Clone BS10281 Report

Search the DGRC for BS10281

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-Ic-RA
Protein status:BS10281.pep: full length peptide match
Sequenced Size:1637

Clone Sequence Records

BS10281.3prime Sequence

890 bp (787 high quality bases) assembled on 2006-04-19

> BS10281.3prime
ATGGTCTAGAAAGCTTTCAGCACGCGCTCCAACGCGACTGCATCATCGCA
TCCATCGCCTGCGATTTCTTTTGCCGCCTTTCTCGCCGCCGAGTCATCAA
TAATCGTTGATCCGGCCCACTGGCCACGCCCCTTACAGCATTGACGCCCC
CCACAAGTGTCGCTGACAGCCGCTTAATGCTGCAACTCGCAACTCCTCCT
GCAGCAGCAACATCTGCAGCATCAGCATCGGCAGTTGCTGTCGCTGTTGC
CGTTGCATTTGCACTCGTGCTGCCAATATACGCATCACCACCGTCATCAT
CATCATCACGACTTCGAGTTGGCATCGCCATAGCCATTTGACAATTATAA
AAGCATTTGACGCTAGATGCGCTAGATGTTGCCGCTTTTGAAGCTGTCAC
CTCGATGTTGCTGCTGCTGCCGCTGTTGCGTTGTTGCTGTTGCACCTTGC
CAGTCGCCGGCTTAGTGTATTGACAGTTGATAATTTGATGGCCCAGCGGC
CCTTGCTGCAGCAGGAAAAAAAGGAGAAGAGCAGCCGCTCCACCGCCCCC
ACATAGCCAGTGCCACGCCCCCGCCAACTGCCTGTTGATGGGGAGCTTTG
TGAGCTGCGATGGCCAGAACTGCCAGAAGATTTCGTGTGCAGCTGTCGAG
GCGCCCGATGCCGTGTTATCCGCGGAGTAGTACGTCAAATAGGACTCGTT
GTGATCCTCANAGCCGCCTCGTTCGCCATTCGTGTGCTCCTCGAGGGGAT
AATTGTTGATGTCATACGATCTGCCGGAAGCCATTATCCTGGGCCGGTCC
TCCTCGATGACACTCTCCATTTCCTCCTTGAAGATGTCAAAGATATTGGC
CGTGCACTTGAGCCTCATCTGGCCCTTGAGGAAATGTTGA

BS10281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4838-PA 1605 beat-Ic-RA 732..1605 890..17 4351 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 1649..2522 890..17 4359 99.9 Minus
beat-Ic-RB 4924 CG4838-RB 1878..2751 890..17 4359 99.9 Minus
beat-Ic-RA 3399 CG4838-RA 1649..2522 890..17 4359 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16038874..16039530 673..17 3285 100 Minus
2L 23513712 2L 16037336..16037526 863..673 944 99.5 Minus
Blast to na_te.dros performed 2015-02-10 15:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6900 135..305 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6904 443..364 143 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2431 182..308 137 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2386 180..233 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3275..3357 178..262 131 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6912 199..355 121 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6866 201..235 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1548..1587 190..229 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1115..1146 202..233 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6838..6883 189..234 113 71.7 Plus
roo 9092 roo DM_ROO 9092bp 1127..1164 202..239 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6885 199..308 108 57.7 Plus

BS10281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:10 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 733..1605 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:21 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 733..1605 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 15:00:02 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 1650..2525 13..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:33 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 1650..2525 13..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:33 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16037237..16037263 863..889 100 -> Minus
2L 16037337..16037526 673..862 99 -> Minus
2L 16038875..16039525 22..672 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:02 Download gff for BS10281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16037237..16037263 863..889 100 -> Minus
arm_2L 16037337..16037526 673..862 99 -> Minus
arm_2L 16038875..16039525 22..672 100 -> Minus

BS10281.5prime Sequence

805 bp (804 high quality bases) assembled on 2006-04-19

> BS10281.5prime
GAAGTTATCAGTCGACATGGCGAAGACGACTATTCCGGGGGCAAGCACCC
GTCACATGCAAATGGCCAATCGGTGGAGGACGGAAAAGGACGTTGGATCC
CATGGTTCCCAAAGTGGGCGTAGCTGCATCTGCTGGATATCCGTGGTACT
CCTACTCATTCTGGTGCCTGATTTTATTGAAGCACTCAAGGATGTGTCGG
TAATGATACCGCAGGCGGTGAAACGTGGCAGCAATGCGCTATTCACTTGT
AATTACGATATGGAAAACGATACTCTATATTCGGTTAAATGGTATAAGGG
CAAGCGTGAGTTTTATCGCTATACGCCCAAGGAGAATCCGGCGATGAAGG
TCTTTGCCATGACAAGTGGTCTCAATGTCGAGCGCAACCTTTCGAATCAG
AGCCACGTCGTCCTGCAGTCGGTGCCGCTGAATATTTCGGGGAAATTTAC
ATGCGAAATATCGGTGGAGGCGCCCACTTTTCAAACGGCCATGGTGTCCG
GCGAAATGGAGGTGGTTGAGCTGCCGGAAGAGCACACTGTGGTTACCGGG
ATACAGGCACGTTATCGCATCGGCGATTTGGTCGACGGCAATTGCTCAAT
TAAATACTCGAAACCGGCTGCTAATTTGACATGGACTATTAATGGTATTG
TGGTGCCACCGCATCACATAAAGACCTACCAGACGGAGAAGCGGGAGAAC
AGCACCCTGGAATCGGTTACAAGTGCCATACATTTCATGGTCACCAATCA
ACATTTCCTCAAGGGCCAGATGAGGCTCAAGTGCACGGCCAATATCTTTG
ACATC

BS10281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4838-PA 1605 beat-Ic-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 918..1706 17..805 3945 100 Plus
beat-Ic-RB 4924 CG4838-RB 1147..1935 17..805 3945 100 Plus
beat-Ic-RA 3399 CG4838-RA 918..1706 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16032379..16032591 170..382 1065 100 Plus
2L 23513712 2L 16014135..16014288 17..170 770 100 Plus
2L 23513712 2L 16034186..16034323 381..518 690 100 Plus
2L 23513712 2L 16034579..16034715 518..654 685 100 Plus
2L 23513712 2L 16037140..16037263 652..775 620 100 Plus
2L 23513712 2L 15908107..15908216 342..233 190 78.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:07:38 has no hits.

BS10281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:11 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:23 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:45 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 915..1706 12..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:44 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 915..1706 12..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:44 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16014132..16014288 12..170 98 -> Plus
2L 16032380..16032591 171..382 100 -> Plus
2L 16034188..16034323 383..518 100 -> Plus
2L 16034580..16034713 519..652 100 -> Plus
2L 16037141..16037263 653..775 100 -> Plus
2L 16037337..16037366 776..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:45 Download gff for BS10281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16032380..16032591 171..382 100 -> Plus
arm_2L 16014132..16014288 12..170 98 -> Plus
arm_2L 16034188..16034323 383..518 100 -> Plus
arm_2L 16034580..16034713 519..652 100 -> Plus
arm_2L 16037141..16037263 653..775 100 -> Plus
arm_2L 16037337..16037366 776..805 100   Plus

BS10281.complete Sequence

1637 bp assembled on 2009-02-12

> BS10281.complete
GAAGTTATCAGTCGACATGGCGAAGACGACTATTCCGGGGGCAAGCACCC
GTCACATGCAAATGGCCAATCGGTGGAGGACGGAAAAGGACGTTGGATCC
CATGGTTCCCAAAGTGGGCGTAGCTGCATCTGCTGGATATCCGTGGTACT
CCTACTCATTCTGGTGCCTGATTTTATTGAAGCACTCAAGGATGTGTCGG
TAATGATACCGCAGGCGGTGAAACGTGGCAGCAATGCGCTATTCACTTGT
AATTACGATATGGAAAACGATACTCTATATTCGGTTAAATGGTATAAGGG
CAAGCGTGAGTTTTATCGCTATACGCCCAAGGAGAATCCGGCGATGAAGG
TCTTTGCCATGACAAGTGGTCTCAATGTCGAGCGCAACCTTTCGAATCAG
AGCCACGTCGTCCTGCAGTCGGTGCCGCTGAATATTTCGGGGAAATTTAC
ATGCGAAATATCGGTGGAGGCGCCCACTTTTCAAACGGCCATGGTGTCCG
GCGAAATGGAGGTGGTTGAGCTGCCGGAAGAGCACACTGTGGTTACCGGG
ATACAGGCACGTTATCGCATCGGCGATTTGGTCGACGGCAATTGCTCAAT
TAAATACTCGAAACCGGCTGCTAATTTGACATGGACTATTAATGGTATTG
TGGTGCCACCGCATCACATAAAGACCTACCAGACGGAGAAGCGGGAGAAC
AGCACCCTGGAATCGGTTACAAGTGCCATACATTTCATGGTCACCAATCA
ACATTTCCTCAAGGGCCAGATGAGGCTCAAGTGCACGGCCAATATCTTTG
ACATCTTCAAGGAGGAAATGGAGAGTGTCATCGAGGAGGACCGGCCCAGG
ATAATGGCTTCCGGCAGATCGTATGACATCAACAATTATCCCCTCGAGGA
GCACACGAATGGCGAACGAGGCGGCTTTGAGGATCACAACGAGTCCTATT
TGACGTACTACTCCGCGGATAACACGGCATCGGGCGCCTCGACAGCTGCA
CACGAAATCTTCTGGCAGTTCTGGCCATCGCAGCTCACAAAGCTCCCCAT
CAACAGGCAGTTGGCGGGGGCGTGGCACTGGCTATGTGGGGGCGGTGGAG
CGGCTGCTCTTCTCCTTTTTTTCCTGCTGCAGCAAGGGCCGCTGGGCCAT
CAAATTATCAACTGTCAATACACTAAGCCGGCGACTGGCAAGGTGCAACA
GCAACAACGCAACAGCGGCAGCAGCAGCAACATCGAGGTGACAGCTTCAA
AAGCGGCAACATCTAGCGCATCTAGCGTCAAATGCTTTTATAATTGTCAA
ATGGCTATGGCGATGCCAACTCGAAGTCGTGATGATGATGATGACGGTGG
TGATGCGTATATTGGCAGCACGAGTGCAAATGCAACGGCAACAGCGACAG
CAACTGCCGATGCTGATGCTGCAGATGTTGCTGCTGCAGGAGGAGTTGCG
AGTTGCAGCATTAAGCGGCTGTCAGCGACACTTGTGGGGGGCGTCAATGC
TGTAAGGGGCGTGGCCAGTGGGCCGGATCAACGATTATTGATGACTCGGC
GGCGAGAAAGGCGGCAAAAGAAATCGCAGGCGATGGATGCGATGATGCAG
TCGCGTTGGAGCGCGTGCTGAAAGCTTTCTAGACCAT

BS10281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 1605 CG4838-PC 1..1605 17..1621 8025 100 Plus
beat-Ic-RB 1605 CG4838-PB 1..1605 17..1621 8025 100 Plus
beat-Ic-RA 1605 CG4838-PA 1..1605 17..1621 8025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 918..2522 17..1621 8025 100 Plus
beat-Ic-RB 4924 CG4838-RB 1147..2751 17..1621 8025 100 Plus
beat-Ic-RA 3399 CG4838-RA 918..2522 17..1621 8025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16038874..16039530 965..1621 3285 100 Plus
2L 23513712 2L 16032379..16032591 170..382 1065 100 Plus
2L 23513712 2L 16037336..16037526 775..965 955 100 Plus
2L 23513712 2L 16014135..16014288 17..170 770 100 Plus
2L 23513712 2L 16034186..16034323 381..518 690 100 Plus
2L 23513712 2L 16034579..16034715 518..654 685 100 Plus
2L 23513712 2L 16037140..16037263 652..775 620 100 Plus
2L 23513712 2L 15908107..15908216 342..233 190 78.2 Minus
Blast to na_te.dros performed 2014-11-28 00:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6900 1503..1333 145 57.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2431 1456..1330 137 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2386 1458..1405 132 74.1 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3275..3357 1460..1376 131 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6866 1437..1403 121 82.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1548..1587 1448..1409 119 77.5 Minus
roo 9092 roo DM_ROO 9092bp 1115..1146 1436..1405 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6838..6883 1449..1404 113 71.7 Minus

BS10281.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:43 Download gff for BS10281.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 901..2504 17..1620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:58 Download gff for BS10281.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 918..2521 17..1620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:50 Download gff for BS10281.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 918..2521 17..1620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:50 Download gff for BS10281.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16037337..16037526 776..965 100 -> Plus
2L 16034580..16034713 519..652 100 -> Plus
2L 16037141..16037263 653..775 100 -> Plus
2L 16014135..16014288 17..170 100 -> Plus
2L 16032380..16032591 171..382 100 -> Plus
2L 16034188..16034323 383..518 100 -> Plus
2L 16038875..16039529 966..1620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:58 Download gff for BS10281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16014135..16014288 17..170 100 -> Plus
arm_2L 16032380..16032591 171..382 100 -> Plus
arm_2L 16034188..16034323 383..518 100 -> Plus
arm_2L 16034580..16034713 519..652 100 -> Plus
arm_2L 16037141..16037263 653..775 100 -> Plus
arm_2L 16037337..16037526 776..965 100 -> Plus
arm_2L 16038875..16039529 966..1620 100   Plus

BS10281.pep Sequence

Translation from 16 to 1620

> BS10281.pep
MAKTTIPGASTRHMQMANRWRTEKDVGSHGSQSGRSCICWISVVLLLILV
PDFIEALKDVSVMIPQAVKRGSNALFTCNYDMENDTLYSVKWYKGKREFY
RYTPKENPAMKVFAMTSGLNVERNLSNQSHVVLQSVPLNISGKFTCEISV
EAPTFQTAMVSGEMEVVELPEEHTVVTGIQARYRIGDLVDGNCSIKYSKP
AANLTWTINGIVVPPHHIKTYQTEKRENSTLESVTSAIHFMVTNQHFLKG
QMRLKCTANIFDIFKEEMESVIEEDRPRIMASGRSYDINNYPLEEHTNGE
RGGFEDHNESYLTYYSADNTASGASTAAHEIFWQFWPSQLTKLPINRQLA
GAWHWLCGGGGAAALLLFFLLQQGPLGHQIINCQYTKPATGKVQQQQRNS
GSSSNIEVTASKAATSSASSVKCFYNCQMAMAMPTRSRDDDDDGGDAYIG
STSANATATATATADADAADVAAAGGVASCSIKRLSATLVGGVNAVRGVA
SGPDQRLLMTRRRERRQKKSQAMDAMMQSRWSAC*

BS10281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-PC 534 CG4838-PC 1..534 1..534 2789 100 Plus
beat-Ic-PB 534 CG4838-PB 1..534 1..534 2789 100 Plus
beat-Ic-PA 534 CG4838-PA 1..534 1..534 2789 100 Plus
beat-Ib-PB 327 CG7644-PB 12..302 40..338 820 51.2 Plus
beat-Ib-PA 327 CG7644-PA 12..302 40..338 820 51.2 Plus