Clone BS10279 Report

Search the DGRC for BS10279

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptdpr11-RB
Protein status:BS10279.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10279.3prime Sequence

938 bp (844 high quality bases) assembled on 2006-04-19

> BS10279.3prime
ATGGTCTAGAAAGCTTTCATGTGCGGTGGCCCACTCCGATGAGGATGACG
CTAAGCAGGAGCGCCAGGATGCTGAGGGCGTAGGCCCGGGTGGTGGCTGC
CGAGGATGTTACCGCCGAGGCCGACGATTCGCCATTTATTATGTTCAGCG
TTACGGTCGCACTGGGGCTATTCGACGGGCTACATGTGTAATTGCCTGTA
TCGCGCTTCTTGGCCGACTCGATGATTAATGAGCCAATCGTGCTCTGTCC
TTCGCCGGAGGCCTCCGGCAGGTTGGGATCCAGTTGCGTGCGGTGGCGCC
GGGAGTCGGCCGCCAGCTGCTCGGCGCCGTGGTACCACATGATGAACGTG
GGCGGCTCCAAGGCTCCGCGCACGATACAGCGGAGCACCACGTTGCTGCC
CGCCTTCACGTAGCGGTCCGGCTCTCCTAGGATCTCCGTGCGAGGAACCA
CAACTTGCAGCTGGACACGGGCGCTGACTTTGGGCTCCGTAGAGACCTGG
CACTCGTAGGAGCCGGCGTCCCGGGCCTGGACGTACTTAATCTGCAGGGT
CCAGTACTTGTCCGGCTGCTTGATGGCCAGGAATCGCTGGTCGGCTATGA
AGACGGCCCTGTCAACGGTCAAGATGTGCCCATCTCGCAGACGAATCCAG
GACACAGATTTGTTGCCCAGCTGTTTGACCCGACAGGGCAGATACGCGTG
TGTCCCGATCTGAGTGGTCACATTGGAAGTGGCGTAGCCATCCAGATAGG
GCTCCACGAGTCCCGATGTCGCCGACAGAGCGGATGCCTCCGGCAGAAGC
GAGGACACTTGAGCCAAACTGGAGAACGCGGTCGCCGATGATGGGTCGCC
GCTCTCATCGGAGCTGATGGCCGGGGAGGCTGCCGATGCCGATGANGTTC
CTGCTCCTTCTGATGTTCCTGCTCCGGGTCCAGATACC

BS10279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33202-PB 1083 dpr11-RB 162..1083 938..17 4566 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1231..2152 938..17 4584 99.8 Minus
dpr11-RB 3519 CG33202-RB 1231..2152 938..17 4584 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545933 678..938 1279 99.2 Plus
3R 32079331 3R 6532636..6532845 239..448 1050 100 Plus
3R 32079331 3R 6538307..6538470 448..611 820 100 Plus
3R 32079331 3R 6531668..6531784 17..133 585 100 Plus
3R 32079331 3R 6531945..6532052 132..239 540 100 Plus
3R 32079331 3R 6542570..6542642 608..680 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:57:54 has no hits.

BS10279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:06 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-PB 162..1083 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:15 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33202-PB 162..1083 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:46 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1231..2158 9..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:53 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1231..2158 9..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:53 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6545675..6545933 680..938 99   Plus
3R 6531662..6531783 9..132 96 <- Plus
3R 6531946..6532051 133..238 100 <- Plus
3R 6532636..6532844 239..447 100 <- Plus
3R 6538307..6538467 448..608 100 <- Plus
3R 6542571..6542641 609..679 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:46 Download gff for BS10279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2357384..2357505 9..132 96 <- Plus
arm_3R 2357668..2357773 133..238 100 <- Plus
arm_3R 2358358..2358566 239..447 100 <- Plus
arm_3R 2364029..2364189 448..608 100 <- Plus
arm_3R 2368293..2368363 609..679 100 <- Plus
arm_3R 2371397..2371655 680..938 99   Plus

BS10279.5prime Sequence

838 bp (837 high quality bases) assembled on 2006-04-19

> BS10279.5prime
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGAT

BS10279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33202-PB 1083 dpr11-RB 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1070..1891 17..838 4110 100 Plus
dpr11-RB 3519 CG33202-RB 1070..1891 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545974 438..137 1510 100 Minus
3R 32079331 3R 6532675..6532845 838..668 855 100 Minus
3R 32079331 3R 6538307..6538470 668..505 820 100 Minus
3R 32079331 3R 6566135..6566255 137..17 605 100 Minus
3R 32079331 3R 6542570..6542642 508..436 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:36:56 has no hits.

BS10279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:07 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-PB 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:16 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33202-PB 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:43 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..1891 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:13 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..1891 10..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:13 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6532675..6532844 669..838 100 <- Minus
3R 6538307..6538467 508..668 100 <- Minus
3R 6542571..6542641 437..507 100 <- Minus
3R 6545675..6545973 138..436 100 <- Minus
3R 6566135..6566260 10..137 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:43 Download gff for BS10279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2358397..2358566 669..838 100 <- Minus
arm_3R 2364029..2364189 508..668 100 <- Minus
arm_3R 2368293..2368363 437..507 100 <- Minus
arm_3R 2371397..2371695 138..436 100 <- Minus
arm_3R 2391857..2391982 10..137 96   Minus

BS10279.complete Sequence

1115 bp (1115 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636625

> BS10279.complete
GAAGTTATCAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAA
TGCAAACACTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACT
CAGCTGCTCCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACA
GACGTCGGCGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAA
CATCAGAAGGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATC
AGCTCCGATGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTT
GGCTCAAGTGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACAT
CGGGACTCGTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACC
ACTCAGATCGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGG
CAACAAATCTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCG
TTGACAGGGCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAG
CCGGACAAGTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGC
CGGCTCCTACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTG
TCCAGCTGCAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGAC
CGCTACGTGAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGG
AGCCTTGGAGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGC
TGGCGGCCGACTCCCGGCGCCACCGCACGCAACTGGATCCCAACCTGCCG
GAGGCCTCCGGCGAAGGACAGAGCACGATTGGCTCATTAATCATCGAGTC
GGCCAAGAAGCGCGATACAGGCAATTACACATGTAGCCCGTCGAATAGCC
CCAGTGCGACCGTAACGCTGAACATAATAAATGGCGAATCGTCGGCCTCG
GCGGTAACATCCTCGGCAGCCACCACCCGGGCCTACGCCCTCAGCATCCT
GGCGCTCCTGCTTAGCGTCATCCTCATCGGAGTGGGCCACCGCACATGAA
AGCTTTCTAGACCAT

BS10279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 1083 CG33202-PC 1..1083 17..1099 5415 100 Plus
dpr11-RB 1083 CG33202-PB 1..1083 17..1099 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1070..2152 17..1099 5415 100 Plus
dpr11-RB 3519 CG33202-RB 1070..2152 17..1099 5415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545974 438..137 1510 100 Minus
3R 32079331 3R 6532636..6532845 877..668 1050 100 Minus
3R 32079331 3R 6538307..6538470 668..505 820 100 Minus
3R 32079331 3R 6566135..6566255 137..17 605 100 Minus
3R 32079331 3R 6531668..6531784 1099..983 585 100 Minus
3R 32079331 3R 6531945..6532052 984..877 540 100 Minus
3R 32079331 3R 6542570..6542642 508..436 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:55:25 has no hits.

BS10279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:16 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1..1083 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:45 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2151 17..1098 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:49 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2151 17..1098 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:16 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..2158 10..1107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:59 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1070..2151 17..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:59 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6566135..6566255 17..137 100   Minus
3R 6531946..6532051 878..983 100 <- Minus
3R 6532636..6532844 669..877 100 <- Minus
3R 6538307..6538467 508..668 100 <- Minus
3R 6542571..6542641 437..507 100 <- Minus
3R 6545675..6545973 138..436 100 <- Minus
3R 6531669..6531783 984..1098 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:49 Download gff for BS10279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2357668..2357773 878..983 100 <- Minus
arm_3R 2364029..2364189 508..668 100 <- Minus
arm_3R 2368293..2368363 437..507 100 <- Minus
arm_3R 2357391..2357505 984..1098 100 <- Minus
arm_3R 2358358..2358566 669..877 100 <- Minus
arm_3R 2371397..2371695 138..436 100 <- Minus
arm_3R 2391857..2391977 17..137 100   Minus

BS10279.pep Sequence

Translation from 16 to 1098

> BS10279.pep
MRSWKNRSRSEMQTLETRVRPLQGAQLTQLLLGGILCLTIASHTQTSAEA
AGGRVSGPGAGTSEGAGTSSASAASTAISSDESGDPSSATAFSSLAQVSS
LLPEASALSATSGLVEPYLDGYATSNVTTQIGTHAYLPCRVKQLGNKSVS
WIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYEC
QVSTEPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPP
TFIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRD
TGNYTCSPSNSPSATVTLNIINGESSASAVTSSAATTRAYALSILALLLS
VILIGVGHRT*

BS10279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-PC 360 CG33202-PC 1..360 1..360 1802 100 Plus
dpr11-PB 360 CG33202-PB 1..360 1..360 1802 100 Plus
dpr17-PE 508 CG31361-PE 258..488 126..348 626 52.4 Plus
dpr17-PC 508 CG31361-PC 258..488 126..348 626 52.4 Plus
dpr17-PB 508 CG31361-PB 258..488 126..348 626 52.4 Plus