Clone Sequence Records
BS10292.complete Sequence
1979 bp assembled on 2009-12-07
GenBank Submission: KX801012
> BS10292.complete
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACAGCAAAAAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACC
CCCACGCCGTATGCCACCGCCCTGCTGCCCATGAACCTTGAACAGACCGC
AGAGACGATTTACTCGAAGCCAGAGTCGATCTGTCCCTCGAGGATTTCCT
ACTACGCCTCCTCGCAACTGACCCAGCCTTGCAGCCTATCGACGCCGAAG
AGCATCCGAAGCAACGGCAATGGCAACTGCACCAGCGGAAGTGGCAGCCT
AAGCCTTTTTGGAGGCATCCCCACCGGCAGCACCATCACCATGGCCAGTC
ACGGGGAGAAGGGTAACCAACGGCTGCGACGGATAACCAGCGTCCAGCCC
GGTGCCCTCAGCTACGAGGAGCTGGTCAAGGAGGGCACCTTCGGCCGGAT
TTACGCCGGCAAGCTGGGCGAGTCATGCGAGGCGCTCGTAAAGACCGTCA
TCGATGGCGCATCGCTCACCCAGGTGGCCTGCCTGCTGCAGGACGCCTCC
CTGCTGATCGGCGTCAGTCATCAGCACATCCTGGCACCGCTGTTGGCCAA
CACGGAGCTGCCGGGTCCACCGGAGATTGCCTATCCCCATCCGTCCAAGG
GCAATCTCAAGATGTACTTGCAAAAGTCGCGGGAATCGAGCACAGCATTG
AGTACGCGCCAACTGGTTGAGTTTGGGCTGCACATCACCAAGGGATTGGC
CTATCTGCACTCACTGGGAATCGTTCACAAGGACATTGCTACACGCAATT
GCTACCTTGACGAAGAGTCCTATGTGAAGATCTGCGATAGCGCCCTCTCT
CGCGATCTCTTCCCAGACGACTACGACTGTCTGGGCGACAATGAGAATCG
CCCGCTGAAGTGGCTGTCGCTGGAATCCCTCCAGAAGCGGGTCTATGCCA
CCCAGGGCGACGTGTGGGCCTTGGGCGTGACCTACTGGGAGCTGGTCACT
CTGGCGCAGATGCCGCACGAGGAGGTGGATATATTCGAGCTTACCAATTA
CTTGGCTGCCGGCTTCCGGCTGGAGCAGCCAGTCAACTGCCCAGATGAAT
TCTTTACGGTTATGAACTGCTGCTGGCACTGCGAGGCCAAACAGCGACCT
ACGCCCTCACAGTTGCTATCGTATCTGCAGGACTTCCATGCGGATCTGGG
CATGTACATCTAAAAGCTTTCTAGACCAT
BS10292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drl-2-RC | 1947 | CG3915-PC | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Drl-2-RB | 1947 | CG3915-PB | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drl-2-RC | 6020 | CG3915-RC | 1209..3156 | 16..1963 | 9740 | 100 | Plus |
Drl-2-RB | 4688 | CG3915-RB | 1209..3156 | 16..1963 | 9740 | 100 | Plus |
CG13325-RB | 3610 | CG13325-RB | 753..874 | 16..137 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13058972..13059414 | 1416..974 | 2215 | 100 | Minus |
2R | 25286936 | 2R | 13058317..13058613 | 1851..1555 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 13067809..13068047 | 504..266 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 13067573..13067743 | 672..502 | 855 | 100 | Minus |
2R | 25286936 | 2R | 13067352..13067511 | 832..673 | 800 | 100 | Minus |
2R | 25286936 | 2R | 13067132..13067277 | 976..831 | 730 | 100 | Minus |
2R | 25286936 | 2R | 13058731..13058871 | 1554..1414 | 705 | 100 | Minus |
2R | 25286936 | 2R | 13068109..13068237 | 265..137 | 645 | 100 | Minus |
2R | 25286936 | 2R | 13072577..13072699 | 138..16 | 615 | 100 | Minus |
2R | 25286936 | 2R | 13111521..13111643 | 16..138 | 615 | 100 | Plus |
2R | 25286936 | 2R | 13058110..13058221 | 1963..1852 | 560 | 100 | Minus |
2R | 25286936 | 2R | 13116412..13116500 | 888..976 | 400 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:27 has no hits.
BS10292.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:30 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1209..3153 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:54 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1210..3154 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:29 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1209..3153 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:31 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1210..3154 | 17..1961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:31 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13067810..13068047 | 266..503 | 100 | <- | Minus |
2R | 13068109..13068236 | 138..265 | 100 | <- | Minus |
2R | 13072578..13072698 | 17..137 | 100 | | Minus |
2R | 13067573..13067741 | 504..672 | 100 | <- | Minus |
2R | 13058112..13058221 | 1852..1961 | 100 | <- | Minus |
2R | 13058317..13058613 | 1555..1851 | 100 | <- | Minus |
2R | 13058731..13058871 | 1414..1554 | 100 | <- | Minus |
2R | 13058975..13059411 | 977..1413 | 100 | <- | Minus |
2R | 13067132..13067277 | 831..976 | 100 | <- | Minus |
2R | 13067354..13067511 | 673..830 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:54 Download gff for
BS10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8946236..8946376 | 1414..1554 | 100 | <- | Minus |
arm_2R | 8945822..8946118 | 1555..1851 | 100 | <- | Minus |
arm_2R | 8945617..8945726 | 1852..1961 | 100 | <- | Minus |
arm_2R | 8946480..8946916 | 977..1413 | 100 | <- | Minus |
arm_2R | 8954637..8954782 | 831..976 | 100 | <- | Minus |
arm_2R | 8954859..8955016 | 673..830 | 100 | <- | Minus |
arm_2R | 8955078..8955246 | 504..672 | 100 | <- | Minus |
arm_2R | 8955315..8955552 | 266..503 | 100 | <- | Minus |
arm_2R | 8955614..8955741 | 138..265 | 100 | <- | Minus |
arm_2R | 8960083..8960203 | 17..137 | 100 | | Minus |
BS10292.3prime Sequence
960 bp (826 high quality bases) assembled on 2006-04-19
> BS10292.3prime
ATGGTCTAGAAAGCTTTTAGATGTACATGCCCAGATCCGCATGGAAGTCC
TGCAGATACGATAGCAACTGTGAGGGCGTAGGTCGCTGTTTGGCCTCGCA
GTGCCAGCAGCAGTTCATAACCGTAAAGAATTCATCTGGGCAGTTGACTG
GCTGCTCCAGCCGGAAGCCGGCAGCCAAGTAATTGGTAAGCTCGAATATA
TCCACCTCCTCGTGCGGCATCTGCGCCAGAGTGACCAGCTCCCAGTAGGT
CACGCCCAAGGCCCACACGTCGCCCTGGGTGGCATAGACCCGCTTCTGGA
GGGATTCCAGCGACAGCCACTTCAGCGGGCGATTCTCATTGTCGCCCAGA
CAGTCGTAGTCGTCTGGGAAGAGATCGCGAGAGAGGGCGCTATCGCAGAT
CTTCACATAGGACTCTTCGTCAAGGTAGCAATTGCGTGTAGCAATGTCCT
TGTGAACGATTCCCAGTGAGTGCAGATAGGCCAATCCCTTGGTGATGTGC
AGCCCAAACTCAACCAGTTGGCGCGTACTCAATGCTGTGCTCGATTCCCG
CGACTTTTGCAAGTACATCTTGAGATTGCCCTTGGACGGATGGGGATAGG
CAATCTCCGGTGGACCCGGCAGCTCCGTGTTGGCCAACAGCGGTGCCAGG
ATGTGCTGATGACTGACGCCGATCAGCAGGGAGGCGTCCTGCAGCAGGCA
GGCCACCTGGGTGAGCGATGCGCCATCGATGACGGTCTTTACGAGCGCCT
CGCATGACTCGCCCAGCTTGCCGGCGTAAATCCGGCCGAAGGTGCCCTCC
TTGACCAGCTCCTCGTAGCTGAGGGCACCGGGCTGGACGCTGGTTATCCG
TCGCAGCCGTTGGTTACCCTTCTCCCCGTGACTGGCCATGGTGATGGTGC
TGCCGGTGGGGATGCCTCCAAAAAGCTTAGGCTGCCACTCCGCTGGTGCA
GTTGCCATTG
BS10292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3915-PB | 1947 | Drl-2-RB | 1039..1947 | 925..17 | 4545 | 100 | Minus |
CG3915-PA | 873 | Drl-2-RA | 1..873 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drl-2-RC | 6020 | CG3915-RC | 2211..3156 | 960..17 | 4680 | 99.8 | Minus |
Drl-2-RB | 4688 | CG3915-RB | 2211..3156 | 960..17 | 4680 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13058972..13059370 | 564..960 | 1895 | 99.5 | Plus |
2R | 25286936 | 2R | 13058317..13058613 | 129..425 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 13058731..13058871 | 426..566 | 705 | 100 | Plus |
2R | 25286936 | 2R | 13058110..13058221 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:18:03 has no hits.
BS10292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:30 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-PB | 1002..1947 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:50 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3915-PB | 1002..1947 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:25:23 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 2211..3158 | 13..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:52:46 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 2211..3158 | 13..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:52:46 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13058108..13058221 | 13..128 | 98 | <- | Plus |
2R | 13058317..13058613 | 129..425 | 100 | <- | Plus |
2R | 13058731..13058871 | 426..566 | 100 | <- | Plus |
2R | 13058975..13059370 | 567..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:25:23 Download gff for
BS10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8945613..8945726 | 13..128 | 98 | <- | Plus |
arm_2R | 8945822..8946118 | 129..425 | 100 | <- | Plus |
arm_2R | 8946236..8946376 | 426..566 | 100 | <- | Plus |
arm_2R | 8946480..8946875 | 567..960 | 99 | | Plus |
BS10292.5prime Sequence
803 bp (802 high quality bases) assembled on 2006-04-19
> BS10292.5prime
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACA
BS10292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3915-PB | 1947 | Drl-2-RB | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drl-2-RC | 6020 | CG3915-RC | 1209..1996 | 16..803 | 3940 | 100 | Plus |
Drl-2-RB | 4688 | CG3915-RB | 1209..1996 | 16..803 | 3940 | 100 | Plus |
CG13325-RB | 3610 | CG13325-RB | 753..874 | 16..137 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13067809..13068047 | 504..266 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 13067573..13067743 | 672..502 | 855 | 100 | Minus |
2R | 25286936 | 2R | 13067381..13067511 | 803..673 | 655 | 100 | Minus |
2R | 25286936 | 2R | 13068109..13068237 | 265..137 | 645 | 100 | Minus |
2R | 25286936 | 2R | 13072577..13072699 | 138..16 | 615 | 100 | Minus |
2R | 25286936 | 2R | 13111521..13111643 | 16..138 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:07:49 has no hits.
BS10292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:31 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-PB | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:51 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3915-PB | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:36 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1204..1995 | 12..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:39 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drl-2-RB | 1204..1995 | 12..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:39 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13068109..13068236 | 138..265 | 100 | <- | Minus |
2R | 13072578..13072704 | 12..137 | 98 | | Minus |
2R | 13067382..13067511 | 673..802 | 100 | <- | Minus |
2R | 13067573..13067741 | 504..672 | 100 | <- | Minus |
2R | 13067810..13068047 | 266..503 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:36 Download gff for
BS10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8954887..8955016 | 673..802 | 100 | <- | Minus |
arm_2R | 8955078..8955246 | 504..672 | 100 | <- | Minus |
arm_2R | 8955315..8955552 | 266..503 | 100 | <- | Minus |
arm_2R | 8955614..8955741 | 138..265 | 100 | <- | Minus |
arm_2R | 8960083..8960209 | 12..137 | 98 | | Minus |
BS10292.pep Sequence
Translation from 16 to 1962
> BS10292.pep
MELLPLKSPLPILLLCLTISTSVSGYLNIFISHHEVMKLMGLEADLFYVH
EGAINTYAMHFTVPVPADVHELEFSWQSLIAYPLPYAISIEYNNDQEALG
TPTLSIPHKGLVPQEIESFLVYLPCTGNASLQMPVNVNMVVRAPPRFNDT
RLHFKRNKICAKGISPEPNQSPAPAHAPSQGPALLSAAACALGLVLAVGL
VASMMYVRARKQLRQDSLHTSFTTAAYGSHQNVFIRLDPLGRPPSATGSY
ATIASLNKYPADSKKSCSIFDRFRSSPTPTPYATALLPMNLEQTAETIYS
KPESICPSRISYYASSQLTQPCSLSTPKSIRSNGNGNCTSGSGSLSLFGG
IPTGSTITMASHGEKGNQRLRRITSVQPGALSYEELVKEGTFGRIYAGKL
GESCEALVKTVIDGASLTQVACLLQDASLLIGVSHQHILAPLLANTELPG
PPEIAYPHPSKGNLKMYLQKSRESSTALSTRQLVEFGLHITKGLAYLHSL
GIVHKDIATRNCYLDEESYVKICDSALSRDLFPDDYDCLGDNENRPLKWL
SLESLQKRVYATQGDVWALGVTYWELVTLAQMPHEEVDIFELTNYLAAGF
RLEQPVNCPDEFFTVMNCCWHCEAKQRPTPSQLLSYLQDFHADLGMYI*
BS10292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drl-2-PC | 648 | CG3915-PC | 1..648 | 1..648 | 3395 | 100 | Plus |
Drl-2-PB | 648 | CG3915-PB | 1..648 | 1..648 | 3395 | 100 | Plus |
dnt-PB | 584 | CG17559-PB | 299..584 | 362..648 | 639 | 45.8 | Plus |
dnt-PA | 584 | CG17559-PA | 299..584 | 362..648 | 639 | 45.8 | Plus |
drl-PA | 610 | CG17348-PA | 310..610 | 352..648 | 615 | 43.9 | Plus |
dnt-PB | 584 | CG17559-PB | 28..187 | 8..167 | 305 | 39.1 | Plus |
dnt-PA | 584 | CG17559-PA | 28..187 | 8..167 | 305 | 39.1 | Plus |