..2358566 | 669..838 | 100 | <- | Minus |
arm_3R | 2364029..2364189 | 508..668 | 100 | <- | Minus |
arm_3R | 2368293..2368363 | 437..507 | 100 | <- | Minus |
arm_3R | 2371397..2371695 | 138..436 | 100 | <- | Minus |
arm_3R | 2391857..2391982 | 10..137 | 96 | | Minus |
BS10279.complete Sequence
1115 bp (1115 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636625
> BS10279.complete
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGATCCCAACCTGCCG
GAGGCCTCCGGCGAAGGACAGAGCACGATTGGCTCATTAATCATCGAGTC
GGCCAAGAAGCGCGATACAGGCAATTACACATGTAGCCCGTCGAATAGCC
CCAGTGCGACCGTAACGCTGAACATAATAAATGGCGAATCGTCGGCCTCG
GCGGTAACATCCTCGGCAGCCACCACCCGGGCCTACGCCCTCAGCATCCT
GGCGCTCCTGCTTAGCGTCATCCTCATCGGAGTGGGCCACCGCACATGAA
AGCTTTCTAGACCAT
BS10279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 1083 | CG33202-PC | 1..1083 | 17..1099 | 5415 | 100 | Plus |
dpr11-RB | 1083 | CG33202-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1070..2152 | 17..1099 | 5415 | 100 | Plus |
dpr11-RB | 3519 | CG33202-RB | 1070..2152 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545974 | 438..137 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 6532636..6532845 | 877..668 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 6538307..6538470 | 668..505 | 820 | 100 | Minus |
3R | 32079331 | 3R | 6566135..6566255 | 137..17 | 605 | 100 | Minus |
3R | 32079331 | 3R | 6531668..6531784 | 1099..983 | 585 | 100 | Minus |
3R | 32079331 | 3R | 6531945..6532052 | 984..877 | 540 | 100 | Minus |
3R | 32079331 | 3R | 6542570..6542642 | 508..436 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:55:25 has no hits.
BS10279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:16 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1..1083 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:45 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2151 | 17..1098 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:49 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2151 | 17..1098 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:16 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..2158 | 10..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:59 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1070..2151 | 17..1098 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:59 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6566135..6566255 | 17..137 | 100 | | Minus |
3R | 6531946..6532051 | 878..983 | 100 | <- | Minus |
3R | 6532636..6532844 | 669..877 | 100 | <- | Minus |
3R | 6538307..6538467 | 508..668 | 100 | <- | Minus |
3R | 6542571..6542641 | 437..507 | 100 | <- | Minus |
3R | 6545675..6545973 | 138..436 | 100 | <- | Minus |
3R | 6531669..6531783 | 984..1098 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:49 Download gff for
BS10279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2357668..2357773 | 878..983 | 100 | <- | Minus |
arm_3R | 2364029..2364189 | 508..668 | 100 | <- | Minus |
arm_3R | 2368293..2368363 | 437..507 | 100 | <- | Minus |
arm_3R | 2357391..2357505 | 984..1098 | 100 | <- | Minus |
arm_3R | 2358358..2358566 | 669..877 | 100 | <- | Minus |
arm_3R | 2371397..2371695 | 138..436 | 100 | <- | Minus |
arm_3R | 2391857..2391977 | 17..137 | 100 | | Minus |
BS10279.pep Sequence
Translation from 16 to 1098
> BS10279.pep
MRSWKNRSRSEMQTLETRVRPLQGAQLTQLLLGGILCLTIASHTQTSAEA
AGGRVSGPGAGTSEGAGTSSASAASTAISSDESGDPSSATAFSSLAQVSS
LLPEASALSATSGLVEPYLDGYATSNVTTQIGTHAYLPCRVKQLGNKSVS
WIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYEC
QVSTEPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPP
TFIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRD
TGNYTCSPSNSPSATVTLNIINGESSASAVTSSAATTRAYALSILALLLS
VILIGVGHRT*
BS10279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-PC | 360 | CG33202-PC | 1..360 | 1..360 | 1802 | 100 | Plus |
dpr11-PB | 360 | CG33202-PB | 1..360 | 1..360 | 1802 | 100 | Plus |
dpr17-PE | 508 | CG31361-PE | 258..488 | 126..348 | 626 | 52.4 | Plus |
dpr17-PC | 508 | CG31361-PC | 258..488 | 126..348 | 626 | 52.4 | Plus |
dpr17-PB | 508 | CG31361-PB | 258..488 | 126..348 | 626 | 52.4 | Plus |