Clone Sequence Records
BS10289.complete Sequence
2159 bp assembled on 2009-12-07
GenBank Submission: KX801975
> BS10289.complete
GAAGTTATCAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGC
CGCCAGGACCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGC
GCGGGAGGAGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGG
AACAAAACTGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGT
CTGGCAAGGTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGA
ACCCTCAACAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAG
CAGCAATGGCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAG
GCCTCTCGCAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACG
CCATCCGCCGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTC
ATCCGCTCAGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGA
ATGCCAGCAACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTG
ACGTTGAAGCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAAC
CAACAACACACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGG
GACCACCACCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTG
GAGCGCATGAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAG
TTCGAGTGTCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACA
GCAGTGGGAGTGGAGGTGGAAGTGGAAGTGTCAAGAGCAAGGCGGCCAAC
CTAAATATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAATCAACCGT
GAGTGCCTCGACCGCGTCCTTAAACAGCAGTCTAACCTCCTCGACGGGAT
CAGTACGCAATCTGGCGCCAAATAAGTCCACTCTATTTGGTGGCAGCAGT
GGCTCTAGTTCCGGTTCGAGTTCTGGTGGTGGTTATGCATCTGTGCATAA
ATCCTCGCCACCCTCAACGGCAGATAGCACGCCGTCGGTGACGCCCACAC
CGCCACCGCTTCAGCTGCCGATGAAGCCGGCCATCAGCTTTGGCAAGCCC
AATTTTGCTCCGAAGCCACCGGGCTTGAATCAACTGGCGATGGCCAACGG
ACAGCAGCGTCCGGCGGTGACCAGGCACCACAGCATGAAGTCGCCCAGAT
CTCCGCCTGCGGCCGGTATCGTCAACGGCCTTGTGTTCCCCACCCAGCAG
CATTTAGGCACCCTGCGCGGTCCACTGCAGTTCCATGGCAGCGAATCCAG
CAGCCCCAACACCAGTGCAGGCAGTATGAGATGTGCCCCTAACCCGCCAA
AGTCCCGCCCATCGGTAAAACCACCACCGCCACCCACGCCGGCTCGCAGT
TTCTCCAACACCAATCTGAACAATATCGGCGGATCGACGATGTTCAGTGC
GGTGAACACAGCTCTTATCCAGAGCTCGGCCATCAGTTCTCAGGCTCCCT
CACCGCCAATTACCCAGCCGCCATCATCGTCGAGCAGCAGCAATAGCGTG
GCTGCCCTGCGCGACCAATTCCGTGGAGGCGCCGGAATGTCTAACGGAGC
ACCATCACCGCCACTGCCGCCGACGCCCGCACCCTCGTCCAATCCATCCT
CAGCAAGCGCCAGTCCCAAATCGTTGCTGCGAGACAATGTCAAACCTATT
ATCCTAAATGGAGGTCCTCTAAATCCGCCAGCGCCGCCACCACACCGCAG
CTGCCCACCTCCGCCGCCTCCACAGCGACAGTCGAGCAATGGTGGTTCCG
GATCGGGATCAGCGCCAGTTCCGCCGCAGCGTCACTCATCCATTCGGCCC
AACGCCCCATCGACGCCACCAACGCACATGGCCAATGCCTCGCATCAGTT
TGGCAGCAGCTCGGGCTTGTCATCAGGCTCGGGAGCAGGAGCTGCAGCCA
GCGTGGGTCGACTGGTCAACGACTTGGAGACCAAGTTCGGGAAGCGATTC
CACAACGTCACTGAATTCCCCAAGCCGCCGCCGTTTCTAAATATACAAAA
AGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGTAGAAGCTTT
CTAGACCAT
BS10289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 2127 | CG13503-PK | 1..2127 | 17..2143 | 10635 | 100 | Plus |
| Vrp1-RH | 2157 | CG13503-PH | 31..2157 | 17..2143 | 10635 | 100 | Plus |
| Vrp1-RF | 2127 | CG13503-PF | 1..2127 | 17..2143 | 10635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 193..2319 | 17..2143 | 10635 | 100 | Plus |
| Vrp1-RH | 3134 | CG13503-RH | 111..2237 | 17..2143 | 10635 | 100 | Plus |
| Vrp1-RF | 3407 | CG13503-RF | 384..2510 | 17..2143 | 10635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22109586..22110023 | 1841..1404 | 2190 | 100 | Minus |
| 2R | 25286936 | 2R | 22110546..22110938 | 1248..856 | 1965 | 100 | Minus |
| 2R | 25286936 | 2R | 22112210..22112588 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 22108478..22108780 | 2143..1841 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 22111862..22112140 | 673..395 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 22111328..22111511 | 855..672 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 22110206..22110363 | 1403..1246 | 790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2666 | 256..606 | 262 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7312 | 215..726 | 242 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2921 | 256..686 | 217 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3012 | 245..659 | 211 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2889 | 256..802 | 194 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 226..318 | 192 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6945 | 256..476 | 186 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 245..306 | 184 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2822 | 226..686 | 180 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2468 | 245..306 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2482 | 256..317 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2561..3011 | 229..670 | 166 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1586 | 256..297 | 165 | 88.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 252..310 | 160 | 74.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 91..201 | 240..353 | 157 | 63.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11269..11379 | 240..353 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..3031 | 227..473 | 153 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7259 | 225..639 | 149 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1167 | 217..320 | 147 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2440 | 217..305 | 143 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 217..306 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2838 | 245..304 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1143 | 257..305 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1126 | 266..330 | 135 | 69.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 956..1022 | 244..306 | 135 | 73.1 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..590 | 256..296 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2824 | 256..305 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2978 | 257..318 | 121 | 66.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 896..953 | 256..314 | 121 | 69.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12074..12131 | 256..314 | 121 | 69.5 | Plus |
BS10289.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:20 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RD | 175..1993 | 17..1835 | 100 | -> | Plus |
| Vrp1-RD | 2122..2430 | 1836..2143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:29 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 671..2797 | 17..2143 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:28 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RD | 175..1993 | 17..1835 | 100 | -> | Plus |
| Vrp1-RD | 2122..2430 | 1836..2143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:59 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 384..2510 | 17..2143 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:59 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22108478..22108780 | 1841..2143 | 100 | <- | Minus |
| 2R | 22109587..22110023 | 1404..1840 | 100 | <- | Minus |
| 2R | 22110206..22110360 | 1249..1403 | 100 | <- | Minus |
| 2R | 22110546..22110938 | 856..1248 | 100 | <- | Minus |
| 2R | 22111328..22111509 | 674..855 | 100 | <- | Minus |
| 2R | 22111862..22112139 | 396..673 | 100 | <- | Minus |
| 2R | 22112210..22112588 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:29 Download gff for
BS10289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17995983..17996285 | 1841..2143 | 100 | <- | Minus |
| arm_2R | 17997092..17997528 | 1404..1840 | 100 | <- | Minus |
| arm_2R | 17997711..17997865 | 1249..1403 | 100 | <- | Minus |
| arm_2R | 17998051..17998443 | 856..1248 | 100 | <- | Minus |
| arm_2R | 17998833..17999014 | 674..855 | 100 | <- | Minus |
| arm_2R | 17999367..17999644 | 396..673 | 100 | <- | Minus |
| arm_2R | 17999715..18000093 | 17..395 | 100 | | Minus |
BS10289.3prime Sequence
958 bp (869 high quality bases) assembled on 2006-04-19
> BS10289.3prime
ATGGTCTAGAAAGCTTCTACATACCATTGGTGGCCTTAAACGTGCGACTA
GGATAGACTTTTTGTATATTTAGAAACGGCGGCGGCTTGGGGAATTCAGT
GACGTTGTGGAATCGCTTCCCGAACTTGGTCTCCAAGTCGTTGACCAGTC
GACCCACGCTGGCTGCAGCTCCTGCTCCCGAGCCTGATGACAAGCCCGAG
CTGCTGCCAAACTGATGCGAGGCATTGGCCATGTGCGTTGGTGGCGTCGA
TGGGGCGTTGGGCCGAATGGATGAGTGACGCTGCGGCGGAACTGGCGCTG
ATCCCGATCCGGAACCACCATTGCTCGACTGTCGCTGTGGAGGCGGCGGA
GGTGGGCAGCTGCGGTGTGGTGGCGGCGCTGGCGGATTTAGAGGACCTCC
ATTTAGGATAATAGGTTTGACATTGTCTCGCAGCAACGATTTGGGACTGG
CGCTTGCTGAGGATGGATTGGACGAGGGTGCGGGCGTCGGCGGCAGTGGC
GGTGATGGTGCTCCGTTAGACATTCCGGCGCCTCCACGGAATTGGTCGCG
CAGGGCAGCCACGCTATTGCTGCTGCTCGACGATGATGGCGGCTGGGTAA
TTGGCGGTGAGGGAGCCTGAGAACTGATGGCCGAGCTCTGGATAAGAGCT
GTGTTCACCGCACTGAACATCGTCGATCCGCCGATATTGTTCAGATTGGT
GTTGGAGAAACTGCGAGCCGGCGTGGGTGGCGGTGGTGGTTTTACCGATG
GGCGGGACTTTGGCGGGTTAGGGGCACATCTCATACTGCCTGCACTGGTG
TTGGGGCTGCTGGATTCGCTGCCATGGAACTGCAGTGGACCGCGCAGGGT
GCCTAAATGCTGCTGGGTGGGGACACAAGGCCGTTGACGATACCGGCCGC
AGGCGGAGATCTGGGCGACTTCATGCTGTGGTGCCTGGTCACCGCCGGAC
GCTGCTGT
BS10289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13503-PF | 2127 | CG13503-RF | 1271..2127 | 873..17 | 4285 | 100 | Minus |
| CG13503-PB | 2256 | CG13503-RB | 1271..1824 | 873..320 | 2770 | 100 | Minus |
| CG13503-PA | 2256 | CG13503-RA | 1271..1824 | 873..320 | 2770 | 100 | Minus |
| CG13503-PD | 2256 | CG13503-RD | 1271..1824 | 873..320 | 2770 | 100 | Minus |
| CG13503-PC | 2256 | CG13503-RC | 1271..1824 | 873..320 | 2770 | 100 | Minus |
| CG13503-PE | 2286 | CG13503-RE | 1301..1854 | 873..320 | 2770 | 100 | Minus |
| CG13503-PB | 2256 | CG13503-RB | 1954..2256 | 319..17 | 1515 | 100 | Minus |
| CG13503-PA | 2256 | CG13503-RA | 1954..2256 | 319..17 | 1515 | 100 | Minus |
| CG13503-PD | 2256 | CG13503-RD | 1954..2256 | 319..17 | 1515 | 100 | Minus |
| CG13503-PC | 2256 | CG13503-RC | 1954..2256 | 319..17 | 1515 | 100 | Minus |
| CG13503-PE | 2286 | CG13503-RE | 1984..2286 | 319..17 | 1515 | 100 | Minus |
| CG13503-PF | 2127 | CG13503-RF | 1185..1270 | 958..873 | 430 | 100 | Minus |
| CG13503-PB | 2256 | CG13503-RB | 1185..1270 | 958..873 | 430 | 100 | Minus |
| CG13503-PA | 2256 | CG13503-RA | 1185..1270 | 958..873 | 430 | 100 | Minus |
| CG13503-PD | 2256 | CG13503-RD | 1185..1270 | 958..873 | 430 | 100 | Minus |
| CG13503-PC | 2256 | CG13503-RC | 1185..1270 | 958..873 | 430 | 100 | Minus |
| CG13503-PE | 2286 | CG13503-RE | 1215..1300 | 958..873 | 430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 1377..2319 | 958..17 | 4690 | 99.9 | Minus |
| Vrp1-RH | 3134 | CG13503-RH | 1295..2237 | 958..17 | 4690 | 99.9 | Minus |
| Vrp1-RF | 3407 | CG13503-RF | 1568..2510 | 958..17 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22109586..22110023 | 319..756 | 2190 | 100 | Plus |
| 2R | 25286936 | 2R | 22108478..22108780 | 17..319 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 22110206..22110363 | 757..913 | 740 | 99.4 | Plus |
| 2R | 25286936 | 2R | 22110546..22110593 | 911..958 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:20:51 has no hits.
BS10289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:24 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PF | 1185..2127 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:41 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PF | 1185..2127 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:59:37 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 1855..2797 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:01:22 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 1568..2510 | 17..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:01:22 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22108478..22108780 | 17..319 | 100 | <- | Plus |
| 2R | 22109587..22110023 | 320..756 | 100 | <- | Plus |
| 2R | 22110206..22110360 | 757..910 | 99 | <- | Plus |
| 2R | 22110546..22110593 | 911..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:59:37 Download gff for
BS10289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17997711..17997865 | 757..910 | 99 | <- | Plus |
| arm_2R | 17998051..17998098 | 911..958 | 100 | | Plus |
| arm_2R | 17995983..17996285 | 17..319 | 100 | <- | Plus |
| arm_2R | 17997092..17997528 | 320..756 | 100 | <- | Plus |
BS10289.5prime Sequence
939 bp (814 high quality bases) assembled on 2006-04-19
> BS10289.5prime
GAAGTTATCAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGC
CGCCAGGACCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGC
GCGGGAGGAGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGG
AACAAAACTGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGT
CTGGCAAGGTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGA
ACCCTCAACAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAG
CAGCAATGGCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAG
GCCTCTCGCAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACG
CCATCCGCCGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTC
ATCCGCTCAGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGA
ATGCCAGCAACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTG
ACGTTGAAGCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAAC
CAACAACACACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGG
GACCACCACCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTG
GAGCGCATGAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAG
TTCGAGTGTCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACA
GCAGTGGGAGTGGAGGTGGAAGTGGAAGTGTCAAGAGCAAGGCGGGCAAC
CTAAATATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAATCAACCGT
GAGTGCCTCGACCGCGTCCTTAAACAGCAGTCTAACCTC
BS10289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13503-PB | 2256 | CG13503-RB | 1..923 | 17..939 | 4590 | 99.8 | Plus |
| CG13503-PF | 2127 | CG13503-RF | 1..923 | 17..939 | 4590 | 99.8 | Plus |
| CG13503-PA | 2256 | CG13503-RA | 1..923 | 17..939 | 4590 | 99.8 | Plus |
| CG13503-PD | 2256 | CG13503-RD | 1..923 | 17..939 | 4590 | 99.8 | Plus |
| CG13503-PC | 2256 | CG13503-RC | 1..923 | 17..939 | 4590 | 99.8 | Plus |
| CG13503-PE | 2286 | CG13503-RE | 31..953 | 17..939 | 4590 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 193..1115 | 17..939 | 4600 | 99.9 | Plus |
| Vrp1-RJ | 3888 | CG13503-RJ | 671..1593 | 17..939 | 4600 | 99.9 | Plus |
| Vrp1-RI | 3410 | CG13503-RI | 193..1115 | 17..939 | 4600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22112210..22112588 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 22111862..22112140 | 673..395 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 22111328..22111511 | 855..672 | 905 | 99.5 | Minus |
| 2R | 25286936 | 2R | 22110855..22110938 | 939..856 | 420 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2666 | 256..606 | 262 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7312 | 215..726 | 242 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2921 | 256..686 | 217 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3012 | 245..659 | 211 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2889 | 256..802 | 194 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 226..318 | 192 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6960 | 259..685 | 191 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6945 | 256..476 | 186 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 245..306 | 184 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2822 | 226..686 | 180 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2468 | 245..306 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2482 | 256..317 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2561..3011 | 229..670 | 166 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1586 | 256..297 | 165 | 88.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7050 | 395..643 | 161 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 252..310 | 160 | 74.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 91..201 | 240..353 | 157 | 63.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11269..11379 | 240..353 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..3031 | 227..473 | 153 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7259 | 225..639 | 149 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1167 | 217..320 | 147 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2440 | 217..305 | 143 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 217..306 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2838 | 245..304 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1143 | 257..305 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1126 | 266..330 | 135 | 69.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 956..1022 | 244..306 | 135 | 73.1 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..590 | 256..296 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2824 | 256..305 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2978 | 257..318 | 121 | 66.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 896..953 | 256..314 | 121 | 69.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12074..12131 | 256..314 | 121 | 69.5 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4555 | 238..302 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7144..7237 | 281..379 | 114 | 60.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8597..8690 | 281..379 | 114 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1116 | 257..305 | 112 | 73.5 | Plus |
BS10289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:25 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PC | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:43 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PE | 31..953 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:28 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..1115 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:43 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..1115 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:43 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22110855..22110938 | 856..939 | 100 | <- | Minus |
| 2R | 22111328..22111509 | 674..855 | 99 | <- | Minus |
| 2R | 22111862..22112139 | 396..673 | 100 | <- | Minus |
| 2R | 22112210..22112588 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:28 Download gff for
BS10289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17998360..17998443 | 856..939 | 100 | <- | Minus |
| arm_2R | 17998833..17999014 | 674..855 | 99 | <- | Minus |
| arm_2R | 17999367..17999644 | 396..673 | 100 | <- | Minus |
| arm_2R | 17999715..18000093 | 17..395 | 100 | | Minus |
BS10289.pep Sequence
Translation from 16 to 2142
> BS10289.pep
MAIPPPPGPPPPPGPPPPPAMGGLKLGGAGGADARSALLSSIQKGTKLKK
TTTVDKSGPALSGKVCGGDGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLG
NGTPKLGGLFEGLSQMPKLKPVNGIRATPSAGSAATTTSKSTTNSSAQQR
SNSPPAATSASNASNGPMDFNTELTKHLTLKRQKQQQQQQPQPPTNNTHI
NATEANLRTNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVKA
ASPTLSDSGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTA
SLNSSLTSSTGSVRNLAPNKSTLFGGSSGSSSGSSSGGGYASVHKSSPPS
TADSTPSVTPTPPPLQLPMKPAISFGKPNFAPKPPGLNQLAMANGQQRPA
VTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRGPLQFHGSESSSPNTS
AGSMRCAPNPPKSRPSVKPPPPPTPARSFSNTNLNNIGGSTMFSAVNTAL
IQSSAISSQAPSPPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPSPPL
PPTPAPSSNPSSASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCPPPP
PPQRQSSNGGSGSGSAPVPPQRHSSIRPNAPSTPPTHMANASHQFGSSSG
LSSGSGAGAAASVGRLVNDLETKFGKRFHNVTEFPKPPPFLNIQKVYPSR
TFKATNGM*
BS10289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-PK | 708 | CG13503-PK | 1..708 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PH | 718 | CG13503-PH | 11..718 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PF | 708 | CG13503-PF | 1..708 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PJ | 809 | CG13503-PJ | 1..706 | 1..706 | 3680 | 100 | Plus |
| Vrp1-PI | 809 | CG13503-PI | 1..706 | 1..706 | 3680 | 100 | Plus |
