Clone Sequence Records
BS10295.3prime Sequence
939 bp (773 high quality bases) assembled on 2006-04-19
> BS10295.3prime
ATGGTCTAGAAAGCTTTTAGTTACCCTCGGGCTTTGGCAGATTCGTATCA
TAGGCACGTATAATGATAGACTGCGGCACAGCTCCGCCCTCCTCCTGGGA
AAACGCATAGCCATGCGATAGCTCGAGATCCGTTTCGACTCTCGTGTTGG
CACGACGGGTAAAGACATTACGTAGCAGCCGGGCCGTTTCCGTGAATGAA
GATCGCGGTTCGTTCATCACTTCGGAGATGTCGCTGCGTCGGATCTCCGT
TTCGCGAACAGCCTCCGTCAGTGTCTTAAACACGGTATTATGTACGAGTT
TGCAGATCACATCGATCAGCAGCGTGGTAATGGGCACCAGCATCAAGCAG
AAATAGAAAACTGGCGTCGATAGCAACTGTATGTCCATGCCGCGGAAGTT
GCTCGCGAACTTGAACATTGGCCACACATGGCTATAAATCAGCAGAAATC
CGAACCACAGGACAATTGAGCCCCAAATGGCCAGATGGGTAAGCCAGGTC
CACGAATTGGTGATGAGTCCAGCCTTCAGGCAAACGGTAACAATCACGTA
AGTATAAACGAGGTTGCCCATCAATAGGTAATCACTGGTCTTGCCATCGC
TCCAGATCACTTCCTTTGTGTATGCTGCCAGCGGTAACCAGAAAAGGAAC
ACCGAGTGCAGTAGCGCATTGAATATCCAGATCCAAAACACCTTCACATT
GAAGAGCTTCGCATTCTGTGATGTTTTATAAAGCATCGGGTACCGGATCA
TCGTTTCCGCCGTGCAGAATTTCTCAAAGAGTCCCATCGCAAACGGCGGC
ATGGCCGTGAATAGCACATTGTACAAGCCAATTGTCCAGCGTTCAAACAG
GATCTGGCCCGACCAGCCGGAGTAGACGGCGAACCACAGTTCGATAACAT
ACAGACACACGTTCTTGTAGAAGCTGTACAGGATCAGCT
BS10295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17034-PD | 3453 | CG17034-RD | 2531..3453 | 939..17 | 4615 | 100 | Minus |
| CG17034-PA | 3708 | CG17034-RA | 2531..3272 | 939..198 | 3710 | 100 | Minus |
| CG17034-PC | 4083 | CG17034-RC | 2906..3647 | 939..198 | 3710 | 100 | Minus |
| CG17034-PB | 4083 | CG17034-RB | 2906..3647 | 939..198 | 3710 | 100 | Minus |
| CG17034-PA | 3708 | CG17034-RA | 3528..3708 | 197..17 | 905 | 100 | Minus |
| CG17034-PC | 4083 | CG17034-RC | 3903..4083 | 197..17 | 905 | 100 | Minus |
| CG17034-PB | 4083 | CG17034-RB | 3903..4083 | 197..17 | 905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RO | 4787 | CG42321-RO | 3325..4248 | 939..16 | 4620 | 100 | Minus |
| CG42321-RN | 4553 | CG42321-RN | 3091..4014 | 939..16 | 4620 | 100 | Minus |
| CG42321-RM | 4261 | CG42321-RM | 2799..3722 | 939..16 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13419464..13419852 | 551..939 | 1945 | 100 | Plus |
| 2R | 25286936 | 2R | 13419147..13419400 | 297..550 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 13415517..13415615 | 16..114 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 13418987..13419085 | 198..296 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 13415875..13415957 | 115..197 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:27:36 has no hits.
BS10295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:34 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17034-PD | 2531..3453 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:55 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17034-PD | 2531..3453 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:49 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RM | 2799..3722 | 16..939 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:50 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RM | 2799..3722 | 16..939 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:50 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13415875..13415957 | 115..197 | 100 | <- | Plus |
| 2R | 13418987..13419085 | 198..296 | 100 | <- | Plus |
| 2R | 13419147..13419400 | 297..550 | 100 | <- | Plus |
| 2R | 13419464..13419852 | 551..939 | 100 | | Plus |
| 2R | 13415517..13415615 | 16..114 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:49 Download gff for
BS10295.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9303022..9303120 | 16..114 | 100 | <- | Plus |
| arm_2R | 9303380..9303462 | 115..197 | 100 | <- | Plus |
| arm_2R | 9306492..9306590 | 198..296 | 100 | <- | Plus |
| arm_2R | 9306652..9306905 | 297..550 | 100 | <- | Plus |
| arm_2R | 9306969..9307357 | 551..939 | 100 | | Plus |
BS10295.5prime Sequence
896 bp (816 high quality bases) assembled on 2006-04-19
> BS10295.5prime
GAAGTTATCAGTCGACATGCCTTCCATTTTCCGCTTTCGTCTGCCTTTTC
GCCGCAGCGAGTTACCCGAAACCGGTCTCCTGAATACCTATGACGAGGAC
TTCACCTCGTCCGCTGGGTACGATGCAGATGATGGGGAGAGGCGTATCAT
AAACCTAAATGGGCCACAGCCCACTAAGTACGGTAATAATCGCATAACGA
CGGCAAAATATAGTTTCATCAGCTTTTTGCCCGCGTTCCTGTTCGAGCAA
TTCCGGCGTTACTCCAACTGCTTTTTCCTGCTAATTGCCATACTGCAACA
AATCCCGGAGGTGTCGCCGACGGGTCGTTACACCACGCTAGTGCCACTGA
TGTTCATCCTTTCGGTGAGCGCCATTAAGGAGATAATCGAGGACATTAAA
CGACATCGGGCGGATAATGAGATCAATCACCGATCGATAGAGCGCCTGGA
TAGTGGCTCGTGGTGCACAGTTCGCTGGTCGGAGTTGACGGTGGGCGATA
TCATCAAAGTGGGAATCAATACCTTCTTCCCCGCCGATCTGATTCTGCTG
TCGTCCAGTGAACCGCAGGCCATGTGCTTCATAGAGACGGCCAATTTGGA
TGGTGAGACCAACCTGAAGATTCGACAGGCCCTCCCAGCCACCGCTGAAC
TGCTGGAGACGAAGGATCTGCAACGATTGGAGGGCAGGATCGAGTGCGAG
CTGCCCAACCGGCATTTATACGAGTTTAACGGAGTGCTCAGGGAAACTGG
AAAGCCACCCGCTGCTTTGGGCAATGATCAGGTGCTCCAACGTGGCGCCA
TTCTTCGGAACACGGCATGGGTGTTCGGGATCGTGGTCTACTCCGGGCAA
GAGACGAAGCTGATGAAGAACTCTACCTCGGCGCCATTGAAGCGCT
BS10295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17034-PA | 3708 | CG17034-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
| CG17034-PD | 3453 | CG17034-RD | 1..880 | 17..896 | 4400 | 100 | Plus |
| CG17034-PC | 4083 | CG17034-RC | 449..1255 | 90..896 | 4035 | 100 | Plus |
| CG17034-PB | 4083 | CG17034-RB | 449..1255 | 90..896 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RM | 4261 | CG42321-RM | 269..1148 | 17..896 | 4400 | 100 | Plus |
| CG42321-RL | 4552 | CG42321-RL | 373..1252 | 17..896 | 4400 | 100 | Plus |
| CG42321-RK | 4658 | CG42321-RK | 373..1252 | 17..896 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13421839..13422039 | 756..556 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 397..212 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 558..398 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13421568..13421707 | 896..757 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422725 | 213..90 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13438607..13438679 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:41:43 has no hits.
BS10295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:35 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17034-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:54:57 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17034-PD | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:26 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1252 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:07 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1252 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:07 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13421568..13421707 | 757..896 | 100 | <- | Minus |
| 2R | 13421839..13422036 | 559..756 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 398..558 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 214..397 | 100 | <- | Minus |
| 2R | 13422602..13422725 | 90..213 | 100 | <- | Minus |
| 2R | 13438607..13438688 | 9..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:26 Download gff for
BS10295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9326112..9326193 | 9..89 | 95 | | Minus |
| arm_2R | 9309073..9309212 | 757..896 | 100 | <- | Minus |
| arm_2R | 9309344..9309541 | 559..756 | 100 | <- | Minus |
| arm_2R | 9309604..9309764 | 398..558 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 214..397 | 100 | <- | Minus |
| arm_2R | 9310107..9310230 | 90..213 | 100 | <- | Minus |
BS10295.complete Sequence
3485 bp assembled on 2008-08-14
GenBank Submission: FJ636630
> BS10295.complete
GAAGTTATCAGTCGACATGCCTTCCATTTTCCGCTTTCGTCTGCCTTTTC
GCCGCAGCGAGTTACCCGAAACCGGTCTCCTGAATACCTATGACGAGGAC
TTCACCTCGTCCGCTGGGTACGATGCAGATGATGGGGAGAGGCGTATCAT
AAACCTAAATGGGCCACAGCCCACTAAGTACGGTAATAATCGCATAACGA
CGGCAAAATATAGTTTCATCAGCTTTTTGCCCGCGTTCCTGTTCGAGCAA
TTCCGGCGTTACTCCAACTGCTTTTTCCTGCTAATTGCCATACTGCAACA
AATCCCGGAGGTGTCGCCGACGGGTCGTTACACCACGCTAGTGCCACTGA
TGTTCATCCTTTCGGTGAGCGCCATTAAGGAGATAATCGAGGACATTAAA
CGACATCGGGCGGATAATGAGATCAATCACCGATCGATAGAGCGCCTGGA
TAGTGGCTCGTGGTGCACAGTTCGCTGGTCGGAGTTGACGGTGGGCGATA
TCATCAAAGTGGGAATCAATACCTTCTTCCCCGCCGATCTGATTCTGCTG
TCGTCCAGTGAACCGCAGGCCATGTGCTTCATAGAGACGGCCAATTTGGA
TGGTGAGACCAACCTGAAGATTCGACAGGCCCTCCCAGCCACCGCTGAAC
TGCTGGAGACGAAGGATCTGCAACGATTGGAGGGCAGGATCGAGTGCGAG
CTGCCCAACCGGCATTTATACGAGTTTAACGGAGTGCTCAGGGAAACTGG
AAAGCCACCCGCTGCTTTGGGCAATGATCAGGTGCTCCAACGTGGCGCCA
TTCTTCGGAACACGGCATGGGTGTTCGGGATCGTGGTCTACTCCGGGCAA
GAGACGAAGCTGATGAAGAACTCTACCTCGGCGCCATTGAAGCGCTCAAC
CGTAGACAAGCTGACCAACACCCAGATCCTCATGCTCTTCATGATCCTCA
TCTCATTGTGCATCATCAGCGGCTTGTGCAATCTGTTCTGGACAAGGGAA
CATTCGGAAACGGACTGGTACCTGGGCCTAACCGACTTCAAGACCAAGAG
CCTTGGCTACAACCTGCTGACCTTCTTCATTCTGTACAACAACCTGATCC
CCATCTCGCTACAGGTGACGCTTGAGCTTGTGCGTTTCCTGCAGGCCATT
TTCATAAACTACGACATTGAGATGTATCACGAGGAATCAAACACGCCCGC
CATGGCGCGCACCTCGAACTTGAACGAAGAGCTGGGCATGGTCAAGTATA
TATTCTCGGACAAGACAGGCACCCTCACGCAGAACGTGATGGAGTTCAAG
AAATGCTCCATCGCCGGATACGTATACACAGCTGAGCGAACGCCGGAGGA
ATCTCAGCTAGTGCAGAATATCCTCGGTCGTCATGAGACGTCCGCCGTGA
TAGAGGAGTTCCTGGAACTCCTATCGGTGTGCCATACGGTAATACCCGAG
CGCAAGGAAAACGGCAACATGATCTACCACGCTGCCAGTCCGGATGAGCG
TGCTCTGGTGGAAGGTGCCCAGAAATTTGGCTACATCTTCGATACACGAA
CGCCAAAGTATGTGGAGATCAATGCGCTAGGCGTGCGAAAGCGATACGAA
GTTCTGAATGTCCTGGAGTTCACCTCGTCGCGTAAGCGTATGTCGTTGAT
TGTTCGCACGCCGGAAAATAAGATCAAGCTATTCTGCAAGGGAGCGGACA
CGGTGATATACGAACGTCTGGCTCCTCAGGGTCAAGCCTTCCGGGAACAG
ACGCTGCGTCATTTGGAGGAGTTTGCATCGGATGGATTGCGGACCCTCTG
TTTGGCAGTTGCTGACATTCGGCCGGATGTTTACCAAGAATGGAGCCAGA
CTTTCGACAAGGCATCGGTGGCTCTTCAGAATCGCGAGAGCAAGTTGGAG
GACGCGGCCAATCTGATTGAGAACAATCTTCGTCTACTTGGCGCCACGGC
AATCGAAGATAGACTGCAGGATGGTGTGCCGGAAACGATTGCCTCTCTGC
TGGACGCCGGCATCTATATCTGGGTCCTTACCGGTGACAAGCAGGAGACG
GCCATTAATATTGGCTACTCCTGCCGTCTGATTAGCCACTCCATGGATAT
CATAATACTAAACGAGGAGAGCCTCGATGCCACCCGCGAAGTCATTCATC
GCCATTATGGAGAATTCAAGAGTTCGTCGGCGAAGGACGCCAATGTGGCA
CTAGTCATCGATGGTACTACGCTGAAGTACGCCCTTAGCTGCGACCTGCG
CAATGATTTCCAAGACTTGTGCATTCTGTGTCGGGTGGTCATCTGCTGCA
GAGTGTCTCCAATGCAAAAGGCTGAGGTGGTCGAGATGGTCACCCAGAGC
ACGAATGCAGTGACCCTAGCCATTGGCGATGGAGCCAACGACGTGGCAAT
GATCCAAAAAGCGAACGTGGGAATCGGCATATCTGGAGTTGAGGGTCTCC
AGGCGGCATGCGCATCGGACTACTCGATCGCCCAGTTTCGCTATTTGCAG
CGCCTACTCTTGGTCCATGGTGCTTGGAACTACGCTAGGATCTCCAAGCT
GATCCTGTACAGCTTCTACAAGAACGTGTGTCTGTATGTTATCGAACTGT
GGTTCGCCGTCTACTCCGGCTGGTCGGGCCAGATCCTGTTTGAACGCTGG
ACAATTGGCTTGTACAATGTGCTATTCACGGCCATGCCGCCGTTTGCGAT
GGGACTCTTTGAGAAATTCTGCACGGCGGAAACGATGATCCGGTACCCGA
TGCTTTATAAAACATCACAGAATGCGAAGCTCTTCAATGTGAAGGTGTTT
TGGATCTGGATATTCAATGCGCTACTGCACTCGGTGTTCCTTTTCTGGTT
ACCGCTGGCAGCATACACAAAGGAAGTGATCTGGAGCGATGGCAAGACCA
GTGATTACCTATTGATGGGCAACCTCGTTTATACTTACGTGATTGTTACC
GTTTGCCTGAAGGCTGGACTCATCACCAATTCGTGGACCTGGCTTACCCA
TCTGGCCATTTGGGGCTCAATTGTCCTGTGGTTCGGATTTCTGCTGATTT
ATAGCCATGTGTGGCCAATGTTCAAGTTCGCGAGCAACTTCCGCGGCATG
GACATACAGTTGCTATCGACGCCAGTTTTCTATTTCTGCTTGATGCTGGT
GCCCATTACCACGCTGCTGATCGATGTGATCTGCAAACTCGTACATAATA
CCGTGTTTAAGACACTGACGGAGGCTGTTCGCGAAACGGAGATCCGACGC
AGCGACATCTCCGAAGTGATGAACGAACCGCGATCTTCATTCACGGAAAC
GGCCCGGCTGCTACGTAATGTCTTTACCCGTCGTGCCAACACGAGAGTCG
AAACGGATCTCGAGCTATCGCATGGCTATGCGTTTTCCCAGGAGGAGGGC
GGAGCTGTGCCGCAGTCTATCATTATACGTGCCTATGATACGAATCTGCC
AAAGCCCGAGGGTAACTAAAAGCTTTCTAGACCAT
BS10295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RM | 3453 | CG42321-PM | 1..3453 | 17..3469 | 17265 | 100 | Plus |
| CG42321-RE | 3453 | CG42321-PE | 1..3453 | 17..3469 | 17265 | 100 | Plus |
| CG42321-RO | 3828 | CG42321-PO | 449..3828 | 90..3469 | 16900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RM | 4261 | CG42321-RM | 269..3722 | 17..3470 | 17270 | 100 | Plus |
| CG42321-RE | 4365 | CG42321-RE | 373..3826 | 17..3470 | 17270 | 100 | Plus |
| CG42321-RO | 4787 | CG42321-RO | 868..4248 | 90..3470 | 16905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13420335..13421707 | 2129..757 | 6865 | 100 | Minus |
| 2R | 25286936 | 2R | 13419464..13420270 | 2935..2129 | 4035 | 100 | Minus |
| 2R | 25286936 | 2R | 13419147..13419400 | 3189..2936 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 13421839..13422039 | 756..556 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 397..212 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 558..398 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422725 | 213..90 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13415517..13415615 | 3470..3372 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 13418987..13419085 | 3288..3190 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 13415875..13415957 | 3371..3289 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 13438607..13438679 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:53 has no hits.
BS10295.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:28 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RM | 254..3716 | 9..3470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:24 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RE | 373..3823 | 17..3467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:47 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RM | 263..3713 | 17..3467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:47 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RE | 373..3823 | 17..3467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:47 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422320..13422503 | 214..397 | 100 | <- | Minus |
| 2R | 13422602..13422725 | 90..213 | 100 | <- | Minus |
| 2R | 13438607..13438679 | 17..89 | 100 | | Minus |
| 2R | 13415520..13415615 | 3372..3467 | 100 | <- | Minus |
| 2R | 13415875..13415957 | 3289..3371 | 100 | <- | Minus |
| 2R | 13418987..13419085 | 3190..3288 | 100 | <- | Minus |
| 2R | 13419147..13419400 | 2936..3189 | 100 | <- | Minus |
| 2R | 13419464..13420270 | 2129..2935 | 100 | <- | Minus |
| 2R | 13420336..13421707 | 757..2128 | 100 | <- | Minus |
| 2R | 13421839..13422036 | 559..756 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 398..558 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:24 Download gff for
BS10295.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9306652..9306905 | 2936..3189 | 100 | <- | Minus |
| arm_2R | 9303025..9303120 | 3372..3467 | 100 | <- | Minus |
| arm_2R | 9303380..9303462 | 3289..3371 | 100 | <- | Minus |
| arm_2R | 9306492..9306590 | 3190..3288 | 100 | <- | Minus |
| arm_2R | 9306969..9307775 | 2129..2935 | 100 | <- | Minus |
| arm_2R | 9307841..9309212 | 757..2128 | 100 | <- | Minus |
| arm_2R | 9309344..9309541 | 559..756 | 100 | <- | Minus |
| arm_2R | 9309604..9309764 | 398..558 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 214..397 | 100 | <- | Minus |
| arm_2R | 9310107..9310230 | 90..213 | 100 | <- | Minus |
| arm_2R | 9326112..9326184 | 17..89 | 100 | | Minus |
BS10295.pep Sequence
Translation from 16 to 3468
> BS10295.pep
MPSIFRFRLPFRRSELPETGLLNTYDEDFTSSAGYDADDGERRIINLNGP
QPTKYGNNRITTAKYSFISFLPAFLFEQFRRYSNCFFLLIAILQQIPEVS
PTGRYTTLVPLMFILSVSAIKEIIEDIKRHRADNEINHRSIERLDSGSWC
TVRWSELTVGDIIKVGINTFFPADLILLSSSEPQAMCFIETANLDGETNL
KIRQALPATAELLETKDLQRLEGRIECELPNRHLYEFNGVLRETGKPPAA
LGNDQVLQRGAILRNTAWVFGIVVYSGQETKLMKNSTSAPLKRSTVDKLT
NTQILMLFMILISLCIISGLCNLFWTREHSETDWYLGLTDFKTKSLGYNL
LTFFILYNNLIPISLQVTLELVRFLQAIFINYDIEMYHEESNTPAMARTS
NLNEELGMVKYIFSDKTGTLTQNVMEFKKCSIAGYVYTAERTPEESQLVQ
NILGRHETSAVIEEFLELLSVCHTVIPERKENGNMIYHAASPDERALVEG
AQKFGYIFDTRTPKYVEINALGVRKRYEVLNVLEFTSSRKRMSLIVRTPE
NKIKLFCKGADTVIYERLAPQGQAFREQTLRHLEEFASDGLRTLCLAVAD
IRPDVYQEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDRL
QDGVPETIASLLDAGIYIWVLTGDKQETAINIGYSCRLISHSMDIIILNE
ESLDATREVIHRHYGEFKSSSAKDANVALVIDGTTLKYALSCDLRNDFQD
LCILCRVVICCRVSPMQKAEVVEMVTQSTNAVTLAIGDGANDVAMIQKAN
VGIGISGVEGLQAACASDYSIAQFRYLQRLLLVHGAWNYARISKLILYSF
YKNVCLYVIELWFAVYSGWSGQILFERWTIGLYNVLFTAMPPFAMGLFEK
FCTAETMIRYPMLYKTSQNAKLFNVKVFWIWIFNALLHSVFLFWLPLAAY
TKEVIWSDGKTSDYLLMGNLVYTYVIVTVCLKAGLITNSWTWLTHLAIWG
SIVLWFGFLLIYSHVWPMFKFASNFRGMDIQLLSTPVFYFCLMLVPITTL
LIDVICKLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSSFTETARLLR
NVFTRRANTRVETDLELSHGYAFSQEEGGAVPQSIIIRAYDTNLPKPEGN
*
BS10295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-PM | 1150 | CG42321-PM | 1..1150 | 1..1150 | 5952 | 100 | Plus |
| CG42321-PE | 1150 | CG17034-PD | 1..1150 | 1..1150 | 5952 | 100 | Plus |
| CG42321-PO | 1275 | CG42321-PO | 151..1275 | 26..1150 | 5821 | 100 | Plus |
| CG42321-PN | 1275 | CG42321-PN | 151..1275 | 26..1150 | 5821 | 100 | Plus |
| CG42321-PG | 1324 | CG42321-PG | 200..1324 | 26..1150 | 5821 | 100 | Plus |
