Clone Sequence Records
BS10291.3prime Sequence
958 bp (819 high quality bases) assembled on 2006-04-19
> BS10291.3prime
ATGGTCTAGAAAGCTTCTACGAGTAGAAGGTCAGCACACTCGTCTGATTG
CCGCGCACAAAAAGGAAGGGCGGCATGTCCCGACTCAGGCTCTCCAGCCA
GGCCATGTAGAGGGGTGCGGAGACGATGTTCTTCCGTGGCATCGGCAGGG
TCATCACCACGAGGTCCGACTTGGTCGACTGCTCCCGCAGGTACTCCCGC
AGCCGCAAATACCGATTCGTCTTGTCCTGCACCGCCAACAGATCATCGTC
GGTTATGAGGGCATCGTCCTCGTTGAGAGTTGCCCTGCTGCTGGTGCCAT
TCTCGCCATCCTTTTCGGTAACAACAAAGTCCTTAATCAGCTCATTAAAG
AACTGCGTGGATGTTTCCTGGGGCTTCTTCGTTATATCCGGAATCAGTGT
TAAATCCGAGTAATCGATCCGGAATTTCGACAGCAAACTGGCCATTGAGC
GCTGCTCGAACTCCAATTCCGAATTTTTGTTAGCCAGCGCGTAAACTCTC
AATTTGCAGGATTGCCAGGTGCGCCGCGTACTGATGATGTAGGGCAAGAG
GAGAGTGAGTCCTCCGTCATCGTACAACCACCAGACATCGATGACGGCGT
GGCTGCGTTTTCTCGTGAATTGGGTAAGGTCCGCCAGTACCTCCTTGGGC
AGCTCGGCACCACCAGGACCCTTGTAGAGGGAAGCCGGATCATCGTGCTT
CAGCTTGGACTTGCGCAACGAATTGCTCACAAGATTGGCCGATTTGGCAT
CCAGGGGATCGGGCATGCCGGAAACATCCTTCGATTGATTGCCCGCTATA
AAGGACAGGTCACTCGTGCTGGAGGCTTGCGATACATTTCTGCTGAGTGA
ATCAATGCTGCCACTTAAACCGTTCCTGACACTACTGTCCACCGCCTGCA
AATCCCCGGAACTCTCGTTTGGCTGCAGGGNTCTCGGCACATCCGAAACG
GTCTCCCA
BS10291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4357-PA | 3516 | Ncc69-RA | 2579..3516 | 954..17 | 4646 | 99.7 | Minus |
| CG4357-PB | 3516 | Ncc69-RB | 2579..3516 | 954..17 | 4646 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 4762 | CG4357-RG | 3754..4698 | 958..14 | 4684 | 99.7 | Minus |
| Ncc69-RA | 3936 | CG4357-RA | 2928..3872 | 958..14 | 4684 | 99.7 | Minus |
| Ncc69-RE | 4044 | CG4357-RE | 3167..3980 | 827..14 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12368710..12368958 | 14..262 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 12369049..12369286 | 262..499 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 12369937..12370167 | 498..728 | 1155 | 100 | Plus |
| 3L | 28110227 | 3L | 12371761..12371893 | 826..958 | 624 | 97.7 | Plus |
| 3L | 28110227 | 3L | 12370235..12370334 | 728..827 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:00:01 has no hits.
BS10291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:28 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-PB | 2576..3516 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:47 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4357-PB | 2576..3516 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:49:59 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RA | 2929..3879 | 7..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:01 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RA | 2929..3879 | 7..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:01 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12368703..12368957 | 7..261 | 98 | <- | Plus |
| 3L | 12369049..12369284 | 262..497 | 100 | <- | Plus |
| 3L | 12369937..12370166 | 498..727 | 100 | <- | Plus |
| 3L | 12370235..12370332 | 728..825 | 100 | <- | Plus |
| 3L | 12371761..12371892 | 826..957 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:49:59 Download gff for
BS10291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12361803..12362057 | 7..261 | 98 | <- | Plus |
| arm_3L | 12362149..12362384 | 262..497 | 100 | <- | Plus |
| arm_3L | 12363037..12363266 | 498..727 | 100 | <- | Plus |
| arm_3L | 12363335..12363432 | 728..825 | 100 | <- | Plus |
| arm_3L | 12364861..12364992 | 826..957 | 97 | | Plus |
BS10291.5prime Sequence
920 bp (824 high quality bases) assembled on 2006-04-19
> BS10291.5prime
GAAGTTATCAGTCGACATGTCGGACACAATCTCTTTCGAGTTGGGCTCAG
CTGCCGACCGGCCCCCCAACAGGTTTCAAGTGAACCCGGTCAACGGCAAC
AGTCGTAAGTCGCAGGGAGCGGATGGCCCAGGATCCGGATCAGGAGCGGG
AGCTGGAGCAGGAGCAGGAGCTGGGGAGGATGGGCCGCACGAGGTCTACC
GCCGACTAACAAACGCCGAGGGCGAGCTGCTCGAGGACGACACATTCGAT
GCGACACAAATGCTCAACCAACGACAGCCCAGGCAGCAGAGGCAATCAAT
CAAAAGCAGTTTCCGCGACAAGGATAAACCGTCAAGGTTCAAGGATCTGC
AAACGACGACCCGCTTCCAGGTGGATCCCCAAAATGAGGAGTCCGACGAG
TCCAATGACTCGCAGGAGGAGCGCGAGCTGCTGGACAACGAGTACGACAC
AAAATATGGTAAAAGTTTCCGGCATTTCACCAGAGAGGCGTTACCCCGCC
TGGACAACTACCGCAACATGATGTCCATCCAGGCGGCCTACCGTCCAACG
CTCGACGAGCTGCATAACGCCACGCTGGTGGGCAAGAACACGCACAGCTT
GACACGTAATCAGGACCCGGAGTCGGGCATCCTGAATGGGGTCCTGAAAT
TCGGTTGGATCAAAGGTGTGCTCGTCCGCTGCCTGCTGAACATCTGGGGC
GTGATGCTGTTCCTCCGGCTCAGCTGGGTGGTGGGTCAGGCGGGCGTCAT
CGAGGGATTCGTATTAATTCTGACAACGACTGCTGTCACGACCATCACGG
CCTTGTCGATGTCGGCGATAAGCACTAATGGTGTCATCAAAGGGGGTGGC
ACATACTATATGATATCCCGGTCTCTGGGGCCGGAGTTTGGTGGATCCAT
CGGTTTGATATTCTCCCTGG
BS10291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4357-PA | 3516 | Ncc69-RA | 1..904 | 17..920 | 4520 | 100 | Plus |
| CG4357-PB | 3516 | Ncc69-RB | 1..904 | 17..920 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 4762 | CG4357-RG | 1180..2083 | 17..920 | 4520 | 100 | Plus |
| Ncc69-RF | 4051 | CG4357-RF | 409..1312 | 17..920 | 4520 | 100 | Plus |
| Ncc69-RE | 4044 | CG4357-RE | 354..1257 | 17..920 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12379138..12379413 | 292..17 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 12374285..12374548 | 848..585 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 12376436..12376618 | 472..290 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 12376001..12376116 | 586..471 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 12374136..12374211 | 920..845 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5493354..5493408 | 734..680 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:16 has no hits.
BS10291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:29 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-PB | 1..904 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:48 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4357-PB | 1..904 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:12 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1257 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:47 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RE | 343..1257 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:47 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12374136..12374210 | 846..920 | 100 | <- | Minus |
| 3L | 12374288..12374546 | 587..845 | 100 | <- | Minus |
| 3L | 12376001..12376115 | 472..586 | 100 | <- | Minus |
| 3L | 12376437..12376616 | 292..471 | 100 | <- | Minus |
| 3L | 12379139..12379424 | 9..291 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:12 Download gff for
BS10291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12367236..12367310 | 846..920 | 100 | <- | Minus |
| arm_3L | 12367388..12367646 | 587..845 | 100 | <- | Minus |
| arm_3L | 12369101..12369215 | 472..586 | 100 | <- | Minus |
| arm_3L | 12369537..12369716 | 292..471 | 100 | <- | Minus |
| arm_3L | 12372239..12372524 | 9..291 | 98 | | Minus |
BS10291.complete Sequence
3548 bp assembled on 2007-11-30
GenBank Submission: FJ636629
> BS10291.complete
GAAGTTATCAGTCGACATGTCGGACACAATCTCTTTCGAGTTGGGCTCAG
CTGCCGACCGGCCCCCCAACAGGTTTCAAGTGAACCCGGTCAACGGCAAC
AGTCGTAAGTCGCAGGGAGCGGATGGCCCAGGATCCGGATCAGGAGCGGG
AGCTGGAGCAGGAGCAGGAGCTGGGGAGGATGGGCCGCACGAGGTCTACC
GCCGACTAACAAACGCCGAGGGCGAGCTGCTCGAGGACGACACATTCGAT
GCGACACAAATGCTCAACCAACGACAGCCCAGGCAGCAGAGGCAATCAAT
CAAAAGCAGTTTCCGCGACAAGGATAAACCGTCAAGGTTCAAGGATCTGC
AAACGACGACCCGCTTCCAGGTGGATCCCCAAAATGAGGAGTCCGACGAG
TCCAATGACTCGCAGGAGGAGCGCGAGCTGCTGGACAACGAGTACGACAC
AAAATATGGTAAAAGTTTCCGGCATTTCACCAGAGAGGCGTTACCCCGCC
TGGACAACTACCGCAACATGATGTCCATCCAGGCGGCCTACCGTCCAACG
CTCGACGAGCTGCATAACGCCACGCTGGTGGGCAAGAACACGCACAGCTT
GACACGTAATCAGGACCCGGAGTCGGGCATCCTGAATGGGGTCCTGAAAT
TCGGTTGGATCAAAGGTGTGCTCGTCCGCTGCCTGCTGAACATCTGGGGC
GTGATGCTGTTCCTCCGGCTCAGCTGGGTGGTGGGTCAGGCGGGCGTCAT
CGAGGGATTCGTATTAATTCTGACAACGACTGCTGTCACGACCATCACGG
CCTTGTCGATGTCGGCGATAAGCACTAATGGTGTCATCAAAGGGGGTGGC
ACATACTATATGATATCCCGGTCTCTGGGGCCGGAGTTTGGTGGATCCAT
CGGTTTGATATTCTCCCTGGCAAATGCGGTGGCGTGTGCCATGTATGTGG
TCGGCTTCTGCGAGTCTATGTTGGCCATGATGACGACCTTTGGCTGGGAG
ATCATAGATGGTGGCGTCCAGGATGTGCGCATCATTGGTTGCATTACCAT
ACTGCTGCTCCTCATCATTGTGGTCGTCGGCATGGAGTGGGAGGCCAAGG
CGCAAATCGGACTGCTCATCATCCTGTTGGTGGCCATTGGAGACTTTGTT
ATTGGCAGCTTTATCGGACCGAAGAGCGATGCGGAAATGGCCAAGGGATT
TTTGGGATATAATGCCACTTTGTTTAAGAACAACCTTTTCGCGGACTATC
GGCCGGAAAAGGGAGGCATTCAACACGATTTTTTCTCAGTGTTTGCTATA
TTCTTCCCTGCCGCAACGGGCATTTTAGCTGGAGCCAATATTTCGGGCGA
TCTGAAGGACCCACAAAAATCCATTCCAAAAGGCACGATCCTGGCCATCG
TTATCACCACCGGAACCTATTTGATTATGGTACTCCAGTGTGGTGCCACA
GTGGCTCGTGATGCCACGGGAAATCTTTCAGATGTCGTAAACGGCACCTT
TGCATTCCTCGACTGTCAGCCTGGTGAATGCAATTACGGCTTGCAAAACT
CATTTCAAGTAATTGAGTTGGTATCCGCGTTTGGCCCTCTGATTTACGCC
GGTTGCTATGCTGCCACGTTATCCTCGGCATTGGCCAGTTTGGTGTCTGC
CCCGAAGGTCTTCCAGGCTCTGTGCAAGGATGAGCTGTATCCGAAGATTG
TGTGGTTTGCCAAAGGTTATGGCAAGAATAATGAGCCAGTTCGTGGCTAT
GTGTTAACTTTCATCATCGCCTGTGCCTTCATTTTGATTGGCGAACTGAA
CCTGATTGCCCCGCTCATTTCGAACTTCTTCCTGGCCGCCTACATGTTGA
TCAACTTCAGTACCTTCCATGCCAGTCTGGCCAAGCCAGTGGGCTGGCGA
CCGACCTTTAAGTATTACAATATGTGGCTGAGCCTGTTGGGCGCCATCCT
CTGTGTGGCCGTCATGTTCCTCATCTCGTGGGCCACAGCGCTCATCACCT
TTGCCGCCGTGCTGGCTCTGTACTTAATTGTGGCCTACCGGAAACCGGAT
GTCAACTGGGGCTCCACCACCCAGGCTCAGACGTACAAGAACGCCCTGAT
GTCGGTGCAGCAGCTGAACAATGTGGAGGAGCACGTGAAGAACTACCGGC
CACAGATCCTGGTTCTTTCCGGTTTGCCCAACACACGGCCGGTGCTCGTC
GACTTGGCTTACATGCTAACCAAGAATTTATCCCTGCTCGTCTGTGGTCA
CGTTCTGAAAGGTTCCAGCTCGCAGAAGTACCGGACATATCTGCAGGAAA
GGGCGGGCAATTGGTTCCGGAAGCATCGCGTTAAGGGCTTCTATGCCCTG
GTGGATGGTGAGGACTTTGAGTCCGGCACTCGGGCTCTGATGCAAGCAAC
TGGTATTGGAAAACTTAAGCCGAACATCATCCTGATGGGCTACAAGACTG
ACTGGCAGACGTGCGATCACAAGGAGCTGGATCAGTACTTCAATGTGATG
CACAAGGCACTGGACATGTACCTATCCGTGGCCATTTTGCGTGTGCCCCA
GGGTCTGGACTGTTCGCAGGTGCTGGGCTCGCAGGATGGTTGGAAGACCG
TTTCGGATGTGCCGAGAACCCTGCAGCCAAACGAGAGTTCCGGGGATCTG
CAGGCGGTGGACAGTAGTGTCAGGAACGGTTTAAGTGGCAGCATTGATTC
ACTCAGCAGAAATGTATCGCAAGCCTCCAGCACGAGTGACCTGTCCTTTA
TAGCGGGCAATCAATCGAAGGATGTTTCCGGCATGCCCGATCCCCTGGAT
GCCAAATCGGCCAATCTTGTGAGCAATTCGTTGCGCAAGTCCAAGCTGAA
GCACGATGATCCGGCTTCCCTCTACAAGGGTCCTGGTGGTGCCGAGCTGC
CCAAGGAGGTACTGGCGGACCTTACCCAATTCACGAGAAAACGCAGCCAC
GCCGTCATCGATGTCTGGTGGTTGTACGATGACGGAGGACTCACTCTCCT
CTTGCCCTACATCATCAGTACGCGGCGCACCTGGCAATCCTGCAAATTGA
GAGTTTACGCGCTGGCTAACAAAAATTCGGAATTGGAGTTCGAGCAGCGC
TCAATGGCCAGTTTGCTGTCGAAATTCCGGATCGATTACTCGGATTTAAC
ACTGATTCCGGATATAACGAAGAAGCCCCAGGAAACATCCACGCAGTTCT
TTAATGAGCTGATTAAGGACTTTGTTGTTACCGAAAAGGATGGCGAGAAT
GGCACCAGCAGCAGGGCAACTCTCAACGAGGACGATGCCCTCATAACCGA
CGATGATCTGTTGGCGGTGCAGGACAAGACGAATCGGTATTTGCGGCTGC
GGGAGTACCTGCGGGAGCAGTCGACCAAGTCGGACCTCGTGGTGATGACC
CTGCCGATGCCACGGAAGAACATCGTCTCCGCACCCCTCTACATGGCCTG
GCTGGAGAGCCTGAGTCGGGACATGCCGCCCTTCCTTTTTGTGCGCGGCA
ATCAGACGAGTGTGCTGACCTTCTACTCGTAGAAGCTTTCTAGACCAT
BS10291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 3516 | CG4357-PG | 1..3516 | 17..3532 | 17580 | 100 | Plus |
| Ncc69-RA | 3516 | CG4357-PA | 1..3516 | 17..3532 | 17580 | 100 | Plus |
| Ncc69-RF | 3576 | CG4357-PF | 1..2707 | 17..2723 | 13535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-RG | 4762 | CG4357-RG | 1180..4698 | 17..3535 | 17595 | 100 | Plus |
| Ncc69-RA | 3936 | CG4357-RA | 354..3872 | 17..3535 | 17595 | 100 | Plus |
| Ncc69-RF | 4051 | CG4357-RF | 409..3115 | 17..2723 | 13535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12371761..12372573 | 2723..1911 | 4065 | 100 | Minus |
| 3L | 28110227 | 3L | 12379138..12379413 | 292..17 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 12374285..12374548 | 848..585 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 12373956..12374211 | 1100..845 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 12368710..12368958 | 3535..3287 | 1245 | 100 | Minus |
| 3L | 28110227 | 3L | 12369049..12369286 | 3287..3050 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 12369937..12370167 | 3051..2821 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 12376436..12376618 | 472..290 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 12373353..12373522 | 1525..1356 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 12373139..12373283 | 1667..1523 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 12373577..12373721 | 1358..1214 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 12372634..12372769 | 1912..1777 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 12373785..12373901 | 1214..1098 | 585 | 100 | Minus |
| 3L | 28110227 | 3L | 12376001..12376116 | 586..471 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 12372970..12373082 | 1776..1664 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 12370235..12370334 | 2821..2722 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:29:57 has no hits.
BS10291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:49 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RB | 1..3516 | 17..3532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:52 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RB | 412..3927 | 17..3532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:00 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RA | 354..3869 | 17..3532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:06 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RB | 412..3927 | 17..3532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:30 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ncc69-RA | 354..3869 | 17..3532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:30 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12374288..12374546 | 587..845 | 100 | <- | Minus |
| 3L | 12376001..12376115 | 472..586 | 100 | <- | Minus |
| 3L | 12376437..12376616 | 292..471 | 100 | <- | Minus |
| 3L | 12379139..12379413 | 17..291 | 100 | | Minus |
| 3L | 12373578..12373720 | 1215..1357 | 100 | <- | Minus |
| 3L | 12373785..12373899 | 1100..1214 | 100 | <- | Minus |
| 3L | 12373957..12374210 | 846..1099 | 100 | <- | Minus |
| 3L | 12371761..12372571 | 1913..2723 | 100 | <- | Minus |
| 3L | 12372634..12372769 | 1777..1912 | 100 | <- | Minus |
| 3L | 12372970..12373079 | 1667..1776 | 100 | <- | Minus |
| 3L | 12373140..12373282 | 1524..1666 | 100 | <- | Minus |
| 3L | 12368713..12368957 | 3288..3532 | 100 | <- | Minus |
| 3L | 12369049..12369284 | 3052..3287 | 100 | <- | Minus |
| 3L | 12369937..12370166 | 2822..3051 | 100 | <- | Minus |
| 3L | 12370235..12370332 | 2724..2821 | 100 | <- | Minus |
| 3L | 12373355..12373520 | 1358..1523 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:00 Download gff for
BS10291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12369537..12369716 | 292..471 | 100 | <- | Minus |
| arm_3L | 12367057..12367310 | 846..1099 | 100 | <- | Minus |
| arm_3L | 12367388..12367646 | 587..845 | 100 | <- | Minus |
| arm_3L | 12369101..12369215 | 472..586 | 100 | <- | Minus |
| arm_3L | 12361813..12362057 | 3288..3532 | 100 | <- | Minus |
| arm_3L | 12362149..12362384 | 3052..3287 | 100 | <- | Minus |
| arm_3L | 12363037..12363266 | 2822..3051 | 100 | <- | Minus |
| arm_3L | 12363335..12363432 | 2724..2821 | 100 | <- | Minus |
| arm_3L | 12364861..12365671 | 1913..2723 | 100 | <- | Minus |
| arm_3L | 12365734..12365869 | 1777..1912 | 100 | <- | Minus |
| arm_3L | 12366070..12366179 | 1667..1776 | 100 | <- | Minus |
| arm_3L | 12366240..12366382 | 1524..1666 | 100 | <- | Minus |
| arm_3L | 12366455..12366620 | 1358..1523 | 100 | <- | Minus |
| arm_3L | 12366678..12366820 | 1215..1357 | 100 | <- | Minus |
| arm_3L | 12366885..12366999 | 1100..1214 | 100 | <- | Minus |
| arm_3L | 12372239..12372513 | 17..291 | 100 | | Minus |
BS10291.pep Sequence
Translation from 16 to 3531
> BS10291.pep
MSDTISFELGSAADRPPNRFQVNPVNGNSRKSQGADGPGSGSGAGAGAGA
GAGEDGPHEVYRRLTNAEGELLEDDTFDATQMLNQRQPRQQRQSIKSSFR
DKDKPSRFKDLQTTTRFQVDPQNEESDESNDSQEERELLDNEYDTKYGKS
FRHFTREALPRLDNYRNMMSIQAAYRPTLDELHNATLVGKNTHSLTRNQD
PESGILNGVLKFGWIKGVLVRCLLNIWGVMLFLRLSWVVGQAGVIEGFVL
ILTTTAVTTITALSMSAISTNGVIKGGGTYYMISRSLGPEFGGSIGLIFS
LANAVACAMYVVGFCESMLAMMTTFGWEIIDGGVQDVRIIGCITILLLLI
IVVVGMEWEAKAQIGLLIILLVAIGDFVIGSFIGPKSDAEMAKGFLGYNA
TLFKNNLFADYRPEKGGIQHDFFSVFAIFFPAATGILAGANISGDLKDPQ
KSIPKGTILAIVITTGTYLIMVLQCGATVARDATGNLSDVVNGTFAFLDC
QPGECNYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQ
ALCKDELYPKIVWFAKGYGKNNEPVRGYVLTFIIACAFILIGELNLIAPL
ISNFFLAAYMLINFSTFHASLAKPVGWRPTFKYYNMWLSLLGAILCVAVM
FLISWATALITFAAVLALYLIVAYRKPDVNWGSTTQAQTYKNALMSVQQL
NNVEEHVKNYRPQILVLSGLPNTRPVLVDLAYMLTKNLSLLVCGHVLKGS
SSQKYRTYLQERAGNWFRKHRVKGFYALVDGEDFESGTRALMQATGIGKL
KPNIILMGYKTDWQTCDHKELDQYFNVMHKALDMYLSVAILRVPQGLDCS
QVLGSQDGWKTVSDVPRTLQPNESSGDLQAVDSSVRNGLSGSIDSLSRNV
SQASSTSDLSFIAGNQSKDVSGMPDPLDAKSANLVSNSLRKSKLKHDDPA
SLYKGPGGAELPKEVLADLTQFTRKRSHAVIDVWWLYDDGGLTLLLPYII
STRRTWQSCKLRVYALANKNSELEFEQRSMASLLSKFRIDYSDLTLIPDI
TKKPQETSTQFFNELIKDFVVTEKDGENGTSSRATLNEDDALITDDDLLA
VQDKTNRYLRLREYLREQSTKSDLVVMTLPMPRKNIVSAPLYMAWLESLS
RDMPPFLFVRGNQTSVLTFYS*
BS10291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ncc69-PG | 1171 | CG4357-PG | 1..1171 | 1..1171 | 6033 | 100 | Plus |
| Ncc69-PA | 1171 | CG4357-PA | 1..1171 | 1..1171 | 6033 | 100 | Plus |
| Ncc69-PF | 1191 | CG4357-PF | 1..1191 | 1..1171 | 5999 | 98.2 | Plus |
| Ncc69-PD | 1191 | CG4357-PD | 1..1191 | 1..1171 | 5999 | 98.2 | Plus |
| Ncc69-PC | 1191 | CG4357-PC | 1..1191 | 1..1171 | 5999 | 98.2 | Plus |
