Clone Sequence Records
BS10283.3prime Sequence
928 bp (795 high quality bases) assembled on 2006-04-19
> BS10283.3prime
ATGGTCTAGAAAGCTTCTAGCGAAACCACTCCTGGGACATCCCAAAGAAG
GAAGCTGCGCTCGATTTGGATTTGCTGCTGTCTCCCTTGCGGGCTCCATT
GCCACCCGACTTCCTCGTCGGCGTCGTTGTCGCCGTTTTCTCAACTGGCT
CTTGGATCGGAGATTTCCGCTCTGCGCTAGTAACTCTTCCGGCAGCTTGG
GGCATCACAATGGGCAGCAGCGGGAACCACAGCGACGTGGATCCGGAAGA
ACTGAGACACAGCACATTGGGATCTGCTTCATGGGCCAAAGAACTGGCAG
CAGCTGCACCCTGACTGGGAGCAGCTGCCGAGGGAGTAAGCACTCCCAGT
TCACCCTGCAGACGGCTTGCAGCTCGGGACACATGAGCGGTTATATGCTC
GGCAAACAGCTCGAAGTCAAAGGGATCTATGTAGTCGCGCAGTTGGTTCT
GCTGGGCGTGGATTTGGTCGTAGAGAGTCCTCTCCTCACGTGAAATGGCG
AACACGCGCTCCAGGAACTTAAGATCAAAGTATAGTTGCAGGGCAATATT
CTGACTGGCTTTGGTGCATTCCGCGTGGGCCAATCCCTCGTAGTGGCAGA
GCAGTTTCCCTATGAGCCGCTGAATGAATGCTTGCAATACCTTGGGTGGC
AGAGTTTGGGGAACAACCGAATTCAATGCCTGAATTAGCTGATGAAGATA
CGTCTGCAGAGAGAGTCGCGGCTGACTGGGGATTCGAATGGTTGACTGAA
CACTCTGCTCCTGGTCCTCGTCGCGCTGTTCCAGTGTCAAGGTCTGCCAA
AGCGCAAAGTCGCTGAGAACCACTTCATGATTAATGACCTTTGGCAGTTT
CTCTTCGCAATTGTGGCCGGCCCACACATCGTCAACGATGACCAGCCAAA
AGGATAGCATCTCCTTTTTCGATCAGGC
BS10283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-PA | 2661 | CG4848-RA | 1760..2661 | 918..17 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 1833..2744 | 928..16 | 4525 | 99.8 | Minus |
| CG4848-RA | 2919 | CG4848-RA | 1833..2744 | 928..16 | 4525 | 99.8 | Minus |
| CG4848-RB | 2973 | CG4848-RB | 1833..2623 | 928..137 | 3920 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12216881..12217547 | 137..803 | 3335 | 100 | Plus |
| 3R | 32079331 | 3R | 12215833..12215953 | 16..136 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 12217606..12217721 | 803..918 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:01:50 has no hits.
BS10283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:14 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-PA | 1751..2661 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:27 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-PA | 1751..2661 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:50:07 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 1833..2749 | 11..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:17 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 1833..2749 | 11..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:17 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12215828..12215953 | 11..136 | 98 | <- | Plus |
| 3R | 12216881..12217546 | 137..802 | 100 | <- | Plus |
| 3R | 12217606..12217730 | 803..928 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:50:07 Download gff for
BS10283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8041550..8041675 | 11..136 | 98 | <- | Plus |
| arm_3R | 8042603..8043268 | 137..802 | 100 | <- | Plus |
| arm_3R | 8043328..8043452 | 803..928 | 98 | | Plus |
BS10283.5prime Sequence
817 bp (816 high quality bases) assembled on 2006-04-19
> BS10283.5prime
GAAGTTATCAGTCGACATGACGGCCAATTTGTTAAACCTGAACGTGGACA
CGCTGTTTGAGCAGCACAGCGTGTCCGAGATAGACGAGGTGCACAAAAAG
ATCCAGTCGGTGGTGGAGAACAAGCGCGAGGAGTTGCGCACTCATGTCGG
GGAGCGGTACCGAGATCTTTTGCAGGCGGCTGACACCATTGCTGCGATGC
AAACGTCGGCCGGGACACTTATGGAGCAAGTGCGACACGTGCAGGCCAAT
TGCCGCAGTCTAAACGAGCAGCAGCTCCTGGGCTTCCAGTCAACTGCCAA
TGCAAGTGCTAAAGATGCCGCACTGAAGGAGAGGAACGCCGGAAAAAAGC
TGCAGACCTACTACGGCACCATGGCTCAGATTAAGTTGCTTACTGCCCTG
CCGGAACTAATCTGGACGCACTTGGACAACGATCGCTTCTATGCCGCTAC
TGAGTTGTTCATCTTCAGTCGCCACATCAGCACGGGCTTGCAACTGGACG
GCCAGAGTGCCCTGATGCAGAAACTACCGGTAGCGCGCAAGCAATGGGAA
ATCCTGCGTCCCTTTCACGTGACCATCAAACAAGCCATACTGACCGCACT
GGAGAGGGAGGAACTCCTACAAGAAATGACTGTGGACTGCCTGCAGAGCC
TTCTCTTGCTAGACAAAAGCGATTTGAGTACTGTGCTGAAATCCTTCTTG
AACCTGCGCTCCTCAGCCTTTCTGAACTGCCTGCAAAGCGGTCCATCGGA
GCCACGTCGCGTCAAGGATCGCATTTTGGCTAGCTTAAACGTGCTCAACA
GCACCGTGGAGCTTCTG
BS10283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-PA | 2661 | CG4848-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 83..883 | 17..817 | 4005 | 100 | Plus |
| CG4848-RB | 2973 | CG4848-RB | 83..883 | 17..817 | 4005 | 100 | Plus |
| CG4848-RA | 2919 | CG4848-RA | 83..883 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12218748..12219415 | 817..150 | 3340 | 100 | Minus |
| 3R | 32079331 | 3R | 12219470..12219604 | 151..17 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:54:32 has no hits.
BS10283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:16 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:29 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:04:18 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..883 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:36 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..883 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:36 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12218748..12219414 | 151..817 | 100 | <- | Minus |
| 3R | 12219471..12219604 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:04:18 Download gff for
BS10283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8044470..8045136 | 151..817 | 100 | <- | Minus |
| arm_3R | 8045193..8045326 | 17..150 | 100 | | Minus |
BS10283.complete Sequence
2693 bp assembled on 2007-11-30
GenBank Submission: FJ636628
> BS10283.complete
GAAGTTATCAGTCGACATGACGGCCAATTTGTTAAACCTGAACGTGGACA
CGCTGTTTGAGCAGCACAGCGTGTCCGAGATAGACGAGGTGCACAAAAAG
ATCCAGTCGGTGGTGGAGAACAAGCGCGAGGAGTTGCGCACTCATGTCGG
GGAGCGGTACCGAGATCTTTTGCAGGCGGCTGACACCATTGCTGCGATGC
AAACGTCGGCCGGGACACTTATGGAGCAAGTGCGACACGTGCAGGCCAAT
TGCCGCAGTCTAAACGAGCAGCAGCTCCTGGGCTTCCAGTCAACTGCCAA
TGCAAGTGCTAAAGATGCCGCACTGAAGGAGAGGAACGCCGGAAAAAAGC
TGCAGACCTACTACGGCACCATGGCTCAGATTAAGTTGCTTACTGCCCTG
CCGGAACTAATCTGGACGCACTTGGACAACGATCGCTTCTATGCCGCTAC
TGAGTTGTTCATCTTCAGTCGCCACATCAGCACGGGCTTGCAACTGGACG
GCCAGAGTGCCCTGATGCAGAAACTACCGGTAGCGCGCAAGCAATGGGAA
ATCCTGCGTCCCTTTCACGTGACCATCAAACAAGCCATACTGACCGCACT
GGAGAGGGAGGAACTCCTACAAGAAATGACTGTGGACTGCCTGCAGAGCC
TTCTCTTGCTAGACAAAAGCGATTTGAGTACTGTGCTGAAATCCTTCTTG
AACCTGCGCTCCTCAGCCTTTCTGAACTGCCTGCAAAGCGGTCCATCGGA
GCCACGTCGCGTCAAGGATCGCATTTTGGCTAGCTTAAACGTGCTCAACA
GCACCGTGGAGCTTCTGGACAAGTGTCTTTTGGGTTATAGCCTTCTTTTT
AGCCGCTTGGAGGAGTGTGCCTCTTCTACGTGTCCACCCAGCATCAACCG
AATGGAGAGTAGCGAGCGCCAGCTGGTTCATCTTTTACCCGAAATCATCG
CTGGTTTTAAGCCACAATTTGATGTACCTCAGCTAACACCTGAGCAGTTG
GGTTCTTCACTTCAACAATGGCTAGATAAAATGAACGCCTTGGCAGCGGC
TCACTTGCAGCAAGTCTTTGCACTAGTCACCAACATGCAGACCATCCAGG
ACATTAAGTCCGCGGCCAGAACTAATGGTCGACCGGATTTCGTTCGCCTA
GAACAGCAATTGCATCTTAAGCGTAGCCAGTTAGACTTCTACGCCAGAAA
GTACGTGCCGTTGATCAACGCCAGAGTACGAGAGATAATTCGCAGCAGCT
GGGCTTCCGCCATGAAGCTGACCTACGAACAGGTACTATTGCTTATTGAA
GCCGGTCAGTCGCAACCGCCTCTACAAATTTGGCGGGAGCAGAGCGATGA
TTTGCCTTTAAGCTTGGCGGCAGCACTCAGCGATCAACCAAAGCGACTGG
CAAATCGGACGAAGGGCTATGACGGCGCAACAATAGAACTGTGTAAACGT
TTTGACTCACATCTGGCGGATATCGTACAGGAGCTGAATGTGATGTTACA
AGAACAAACGACGAGGGCTGAGGACAAGGTTTCACTTATCGAGTTTCTGC
GCGAAACGGCCGAGGAACAGCTGACAGAGTATTTATCCAATTTGAAAGGT
TTAGAGCTAAGGGAACGCCCTGCTCTGCTCCTGGCTTTGAGGAATAGTCT
CGCCTTGGTCGAGCTGTGCCCCAATTTAAAGTTGTGCTTCTGCCAGCCGT
CCAGTTGGCGGCAGTGGACTGACAACTCGGCGGGATTGGGAATTGAGCAT
TGGCAGCGCATTTGTGGCCTGATCGAAAAGGAGATGCTATCCTTTTGGCT
GGTCATCGTTGACGATGTGTTGGCCGGCCACAATTGCGAAGAGAAACTGC
CAAAGGTCATTAATCATGAAGTGGTTCTCAGCGACTTTGCGCTTTGGCAG
ACCTTGACACTGGAACAGCGCGACGAGGACCAGGAGCAGAGTGTTCAGTC
AACCATTCGAATCCCCAGTCAGCCGCGACTCTCTCTGCAGACGTATCTTC
ATCAGCTAATTCAGGCATTGAATTCGGTTGTTCCCCAAACTCTGCCACCC
AAGGTATTGCAAGCATTCATTCAGCGGCTCATAGGGAAACTGCTCTGCCA
CTACGAGGGATTGGCCCACGCGGAATGCACCAAAGCCAGTCAGAATATTG
CCCTGCAACTATACTTTGATCTTAAGTTCCTGGAGCGCGTGTTCGCCATT
TCACGTGAGGAGAGGACTCTCTACGACCAAATCCACGCCCAGCAGAACCA
ACTGCGCGACTACATAGATCCCTTTGACTTCGAGCTGTTTGCCGAGCATA
TAACCGCTCATGTGTCCCGAGCTGCAAGCCGTCTGCAGGGTGAACTGGGA
GTGCTTACTCCCTCGGCAGCTGCTCCCAGTCAGGGTGCAGCTGCTGCCAG
TTCTTTGGCCCATGAAGCAGATCCCAATGTGCTGTGTCTCAGTTCTTCCG
GATCCACGTCGCTGTGGTTCCCGCTGCTGCCCATTGTGATGCCCCAAGCT
GCCGGAAGAGTTACTAGCGCAGAGCGGAAATCTCCGATCCAAGAGCCAGT
TGAGAAAACGGCGACAACGACGCCGACGAGGAAGTCGGGTGGCAATGGAG
CCCGCAAGGGAGACAGCAGCAAATCCAAATCGAGCGCAGCTTCCTTCTTT
GGGATGTCCCAGGAGTGGTTTCGCTAGAAGCTTTCTAGACCAT
BS10283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 2661 | CG4848-PC | 1..2661 | 17..2677 | 13305 | 100 | Plus |
| CG4848-RA | 2661 | CG4848-PA | 1..2661 | 17..2677 | 13305 | 100 | Plus |
| CG4848-RB | 2565 | CG4848-PB | 1..2541 | 17..2557 | 12705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 83..2744 | 17..2678 | 13310 | 100 | Plus |
| CG4848-RA | 2919 | CG4848-RA | 83..2744 | 17..2678 | 13310 | 100 | Plus |
| CG4848-RB | 2973 | CG4848-RB | 83..2623 | 17..2557 | 12705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12217606..12218664 | 1891..833 | 5295 | 100 | Minus |
| 3R | 32079331 | 3R | 12218730..12219415 | 835..150 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 12216881..12217547 | 2557..1891 | 3335 | 100 | Minus |
| 3R | 32079331 | 3R | 12219470..12219604 | 151..17 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 12215833..12215953 | 2678..2558 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:41 has no hits.
BS10283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:47 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 1..2661 | 17..2677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:09 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 87..2753 | 17..2683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:05 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..2743 | 17..2677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:48 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 87..2747 | 17..2677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:04 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..2743 | 17..2677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:04 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12215834..12215953 | 2558..2677 | 100 | <- | Minus |
| 3R | 12216881..12217546 | 1892..2557 | 100 | <- | Minus |
| 3R | 12217606..12218663 | 834..1891 | 100 | <- | Minus |
| 3R | 12218732..12219414 | 151..833 | 100 | <- | Minus |
| 3R | 12219471..12219604 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:05 Download gff for
BS10283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8041556..8041675 | 2558..2677 | 100 | <- | Minus |
| arm_3R | 8042603..8043268 | 1892..2557 | 100 | <- | Minus |
| arm_3R | 8043328..8044385 | 834..1891 | 100 | <- | Minus |
| arm_3R | 8044454..8045136 | 151..833 | 100 | <- | Minus |
| arm_3R | 8045193..8045326 | 17..150 | 100 | | Minus |
BS10283.pep Sequence
Translation from 16 to 2676
> BS10283.pep
MTANLLNLNVDTLFEQHSVSEIDEVHKKIQSVVENKREELRTHVGERYRD
LLQAADTIAAMQTSAGTLMEQVRHVQANCRSLNEQQLLGFQSTANASAKD
AALKERNAGKKLQTYYGTMAQIKLLTALPELIWTHLDNDRFYAATELFIF
SRHISTGLQLDGQSALMQKLPVARKQWEILRPFHVTIKQAILTALEREEL
LQEMTVDCLQSLLLLDKSDLSTVLKSFLNLRSSAFLNCLQSGPSEPRRVK
DRILASLNVLNSTVELLDKCLLGYSLLFSRLEECASSTCPPSINRMESSE
RQLVHLLPEIIAGFKPQFDVPQLTPEQLGSSLQQWLDKMNALAAAHLQQV
FALVTNMQTIQDIKSAARTNGRPDFVRLEQQLHLKRSQLDFYARKYVPLI
NARVREIIRSSWASAMKLTYEQVLLLIEAGQSQPPLQIWREQSDDLPLSL
AAALSDQPKRLANRTKGYDGATIELCKRFDSHLADIVQELNVMLQEQTTR
AEDKVSLIEFLRETAEEQLTEYLSNLKGLELRERPALLLALRNSLALVEL
CPNLKLCFCQPSSWRQWTDNSAGLGIEHWQRICGLIEKEMLSFWLVIVDD
VLAGHNCEEKLPKVINHEVVLSDFALWQTLTLEQRDEDQEQSVQSTIRIP
SQPRLSLQTYLHQLIQALNSVVPQTLPPKVLQAFIQRLIGKLLCHYEGLA
HAECTKASQNIALQLYFDLKFLERVFAISREERTLYDQIHAQQNQLRDYI
DPFDFELFAEHITAHVSRAASRLQGELGVLTPSAAAPSQGAAAASSLAHE
ADPNVLCLSSSGSTSLWFPLLPIVMPQAAGRVTSAERKSPIQEPVEKTAT
TTPTRKSGGNGARKGDSSKSKSSAASFFGMSQEWFR*
BS10283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-PC | 886 | CG4848-PC | 1..886 | 1..886 | 4488 | 100 | Plus |
| CG4848-PA | 886 | CG4848-PA | 1..886 | 1..886 | 4488 | 100 | Plus |
| CG4848-PB | 854 | CG4848-PB | 1..847 | 1..847 | 4287 | 100 | Plus |
