Clone Sequence Records
BS10280.3prime Sequence
932 bp (818 high quality bases) assembled on 2006-04-19
> BS10280.3prime
ATGGTCTAGAAAGCTTTTACAAGTCATCCGAGCCCGACATGATCTCCTCG
AACAGTGAATGGGCATTGTCAGTGGCCGATGATCTGTCGCCAGCGGCAGA
ATTGCTCCTGGATCCGCCACTGACAAGCTCATCCACCGTGTCGAGGGCCG
AGAAGTTGGCCCTTCCTCGGCGTGTTCGACTGGTCCTGAATTTCTTGGCC
GGTGGCTCGATGACTTCCCTGTCAGGAGCAGGAGGCGGTGGTGGCGAAAG
TGATGGAGCTGGTGGATTCGGCGGGTCAATTGTTGGCATTATATAAGCAT
ACTGGGGAAGGGAACCGAAGCCATCGGTGTGCTGCAGCTGGACACGAATA
GTGAAGCCAACGGTGACCGGATCAAGGGGCTTGCTGCCCTGGAAGATATT
GAAGCCCTGGTACTCGCCTTTCTCATTCTGAACAAGCACCAAAGGATGCT
GGGATTGCTGCAAATTATTTAGCGGCACTAGGCTTATGGGGGCAGAAGAG
TCTGGCGGCGCCATACTGTTCTCCTCCTGCCTAGGCTCAGCTACCACCGG
CTCCTCCGACTGAGTCATCGGCTCTGGAACGTCCTTCGGCATTTCGAAAT
CCTCCAAATCATCGTCCTCATCACTTTCAACGTAGTCCTCCTTGTGCGGA
TTCTTGCAGCACACGCAATGACACCCGGCACAGCTGTTGTAACTCTTGTA
GCAAGGACATCGGGAATTCCGGCAGGTGGTGAGGGTATTGCTCGAGCCGG
AGATACCGCAGCGGCACTTCGGCTTCGGAGGCTTCACCTTTTCCTCCTTG
TCCTTGCCCCGAATCCTGCGAAGAGCGCCCTTTTCAGATTGCACTTTAGT
CTTGACCTCAGACGGTACAGGCTCAATTTTGGCAGCTTGTGACGCTTTGA
GAGTACGGGTTCTCTTTCGCTTAAGTGTTGGC
BS10280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3241-PB | 2322 | msl-2-RB | 1407..2322 | 932..17 | 4555 | 99.8 | Minus |
| CG3241-PA | 2322 | msl-2-RA | 1407..2322 | 932..17 | 4555 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 1880..2795 | 932..17 | 4565 | 99.9 | Minus |
| msl-2-RB | 3710 | CG3241-RB | 1747..2662 | 932..17 | 4565 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3463706..3464233 | 405..932 | 2625 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3463266..3463655 | 17..406 | 1950 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:38:05 has no hits.
BS10280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:08 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-PB | 1407..2322 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:18 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3241-PA | 1407..2322 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:11 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 1747..2664 | 13..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:54 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 1747..2664 | 13..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:54 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3463264..3463654 | 13..405 | 99 | <- | Plus |
| 2L | 3463707..3464233 | 406..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:11 Download gff for
BS10280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3463264..3463654 | 13..405 | 99 | <- | Plus |
| arm_2L | 3463707..3464233 | 406..932 | 99 | | Plus |
BS10280.5prime Sequence
882 bp (756 high quality bases) assembled on 2006-04-19
> BS10280.5prime
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACA
BS10280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3241-PB | 2322 | msl-2-RB | 1..866 | 17..882 | 4330 | 100 | Plus |
| CG3241-PA | 2322 | msl-2-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 473..1339 | 16..882 | 4335 | 100 | Plus |
| msl-2-RB | 3710 | CG3241-RB | 340..1206 | 16..882 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3464774..3465640 | 882..16 | 4335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:24:38 has no hits.
BS10280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:09 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:19 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3241-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:52 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 331..1205 | 6..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:07:29 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 331..1205 | 6..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:07:29 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3464775..3465644 | 13..881 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:52 Download gff for
BS10280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3464775..3465644 | 13..881 | 99 | <- | Minus |
BS10280.complete Sequence
2354 bp assembled on 2007-11-30
GenBank Submission: FJ636626
> BS10280.complete
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGCCA
GGTGGTGCAAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTG
AGGAGACCGTCGAGACGTCCACACAGTTGACTGTGCTCTCCACCACCGTT
GAAGAGACCGTTGAAACATCCACGCAGCTAGAAGTGCTTACCTCCGCTGA
GGAACCCAACGAAATCTCTGATCAATTGGCTAATCTGCAAGTTGAGGAAT
CTGATGAGGCTCTGGTTGAAGAGACCGTTGAAGAGGCCGAAGGGACCTCA
ATCCCGTCAGAGGTTGTAGCTGAGCACATGGAGGAGGATCAACACTTGGA
TGTGCACACTTCACAGTCACCTACACAAACCGAAATGGAGGAAGCAGTGG
AGGAGCATGTTGCCACAAAAACACAATTGGGTCATGTGCAAACAGAATTG
CAGGATGCGGAGTCGTTGCAGAAAGATTTTGAGGACGCAAAGGCAGCGGC
TGAAGAGGCGAAGGAGAAGGAGAAGGACCTGCACGCAATCAGTGCTGAGC
TGCAGAAGGAGGACAGTGACGAGCCAACACTTAAGCGAAAGAGAACCCGT
ACTCTCAAAGCGTCACAAGCTGCCAAAATTGAGCCTGTACCGTCTGAGGT
CAAGACTAAAGTGCAATCTGGAAAGGGCGCTCTTCGCAGGATTCGGGGCA
AGGACAAGGAGGAAAAGGTGAAGCCTCCGAAGCCGAAGTGCCGCTGCGGT
ATCTCCGGCTCGAGCAATACCCTCACCACCTGCCGGAATTCCCGATGTCC
TTGCTACAAGAGTTACAACAGCTGTGCCGGGTGTCATTGCGTGTGCTGCA
AGAATCCGCACAAGGAGGACTACGTTGAAAGTGATGAGGACGATGATTTG
GAGGATTTCGAAATGCCGAAGGACGTTCCAGAGCCGATGACTCAGTCGGA
GGAGCCGGTGGTAGCTGAGCCTAGGCAGGAGGAGAACAGTATGGCGCCGC
CAGACTCTTCTGCCCCCATAAGCCTAGTGCCGCTAAATAATTTGCAGCAA
TCCCAGCATCCTTTGGTGCTTGTTCAGAATGAGAAAGGCGAGTACCAGGG
CTTCAATATCTTCCAGGGCAGCAAGCCCCTTGATCCGGTCACCGTTGGCT
TCACTATTCGTGTCCAGCTGCAGCACACCGATGGCTTCGGTTCCCTTCCC
CAGTATGCTTATATAATGCCAACAATTGACCCGCCGAATCCACCAGCTCC
ATCACTTTCGCCACCACCGCCTCCTGCTCCTGACAGGGAAGTCATCGAGC
CACCGGCCAAGAAATTCAGGACCAGTCGAACACGCCGAGGAAGGGCCAAC
TTCTCGGCCCTCGACACGGTGGATGAGCTTGTCAGTGGCGGATCCAGGAG
CAATTCTGCCGCTGGCGACAGATCATCGGCCACTGACAATGCCCATTCAC
TGTTCGAGGAGATCATGTCGGGCTCGGATGACTTGTAAAAGCTTTCTAGA
CCAT
BS10280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 2322 | CG3241-PA | 1..2322 | 17..2338 | 11610 | 100 | Plus |
| msl-2-RB | 2322 | CG3241-PB | 1..2322 | 17..2338 | 11610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 473..2795 | 16..2338 | 11615 | 100 | Plus |
| msl-2-RB | 3710 | CG3241-RB | 340..2662 | 16..2338 | 11615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3463706..3465640 | 1950..16 | 9675 | 100 | Minus |
| 2L | 23513712 | 2L | 3463266..3463655 | 2338..1949 | 1950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:41:31 has no hits.
BS10280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:45 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RA | 1..2322 | 17..2338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:05 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RA | 463..2796 | 6..2342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:46 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 341..2660 | 17..2336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:58 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RA | 473..2792 | 17..2336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:03 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 341..2660 | 17..2336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:03 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3463268..3463654 | 1950..2336 | 100 | <- | Minus |
| 2L | 3463707..3465639 | 17..1949 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:46 Download gff for
BS10280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3463268..3463654 | 1950..2336 | 100 | <- | Minus |
| arm_2L | 3463707..3465639 | 17..1949 | 100 | | Minus |
BS10280.pep Sequence
Translation from 16 to 2337
> BS10280.pep
MAQTAYLKVTRIAMRSASNLSKRRVEELNSGLGELRQLLSCVVCCQLLVD
PYSPKGKRCQHNVCRLCLRGKKHLFPSCTQCEGCSDFKTYEENRMMAAQL
LCYKTLCVHLLHSALFGELAGMRPQVARELVPRIKLPPKTTQEFIREGSN
ISDTFDIFLPQPDLPFLKDMPTSLPAETPPTSAVTTPELPYDHHLNISDI
EAEAAATAEQGHFSPLPLLPTGSRMGMLSHAGQIVIATESSESGFMDQAW
TDQVDLSGTVSVSKYTNSGNNFAVSYVMPTSATTKFDPQELQIGQVVQMA
DSTQLAVLAAVEETVETSTQLTVLSTTVEETVETSTQLEVLTSAEEPNEI
SDQLANLQVEESDEALVEETVEEAEGTSIPSEVVAEHMEEDQHLDVHTSQ
SPTQTEMEEAVEEHVATKTQLGHVQTELQDAESLQKDFEDAKAAAEEAKE
KEKDLHAISAELQKEDSDEPTLKRKRTRTLKASQAAKIEPVPSEVKTKVQ
SGKGALRRIRGKDKEEKVKPPKPKCRCGISGSSNTLTTCRNSRCPCYKSY
NSCAGCHCVCCKNPHKEDYVESDEDDDLEDFEMPKDVPEPMTQSEEPVVA
EPRQEENSMAPPDSSAPISLVPLNNLQQSQHPLVLVQNEKGEYQGFNIFQ
GSKPLDPVTVGFTIRVQLQHTDGFGSLPQYAYIMPTIDPPNPPAPSLSPP
PPPAPDREVIEPPAKKFRTSRTRRGRANFSALDTVDELVSGGSRSNSAAG
DRSSATDNAHSLFEEIMSGSDDL*
BS10280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-PA | 773 | CG3241-PA | 1..773 | 1..773 | 4007 | 100 | Plus |
| msl-2-PB | 773 | CG3241-PB | 1..773 | 1..773 | 4007 | 100 | Plus |
