Clone Sequence Records
BS10290.3prime Sequence
890 bp (886 high quality bases) assembled on 2006-04-19
> BS10290.3prime
ATGGTCTAGAAAGCTTTCATTTCAGATCAAGCTTCTTGGGTTTCGTGCTC
ACGTCGTGCAGACTAACTACGTTATAAGTGGAGACGCAGGGCTGAAGCTT
GTTCTTGAATATATCGTTCTCGGATTTCGAGGAGCATATTGAACCGCCGA
TTTCTGTGTGGCTTGAGTCAGGTAACGAGACCCTCAGCTCGTGGTTACTC
ACTGAGGTGTTTAGCTGGAACTGTTTCGCGTAAAGAGTGTCCATTTTGTT
GTGCTTGGCTTCATTAACGCACAACTTGTGTCCGGTTCTGTGGGATGCTA
ATCTGGCGTCATCGCTGCCCCCAATCGAGGACTCCTCGATGTGGGAGAAG
CTCTCCTGCGGTGAAATAGTGGACAGCACCGAAGTACTGGAGTATAGGTA
GCCGGAAAAATACAGATTCGGATTGGCCTCGTGGGCCTTGCACGGCACTA
TCCACGAGAAACTGAAAGTAGAGGGATTCACCTCCTGGGTGAGCCATGGA
TCTGTGATTAACTGGTGCATGGTGCACCGGTACTTGGGATCCTTATTCAG
CATGGAGCTCAACAGACGGCTCAATTGCTCGGACACAGCTTTCGGTATTT
GAATCTCGGCCTTCAATGTCTCCTCCACATCGATGAATGGATTTTCGAAA
AACATCAGAACGTAAAGCGTCACACCAAGGGCCCAAATCTCCAGCTCGGG
ACCCACGTATCTGTTTCCGGCCAGAACCTCCGGACTGCAGTACTCCGTCG
TGCCGTAGAACGTGGAGAAGAATTTTCCCTCCTCCATGAAGGTCGCCGAT
CCGAAGTCAATCAGCTTTATGGGTGAGTTCTGGTCAATTATAATGTTCTC
GTCCTTGATGTCCCGATGCAGTATCTTCTGTTCGTGCAGA
BS10290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3105-PA | 2958 | CG3105-RA | 2153..2958 | 822..17 | 4030 | 100 | Minus |
| CG3105-PA | 2958 | CG3105-RA | 2085..2149 | 890..826 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-RA | 3184 | CG3105-RA | 2178..3052 | 890..16 | 4330 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23990983..23991614 | 890..259 | 3115 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23991673..23991917 | 260..16 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:47:20 has no hits.
BS10290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:26 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3105-PA | 2086..2958 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:44 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3105-PA | 2086..2958 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:46 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 2179..3055 | 11..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:49 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 2179..3055 | 11..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:49 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23990984..23991614 | 259..889 | 99 | -> | Minus |
| 2R | 23991675..23991920 | 11..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:46 Download gff for
BS10290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19878507..19879137 | 259..889 | 99 | -> | Minus |
| arm_2R | 19879198..19879443 | 11..258 | 99 | | Minus |
BS10290.5prime Sequence
931 bp (849 high quality bases) assembled on 2006-04-19
> BS10290.5prime
GAAGTTATCAGTCGACATGGAGGATCAGGGCGACGTGACAGACCAAGCCG
CTGGTAAGCTGAGTAGTTCGAATGCCCAGTGCTCCAGAAACCGATGTGCT
AATGATGACCCCATTATGGGCAGCCACAGTCAGAGTCGCCAGAACTCGTC
CGGCATGCTGAACATGATGGACGCCAGCTCCTTCAGCATGCCCCCCCCCA
ATCTGCACTCCTCAAAGGTGATCAACCCGAACAAGGCGATATTCACAATC
GACGCGAACACAGGGCAAATTTTTATAGTGAACAACAAGGCCTGCCAGCT
GCTGGGCTACACGTCGCAGGAGTTGAGGAACAAGGGATTCTTCGACCTGC
TTAACGGCAAGACAGAGAGCCACATCTCCTCCCTGGCGGAGATGCAGATC
GAAGGCGATGAGGGCCGGGTCGTCCTGCTAAGTGGAAAGGTCATCGAGAT
GAAGACCAAGTCGGGCGGCAAGATCCTGGTCTCTCTCTGGATCCGGCAGA
TCAGCAGCGATGGCCGACACATAGCCGTCGCGGAGCCTGTGGAGAGGCAT
ATTTGCCACATCAGCACCGATAGATCCGGAGTGATAACATCCGTTGACTC
CACCACGGCCACCATATTCTTTTATGAATCCGTCGAAAGCGTGGTGGGTG
TCAGCATTGTCACCCTTATCCCGTTTATAAAGCTGCCCGATCCGGATAGC
CGTGAGATCCCCAAGAGCCTGCGGAAGCAGAGAGCTACTGGTCGAACTAC
GGATAACGTANAGTTTCCCCTGTGCTTGCTAATAGCCCTGGACGAGGATG
CTTCTGCGGGGTATTCCCATTCGGGAAAAACGGTCTAAATATCACCGTCT
GGGTGTCCAGAATCTTAGTGGCCTGATTGTGGTAGATGAACATAGGCACA
TACTGATGTGCAACCAGCCTTTCTCGCTGCT
BS10290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3105-PA | 2958 | CG3105-RA | 1..815 | 17..831 | 4056 | 99.8 | Plus |
| CG3105-PA | 2958 | CG3105-RA | 884..917 | 898..931 | 170 | 100 | Plus |
| CG3105-PA | 2958 | CG3105-RA | 842..875 | 856..889 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-RA | 3184 | CG3105-RA | 94..1010 | 17..931 | 4479 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23988986..23989815 | 104..931 | 3944 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23988831..23988918 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:54:56 has no hits.
BS10290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:27 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3105-PA | 1..917 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:45 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3105-PA | 1..917 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:04:23 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..1010 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:39 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..1010 | 17..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:39 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23988831..23988918 | 17..104 | 100 | -> | Plus |
| 2R | 23988987..23989815 | 105..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:04:23 Download gff for
BS10290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19876354..19876441 | 17..104 | 100 | -> | Plus |
| arm_2R | 19876510..19877338 | 105..931 | 99 | | Plus |
BS10290.complete Sequence
2990 bp assembled on 2009-08-24
GenBank Submission: KX805875
> BS10290.complete
GAAGTTATCAGTCGACATGGAGGATCAGGGCGACGTGACAGACCAAGCCG
CTGGTAAGCTGAGTAGTTCGAATGCCCAGTGCTCCAGAAACCGATGTGCT
AATGATGACCCCATTATGGGCAGCCACAGTCAGAGTCGCCAGAACTCGTC
CGGCATGCTGAACATGATGGACGCCAGCTCCTTCAGCATGCCCCCCCCCA
ATCTGCACTCCTCAAAGGTGATCAACCCGAACAAGGCGATATTCACAATC
GACGCGAACACAGGGCAAATTTTTATAGTGAACAACAAGGCCTGCCAGCT
GCTGGGCTACACGTCGCAGGAGTTGAGGAACAAGGGATTCTTCGACCTGC
TTAACGGCAAGACAGAGAGCCACATCTCCTCCCTGGCGGAGATGCAGATC
GAAGGCGATGAGGGCCGGGTCGTCCTGCTAAGTGGAAAGGTCATCGAGAT
GAAGACCAAGTCGGGCGGCAAGATCCTGGTCTCTCTCTGGATCCGGCAGA
TCAGCAGCGATGGCCGACACATAGCCGTCGCGGAGCCTGTGGAGAGGCAT
ATTTGCCACATCAGCACCGATAGATCCGGAGTGATAACATCCGTTGACTC
CACCACGGCCACCATATTCTTTTATGAATCCGTCGAAAGCGTGGTGGGTG
TCAGCATTGTCACCCTTATCCCGTTTATAAAGCTGCCCGATCCGGATAGC
CGTGAGATCCCCAAGAGCCTGCGGAAGCAGAGAGCTACTGGTCGAACTAC
GGATAACGTAAAGTTTCCCCTGTGCTTGCTAATAGCCCTGGACGAGGATG
CTTCTGCGGGGTATTCCCATTCGGGAAAAACCGGTCTAAATATCACCGTC
TGGGTGTTCCAGAATCTTAGTGGCCTGATTGTGGTAGATGACATAGGCAA
CATACTGATGTGCAACCAGCCTTTCTCGCTGCTAATGTTCGGATATGGTC
AGGACAAGATAATGAACATGCATATATCGGCGATCCTACCCAATTTCGGC
AAGGACTCTCGCGAGGAGAAGAGTCCGAATGTTTCGAACACCTCGATAAC
CAGTAACGACTGGGAGCCGGACACGGATCCCCTCGTCGTGGACAACGACT
CCTCGCTGCAATCCTGCAAGAAGAGCTCGACTAACAGGACGGCGCCCAAC
AACGAACAGTCTTCGGTGGGCGATGCCCACCTAAGCTGCAATCTGGAGAA
CAGCAGTGGTCTATTCTGCGACCTCCGCCAGCCAGATGATTGTACAATAG
ATGACATTCTAACACCTGTAAATGCCTCAAACAGTTTCCCCGCTGACGAG
TTTGAGGTAGGATCGCAGTCGCAGGTGAATGAGTCGTCCCTTGACAAGGC
GAAGTCCGCGTCCACGGAGACCTGTGATGCCTCCGGCAGCAATCCCGCCA
CCAGACTGCTTAGTTCCATCAACGGAAGCTTTGTGGGGGAGGCCATTCAC
GCCGATGGCTCCGTCATAGAGGTAGTCTACTCCGTGCTCCTCCAGATACT
GCCCTGCTCCAACCGGGTGTACTGCATCTGGGTGTGCCGCAACCCCAGCA
CTCGGCTGGACGGTGAGAAGTACAACTATGCAAACCTAACGTCCACATTC
AACAGCATGGCCAGCACTGTTGAGCAGTCGCTGGGCCAGGTGATAAAGAC
CACCGCTGCCCAGAACTCCAGCAGACCCAATTCTCTGTCCTTGGTGTCCA
AGTACGAGGACGAATTGTACCTGGGCGACTACAGCAAATACTACACGTCC
ATCCGCCAGATCGGAAGAGGAGCCTATGGGTATGTGAATATGGCTTTCCG
GAACAGCGACCGCCTGCTGGTGATCACCAAGTTTATTCTCAAGGAGAAGC
TCTGCTCTCAGTTTATGGTTAAGAGCCGCGACTGCAAGGAAGTTCCTATC
GAGATCCACCTGCTGCAGACCCTGAACCACAAGAACATTGTGTCCGTTCT
CGATGTTTTCGAAAATGATCTATTCTACCAGCTGGTCATGGAGAAGCACG
GATCCGGAATGGATCTATGGACGTTCATAGAGCGGCGGCCCCTGATGGAC
GAAAAGCTGGGAAGCTACATTTTTCGTCAGGTGGCCGATGCCGTCAACTA
TCTGCACGAACAGAAGATACTGCATCGGGACATCAAGGACGAGAACATTA
TAATTGACCAGAACTTCACCATAAAGCTGATTGACTTCGGATCGGCGACC
TTCATGGAGGAGGGAAAATTCTTCTCCACGTTCTACGGCACGACGGAGTA
CTGCAGTCCGGAGGTTCTGGCCGGAAACAGATACGTGGGTCCCGAGCTGG
AGATTTGGGCCCTTGGTGTGACGCTTTACGTTCTGATGTTTTTCGAAAAT
CCATTCATCGATGTGGAGGAGACATTGAAGGCCGAGATTCAAATACCGAA
AGCTGTGTCCGAGCAATTGAGCCGTCTGTTGAGCTCCATGCTGAATAAGG
ATCCCAAGTACCGGTGCACCATGCACCAGTTAATCACAGATCCATGGCTC
ACCCAGGAGGTGAATCCCTCTACTTTCAGTTTCTCGTGGATAGTGCCGTG
CAAGGCCCACGAGGCCAATCCGAATCTGTATTTTTCCGGCTACCTATACT
CCAGTACTTCGGTGCTGTCCACTATTTCACCGCAGGAGAGCTTCTCCCAC
ATCGAGGAGTCCTCGATTGGGGGCAGCGATGACGCCAGATTAGCATCCCA
CAGAACCGGACACAAGTTGTGCGTTAATGAAGCCAAGCACAACAAAATGG
ACACTCTTTACGCGAAACAGTTCCAGCTAAACACCTCAGTGAGTAACCAC
GAGCTGAGGGTCTCGTTACCTGACTCAAGCCACACAGAAATCGGCGGTTC
AATATGCTCCTCGAAATCCGAGAACGATATATTCAAGAACAAGCTTCAGC
CCTGCGTCTCCACTTATAACGTAGTTAGTCTGCACGACGTGAGCACGAAA
CCCAAGAAGCTTGATCTGAAATGAAAGCTTTCTAGACCAT
BS10290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-RA | 2958 | CG3105-PA | 1..2958 | 17..2974 | 14790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-RA | 3184 | CG3105-RA | 94..3052 | 17..2975 | 14795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23988986..23991614 | 104..2732 | 13145 | 100 | Plus |
| 2R | 25286936 | 2R | 23991673..23991917 | 2731..2975 | 1225 | 100 | Plus |
| 2R | 25286936 | 2R | 23988831..23988918 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:27:11 has no hits.
BS10290.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:27 Download gff for
BS10290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3105-RA | 115..3071 | 17..2973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:03 Download gff for
BS10290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..3050 | 17..2973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:56 Download gff for
BS10290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pask-RA | 94..3050 | 17..2973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:56 Download gff for
BS10290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23988831..23988918 | 17..104 | 100 | -> | Plus |
| 2R | 23988987..23991614 | 105..2732 | 100 | -> | Plus |
| 2R | 23991675..23991915 | 2733..2973 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:03 Download gff for
BS10290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19876354..19876441 | 17..104 | 100 | -> | Plus |
| arm_2R | 19876510..19879137 | 105..2732 | 100 | -> | Plus |
| arm_2R | 19879198..19879438 | 2733..2973 | 100 | | Plus |
BS10290.pep Sequence
Translation from 16 to 2973
> BS10290.pep
MEDQGDVTDQAAGKLSSSNAQCSRNRCANDDPIMGSHSQSRQNSSGMLNM
MDASSFSMPPPNLHSSKVINPNKAIFTIDANTGQIFIVNNKACQLLGYTS
QELRNKGFFDLLNGKTESHISSLAEMQIEGDEGRVVLLSGKVIEMKTKSG
GKILVSLWIRQISSDGRHIAVAEPVERHICHISTDRSGVITSVDSTTATI
FFYESVESVVGVSIVTLIPFIKLPDPDSREIPKSLRKQRATGRTTDNVKF
PLCLLIALDEDASAGYSHSGKTGLNITVWVFQNLSGLIVVDDIGNILMCN
QPFSLLMFGYGQDKIMNMHISAILPNFGKDSREEKSPNVSNTSITSNDWE
PDTDPLVVDNDSSLQSCKKSSTNRTAPNNEQSSVGDAHLSCNLENSSGLF
CDLRQPDDCTIDDILTPVNASNSFPADEFEVGSQSQVNESSLDKAKSAST
ETCDASGSNPATRLLSSINGSFVGEAIHADGSVIEVVYSVLLQILPCSNR
VYCIWVCRNPSTRLDGEKYNYANLTSTFNSMASTVEQSLGQVIKTTAAQN
SSRPNSLSLVSKYEDELYLGDYSKYYTSIRQIGRGAYGYVNMAFRNSDRL
LVITKFILKEKLCSQFMVKSRDCKEVPIEIHLLQTLNHKNIVSVLDVFEN
DLFYQLVMEKHGSGMDLWTFIERRPLMDEKLGSYIFRQVADAVNYLHEQK
ILHRDIKDENIIIDQNFTIKLIDFGSATFMEEGKFFSTFYGTTEYCSPEV
LAGNRYVGPELEIWALGVTLYVLMFFENPFIDVEETLKAEIQIPKAVSEQ
LSRLLSSMLNKDPKYRCTMHQLITDPWLTQEVNPSTFSFSWIVPCKAHEA
NPNLYFSGYLYSSTSVLSTISPQESFSHIEESSIGGSDDARLASHRTGHK
LCVNEAKHNKMDTLYAKQFQLNTSVSNHELRVSLPDSSHTEIGGSICSSK
SENDIFKNKLQPCVSTYNVVSLHDVSTKPKKLDLK*
BS10290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pask-PA | 985 | CG3105-PA | 1..985 | 1..985 | 5097 | 100 | Plus |
| CG43143-PD | 1180 | CG11870-PD | 73..328 | 579..835 | 376 | 32.7 | Plus |
| CG43143-PG | 1199 | CG43143-PG | 73..328 | 579..835 | 376 | 32.7 | Plus |
| CG43143-PB | 1427 | CG11870-PB | 73..328 | 579..835 | 376 | 32.7 | Plus |
| CG43143-PC | 1427 | CG11870-PC | 73..328 | 579..835 | 376 | 32.7 | Plus |
