Clone BS10292 Report

Search the DGRC for BS10292

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:102
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptDrl-2-RB
Protein status:BS10292.pep: full length peptide match
Sequenced Size:1979

Clone Sequence Records

BS10292.complete Sequence

1979 bp assembled on 2009-12-07

GenBank Submission: KX801012

> BS10292.complete
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACAGCAAAAAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACC
CCCACGCCGTATGCCACCGCCCTGCTGCCCATGAACCTTGAACAGACCGC
AGAGACGATTTACTCGAAGCCAGAGTCGATCTGTCCCTCGAGGATTTCCT
ACTACGCCTCCTCGCAACTGACCCAGCCTTGCAGCCTATCGACGCCGAAG
AGCATCCGAAGCAACGGCAATGGCAACTGCACCAGCGGAAGTGGCAGCCT
AAGCCTTTTTGGAGGCATCCCCACCGGCAGCACCATCACCATGGCCAGTC
ACGGGGAGAAGGGTAACCAACGGCTGCGACGGATAACCAGCGTCCAGCCC
GGTGCCCTCAGCTACGAGGAGCTGGTCAAGGAGGGCACCTTCGGCCGGAT
TTACGCCGGCAAGCTGGGCGAGTCATGCGAGGCGCTCGTAAAGACCGTCA
TCGATGGCGCATCGCTCACCCAGGTGGCCTGCCTGCTGCAGGACGCCTCC
CTGCTGATCGGCGTCAGTCATCAGCACATCCTGGCACCGCTGTTGGCCAA
CACGGAGCTGCCGGGTCCACCGGAGATTGCCTATCCCCATCCGTCCAAGG
GCAATCTCAAGATGTACTTGCAAAAGTCGCGGGAATCGAGCACAGCATTG
AGTACGCGCCAACTGGTTGAGTTTGGGCTGCACATCACCAAGGGATTGGC
CTATCTGCACTCACTGGGAATCGTTCACAAGGACATTGCTACACGCAATT
GCTACCTTGACGAAGAGTCCTATGTGAAGATCTGCGATAGCGCCCTCTCT
CGCGATCTCTTCCCAGACGACTACGACTGTCTGGGCGACAATGAGAATCG
CCCGCTGAAGTGGCTGTCGCTGGAATCCCTCCAGAAGCGGGTCTATGCCA
CCCAGGGCGACGTGTGGGCCTTGGGCGTGACCTACTGGGAGCTGGTCACT
CTGGCGCAGATGCCGCACGAGGAGGTGGATATATTCGAGCTTACCAATTA
CTTGGCTGCCGGCTTCCGGCTGGAGCAGCCAGTCAACTGCCCAGATGAAT
TCTTTACGGTTATGAACTGCTGCTGGCACTGCGAGGCCAAACAGCGACCT
ACGCCCTCACAGTTGCTATCGTATCTGCAGGACTTCCATGCGGATCTGGG
CATGTACATCTAAAAGCTTTCTAGACCAT

BS10292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 1947 CG3915-PC 1..1947 17..1963 9735 100 Plus
Drl-2-RB 1947 CG3915-PB 1..1947 17..1963 9735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 1209..3156 16..1963 9740 100 Plus
Drl-2-RB 4688 CG3915-RB 1209..3156 16..1963 9740 100 Plus
CG13325-RB 3610 CG13325-RB 753..874 16..137 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13058972..13059414 1416..974 2215 100 Minus
2R 25286936 2R 13058317..13058613 1851..1555 1485 100 Minus
2R 25286936 2R 13067809..13068047 504..266 1195 100 Minus
2R 25286936 2R 13067573..13067743 672..502 855 100 Minus
2R 25286936 2R 13067352..13067511 832..673 800 100 Minus
2R 25286936 2R 13067132..13067277 976..831 730 100 Minus
2R 25286936 2R 13058731..13058871 1554..1414 705 100 Minus
2R 25286936 2R 13068109..13068237 265..137 645 100 Minus
2R 25286936 2R 13072577..13072699 138..16 615 100 Minus
2R 25286936 2R 13111521..13111643 16..138 615 100 Plus
2R 25286936 2R 13058110..13058221 1963..1852 560 100 Minus
2R 25286936 2R 13116412..13116500 888..976 400 96.6 Plus
Blast to na_te.dros performed on 2014-11-28 02:15:27 has no hits.

BS10292.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:30 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1209..3153 17..1961 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:54 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1210..3154 17..1961 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:29 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1209..3153 17..1961 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:31 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1210..3154 17..1961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:31 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13067810..13068047 266..503 100 <- Minus
2R 13068109..13068236 138..265 100 <- Minus
2R 13072578..13072698 17..137 100   Minus
2R 13067573..13067741 504..672 100 <- Minus
2R 13058112..13058221 1852..1961 100 <- Minus
2R 13058317..13058613 1555..1851 100 <- Minus
2R 13058731..13058871 1414..1554 100 <- Minus
2R 13058975..13059411 977..1413 100 <- Minus
2R 13067132..13067277 831..976 100 <- Minus
2R 13067354..13067511 673..830 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:54 Download gff for BS10292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8946236..8946376 1414..1554 100 <- Minus
arm_2R 8945822..8946118 1555..1851 100 <- Minus
arm_2R 8945617..8945726 1852..1961 100 <- Minus
arm_2R 8946480..8946916 977..1413 100 <- Minus
arm_2R 8954637..8954782 831..976 100 <- Minus
arm_2R 8954859..8955016 673..830 100 <- Minus
arm_2R 8955078..8955246 504..672 100 <- Minus
arm_2R 8955315..8955552 266..503 100 <- Minus
arm_2R 8955614..8955741 138..265 100 <- Minus
arm_2R 8960083..8960203 17..137 100   Minus

BS10292.3prime Sequence

960 bp (826 high quality bases) assembled on 2006-04-19

> BS10292.3prime
ATGGTCTAGAAAGCTTTTAGATGTACATGCCCAGATCCGCATGGAAGTCC
TGCAGATACGATAGCAACTGTGAGGGCGTAGGTCGCTGTTTGGCCTCGCA
GTGCCAGCAGCAGTTCATAACCGTAAAGAATTCATCTGGGCAGTTGACTG
GCTGCTCCAGCCGGAAGCCGGCAGCCAAGTAATTGGTAAGCTCGAATATA
TCCACCTCCTCGTGCGGCATCTGCGCCAGAGTGACCAGCTCCCAGTAGGT
CACGCCCAAGGCCCACACGTCGCCCTGGGTGGCATAGACCCGCTTCTGGA
GGGATTCCAGCGACAGCCACTTCAGCGGGCGATTCTCATTGTCGCCCAGA
CAGTCGTAGTCGTCTGGGAAGAGATCGCGAGAGAGGGCGCTATCGCAGAT
CTTCACATAGGACTCTTCGTCAAGGTAGCAATTGCGTGTAGCAATGTCCT
TGTGAACGATTCCCAGTGAGTGCAGATAGGCCAATCCCTTGGTGATGTGC
AGCCCAAACTCAACCAGTTGGCGCGTACTCAATGCTGTGCTCGATTCCCG
CGACTTTTGCAAGTACATCTTGAGATTGCCCTTGGACGGATGGGGATAGG
CAATCTCCGGTGGACCCGGCAGCTCCGTGTTGGCCAACAGCGGTGCCAGG
ATGTGCTGATGACTGACGCCGATCAGCAGGGAGGCGTCCTGCAGCAGGCA
GGCCACCTGGGTGAGCGATGCGCCATCGATGACGGTCTTTACGAGCGCCT
CGCATGACTCGCCCAGCTTGCCGGCGTAAATCCGGCCGAAGGTGCCCTCC
TTGACCAGCTCCTCGTAGCTGAGGGCACCGGGCTGGACGCTGGTTATCCG
TCGCAGCCGTTGGTTACCCTTCTCCCCGTGACTGGCCATGGTGATGGTGC
TGCCGGTGGGGATGCCTCCAAAAAGCTTAGGCTGCCACTCCGCTGGTGCA
GTTGCCATTG

BS10292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3915-PB 1947 Drl-2-RB 1039..1947 925..17 4545 100 Minus
CG3915-PA 873 Drl-2-RA 1..873 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 2211..3156 960..17 4680 99.8 Minus
Drl-2-RB 4688 CG3915-RB 2211..3156 960..17 4680 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13058972..13059370 564..960 1895 99.5 Plus
2R 25286936 2R 13058317..13058613 129..425 1485 100 Plus
2R 25286936 2R 13058731..13058871 426..566 705 100 Plus
2R 25286936 2R 13058110..13058221 17..128 560 100 Plus
Blast to na_te.dros performed on 2015-02-03 16:18:03 has no hits.

BS10292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:30 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-PB 1002..1947 17..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:50 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3915-PB 1002..1947 17..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:25:23 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 2211..3158 13..960 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:52:46 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 2211..3158 13..960 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:52:46 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13058108..13058221 13..128 98 <- Plus
2R 13058317..13058613 129..425 100 <- Plus
2R 13058731..13058871 426..566 100 <- Plus
2R 13058975..13059370 567..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:25:23 Download gff for BS10292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8945613..8945726 13..128 98 <- Plus
arm_2R 8945822..8946118 129..425 100 <- Plus
arm_2R 8946236..8946376 426..566 100 <- Plus
arm_2R 8946480..8946875 567..960 99   Plus

BS10292.5prime Sequence

803 bp (802 high quality bases) assembled on 2006-04-19

> BS10292.5prime
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACA

BS10292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3915-PB 1947 Drl-2-RB 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 1209..1996 16..803 3940 100 Plus
Drl-2-RB 4688 CG3915-RB 1209..1996 16..803 3940 100 Plus
CG13325-RB 3610 CG13325-RB 753..874 16..137 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13067809..13068047 504..266 1195 100 Minus
2R 25286936 2R 13067573..13067743 672..502 855 100 Minus
2R 25286936 2R 13067381..13067511 803..673 655 100 Minus
2R 25286936 2R 13068109..13068237 265..137 645 100 Minus
2R 25286936 2R 13072577..13072699 138..16 615 100 Minus
2R 25286936 2R 13111521..13111643 16..138 615 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:07:49 has no hits.

BS10292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:31 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-PB 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:51 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3915-PB 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:36 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1204..1995 12..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:39 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1204..1995 12..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:39 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13068109..13068236 138..265 100 <- Minus
2R 13072578..13072704 12..137 98   Minus
2R 13067382..13067511 673..802 100 <- Minus
2R 13067573..13067741 504..672 100 <- Minus
2R 13067810..13068047 266..503 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:36 Download gff for BS10292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8954887..8955016 673..802 100 <- Minus
arm_2R 8955078..8955246 504..672 100 <- Minus
arm_2R 8955315..8955552 266..503 100 <- Minus
arm_2R 8955614..8955741 138..265 100 <- Minus
arm_2R 8960083..8960209 12..137 98   Minus

BS10292.pep Sequence

Translation from 16 to 1962

> BS10292.pep
MELLPLKSPLPILLLCLTISTSVSGYLNIFISHHEVMKLMGLEADLFYVH
EGAINTYAMHFTVPVPADVHELEFSWQSLIAYPLPYAISIEYNNDQEALG
TPTLSIPHKGLVPQEIESFLVYLPCTGNASLQMPVNVNMVVRAPPRFNDT
RLHFKRNKICAKGISPEPNQSPAPAHAPSQGPALLSAAACALGLVLAVGL
VASMMYVRARKQLRQDSLHTSFTTAAYGSHQNVFIRLDPLGRPPSATGSY
ATIASLNKYPADSKKSCSIFDRFRSSPTPTPYATALLPMNLEQTAETIYS
KPESICPSRISYYASSQLTQPCSLSTPKSIRSNGNGNCTSGSGSLSLFGG
IPTGSTITMASHGEKGNQRLRRITSVQPGALSYEELVKEGTFGRIYAGKL
GESCEALVKTVIDGASLTQVACLLQDASLLIGVSHQHILAPLLANTELPG
PPEIAYPHPSKGNLKMYLQKSRESSTALSTRQLVEFGLHITKGLAYLHSL
GIVHKDIATRNCYLDEESYVKICDSALSRDLFPDDYDCLGDNENRPLKWL
SLESLQKRVYATQGDVWALGVTYWELVTLAQMPHEEVDIFELTNYLAAGF
RLEQPVNCPDEFFTVMNCCWHCEAKQRPTPSQLLSYLQDFHADLGMYI*

BS10292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-PC 648 CG3915-PC 1..648 1..648 3395 100 Plus
Drl-2-PB 648 CG3915-PB 1..648 1..648 3395 100 Plus
dnt-PB 584 CG17559-PB 299..584 362..648 639 45.8 Plus
dnt-PA 584 CG17559-PA 299..584 362..648 639 45.8 Plus
drl-PA 610 CG17348-PA 310..610 352..648 615 43.9 Plus
dnt-PB 584 CG17559-PB 28..187 8..167 305 39.1 Plus
dnt-PA 584 CG17559-PA 28..187 8..167 305 39.1 Plus