Clone BS10308 Report

Search the DGRC for BS10308

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG9346-RA
Protein status:BS10308.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10308.3prime Sequence

935 bp (861 high quality bases) assembled on 2006-04-19

> BS10308.3prime
ATGGTCTAGAAAGCTTCTAGTGCCTATGTTTGTGCTTGTGCTTGTCGCTG
CGATGTCTCGGCGGCGATGGCTCTTCTCTGCGAGAGGAGCGCGAGGAGGT
TGGAGAACTGCGTGATCGCGACGATCCGGAGGCAGGAGTTTCGTAGCGGG
AGCTGCGAGACGACCGCTCTGTATACCGCTTCGGTGAACTGGACGGACTA
CGCGACCGATTGCGTTTCGAGGATTTGGATGAGCGCGAGGTTTCGGGTGA
ATAGTCACGTCGTTTGGATTCGCCACCAGAGAACGGCGAGTGGGATCGTT
TGCGGGAACTGCTTCTGAACAGCGCTGGACTCTCACTCACCTTGGAGCTC
TTGGATTTTATGTGCATGTAGCTGAGCGGGGAGTCTACAGTTGCCTCAGA
TCGCGAGTCCTGTTTAAGTAATCGCTTCCGGAATTGTTCCACTTGTTCGG
GGACACTCCAACCTGGTTCCAGGCGGCGCTTTCCGGACTCCAGTTCGTCC
TGGTACTGAATTGCTTTCGACTCAATGTCTCTTAACTTCTGACGCATCTC
GTCGGTGTACTTTTGCGGATTGTCTTCTCCACTGTCGTCGTCCGAGCTAA
AGAACTTCGGTGGATCTGGCGGATCGAGAGTGTCCCATTTGCTGGTGGTA
ATCGCCTGCGCTTCTACTTGCTGGGGATCAACTGTCTCCCACTTTGAGGG
TATGAAGCCAGGCAACTTAGCCGTAGATTTGGTTTCTTTTTCCAACGGTA
CACCGTCGAGATCATCATCCAATGGTATGCCATCGATTTCATCGAGGTAT
TCATCTTTCTTAGGTGTGTCACGCTTTGGAGTACCAGCATCTGCATCAGG
TATGGCTCGCTTCAGGGCGCTCTTAAGCAAAGCAGCTCCATCTAGTGGCA
CTCCGTCTAGATCCTCGTCGTCCTTTTCCTCTCCC

BS10308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-PA 2874 CG9346-RA 1957..2874 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-RA 2998 CG9346-RA 2033..2951 934..16 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21015183..21015581 414..16 1995 100 Minus
2R 25286936 2R 21014762..21015128 775..409 1820 99.7 Minus
2R 25286936 2R 21014543..21014705 934..772 800 99.4 Minus
Blast to na_te.dros performed on 2015-02-03 16:23:48 has no hits.

BS10308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:54 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-PA 1956..2874 17..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:21 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-PA 1956..2874 17..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:23 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 2032..2957 8..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:42 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 2032..2957 8..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:42 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21014542..21014705 772..935 98 -> Minus
2R 21014766..21015127 410..771 100 -> Minus
2R 21015188..21015587 8..409 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:23 Download gff for BS10308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16902047..16902210 772..935 98 -> Minus
arm_2R 16902271..16902632 410..771 100 -> Minus
arm_2R 16902693..16903092 8..409 99   Minus

BS10308.5prime Sequence

908 bp (770 high quality bases) assembled on 2006-04-19

> BS10308.5prime
GAAGTTATCAGTCGACATGAGTAAACAAGGGAATAAAAGCAAGGATTCGG
CTGCCGCATCCGCCACTTTAAAACGGATAAGCGAAAAGAAGTTGGAGGCC
TTCACGGTGGGCACCTTCTCCAAACGACAATTGTCCAAAAAAGAGCTCGA
GGACCAGAAAAAAAAGGAGGATGCAGCTGCTGCGGCACATGCCTTCAAAG
AGTTCGTAGAGACTTTCCAAGATGCACCCACCCCCTCCTCGAAAGTTTGG
GTCAAAGCCGGCACCTATGATGCAGGATCCCGGCGGGAGGACAAGTCGGA
GAAGGGCAAGCTATACAAGCCGGTCTCCAAGCTGATGGAAAAGAGCTCCT
CGGACAAGGTCGAGGATTACGCCAAGACCCTGGCCTCGGATCTCAAAAAG
GACTCGGGTCCATTGAAGAAGAAAAACCAGGAGAAGAAAAAGAGCAACTT
GGAGCTGTTCAAGGAGGAATTGAGACAGATTCAAGAGGAGCGTGAGGAGC
GCCACAAGTACAAGCACATGGCCTCAAGCCATTCCGCACCAGCACAGCAA
CCGGCTGCATCAGCTGCTCCTGTGCCCAGCAGCAGTGTCTCCACCACCTC
CCAGAACTCAAGCAGCTCAAAGGAGTCTGGTTCGTTTGACACGGGCGATC
CAAATACCACAAACCTGTACCTGGGCAACCTGAACCCCAAGATATCCGAG
CAGCAGCTTATGGAAATCTTTGGGCGATACGGTCCCTTGGCCAGTATCAA
GATCATGTGGCCCCGCTCCGAAGAGGAGAAGCAAAGGGGACGCAATTGCG
GCTTTGTGGCCTACATGAGCCGCAAGGATGCGGAAAGGGCCCTAAAGACA
CTGAACGGGCGCTACATCATGGGCTACGAGATGCGTCTAGGATGGGGAAA
GACTGTGC

BS10308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-PA 2874 CG9346-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-RA 2998 CG9346-RA 77..968 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21012679..21013098 478..897 2100 100 Plus
2R 25286936 2R 21012335..21012622 191..478 1440 100 Plus
2R 25286936 2R 21012162..21012279 74..191 590 100 Plus
2R 25286936 2R 21012046..21012102 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:39:05 has no hits.

BS10308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:35:55 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:22 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:08 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 77..968 17..908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:30 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 77..968 17..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:30 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21012046..21012102 17..73 100 -> Plus
2R 21012162..21012278 74..190 100 -> Plus
2R 21012335..21012621 191..477 100 -> Plus
2R 21012679..21013104 478..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:08 Download gff for BS10308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16899551..16899607 17..73 100 -> Plus
arm_2R 16899667..16899783 74..190 100 -> Plus
arm_2R 16899840..16900126 191..477 100 -> Plus
arm_2R 16900184..16900609 478..904 99   Plus

BS10308.complete Sequence

2906 bp assembled on 2007-11-30

GenBank Submission: FJ636631

> BS10308.complete
GAAGTTATCAGTCGACATGAGTAAACAAGGGAATAAAAGCAAGGATTCGG
CTGCCGCATCCGCCACTTTAAAACGGATAAGCGAAAAGAAGTTGGAGGCC
TTCACGGTGGGCACCTTCTCCAAACGACAATTGTCCAAAAAAGAGCTCGA
GGACCAGAAAAAAAAGGAGGATGCAGCTGCTGCGGCACATGCCTTCAAAG
AGTTCGTAGAGACTTTCCAAGATGCACCCACCCCCTCCTCGAAAGTTTGG
GTCAAAGCCGGCACCTATGATGCAGGATCCCGGCGGGAGGACAAGTCGGA
GAAGGGCAAGCTATACAAGCCGGTCTCCAAGCTGATGGAAAAGAGCTCCT
CGGACAAGGTCGAGGATTACGCCAAGACCCTGGCCTCGGATCTCAAAAAG
GACTCGGGTCCATTGAAGAAGAAAAACCAGGAGAAGAAAAAGAGCAACTT
GGAGCTGTTCAAGGAGGAATTGAGACAGATTCAAGAGGAGCGTGAGGAGC
GCCACAAGTACAAGCACATGGCCTCAAGCCATTCCGCACCAGCACAGCAA
CCGGCTGCATCAGCTGCTCCTGTGCCCAGCAGCAGTGTCTCCACCACCTC
CCAGAACTCAAGCAGCTCAAAGGAGTCTGGTTCGTTTGACACGGGCGATC
CAAATACCACAAACCTGTACCTGGGCAACCTGAACCCCAAGATATCCGAG
CAGCAGCTTATGGAAATCTTTGGGCGATACGGTCCCTTGGCCAGTATCAA
GATCATGTGGCCCCGCTCCGAAGAGGAGAAGCAAAGGGGACGCAATTGCG
GCTTTGTGGCCTACATGAGCCGCAAGGATGCGGAAAGGGCCCTAAAGACA
CTGAACGGGCGCTACATCATGGGCTACGAGATGCGTCTAGGATGGGGAAA
GACTGTGCCCATAATGAATACGCCCATTTTTACACCGCAAGCATTGCTTG
AGATGACCCTGCCTCCGCCTCCTTCAGGATTGCCCTTCAATGCCCAACCT
CCACCCAGTGAAGCTGATGTGCTGCCCAAGAAAAACTACAAGGAGTTCAA
CCAAGAGGACAAAGAGAATATGGAGCGGATACTTGCCAAATGCGTCGTTA
AAGTCCATATACCCACAGAGAAGGCTGTTCTTAATGTTATCCATCGGATG
ATCGAGTTTGTAATACGCGAGGGACCGATGTTTGAGGCTTTGATCATGAT
TCGGGAAATGGAGAATCCGCTCTTTGCGTTCCTCTTCGACAACGAGAGTC
CTGCCCACATCTACTACCGATGGAAGCTGTTCTCTTTGCTACAGGGCGAT
ACGCCCAATGAATGGCGGGAGGAGGAATTCCGTATGTTTAAAAACGGACC
GGTTTGGAAGCCCCCGATTGCCAACTTCTACACTCAAGGCATGCCAGATG
AGCTGGTTGTTGATCCCGATGCTCCTGTGGTGCACAAAGGAGCCTTGTCC
AATGCGCAACGCAACCGACTCGAGGATTTGATTAGGCACTTAACTCCTGA
ACGCGCCCGCATTGGAGATGCCATGATCTTCTGCATTGAGCACGCAGATG
CGGCTGATGAAATCTGCGAGTGCATCGCCGAGTCTCTGTCAAATATCAAT
ACATTGGCTTCAAAGAAGATTGCTCGACTTTATCTGATCTCAGATATACT
GCACAACTGCACTGTTAAAGTTGCGAATGCTTCGTTCTTCCGTAAATCTG
TGGAAAAACAATTGTTGGACATCTTTGATAACCTGCATAACTACTACTTG
AACATCGAGAGTAGATTGAAAGCTGAGGGCTTTAAATCCAGAGTCTGCAA
TGTTATCCGCACATGGGAGGAATGGACCATTTATCCCAAGGATTTTATGG
CCCAGCTGACGGCCAAATTCTTGGGCAAACCTTACGTCAAGCCAGTCAAT
AACTCACCTCAAGCCGAGGAAACGCGATTTGATGAGGCTCTGGACGAAGA
TATCGACGGTGCGCCCCTTTCCGGAGAGGAAAAGGACGACGAGGATCTAG
ACGGAGTGCCACTAGATGGAGCTGCTTTGCTTAAGAGCGCCTTGAAGCGA
GCCATACCTGATGCAGATGCTGGTACTCCAAAGCGTGACACACCTAAGAA
AGATGAATACCTCGATGAAATCGATGGCATACCATTGGATGATGATCTCG
ACGGTGTACCGTTGGAAAAAGAAACCAAATCTACGGCTAAGTTGCCTGGC
TTCATACCCTCAAAGTGGGAGACAGTTGATCCCCAGCAAGTAGAAGCGCA
GGCGATTACCACCAGCAAATGGGACACTCTCGATCCGCCAGATCCACCGA
AGTTCTTTAGCTCGGACGACGACAGTGGAGAAGACAATCCGCAAAAGTAC
ACCGACGAGATGCGTCAGAAGTTAAGAGACATTGAGTCGAAAGCAATTCA
GTACCAGGACGAACTGGAGTCCGGAAAGCGCCGCCTGGAACCAGGTTGGA
GTGTCCCCGAACAAGTGGAACAATTCCGGAAGCGATTACTTAAACAGGAC
TCGCGATCTGAGGCAACTGTAGACTCCCCGCTCAGCTACATGCACATAAA
ATCCAAGAGCTCCAAGGTGAGTGAGAGTCCAGCGCTGTTCAGAAGCAGTT
CCCGCAAACGATCCCACTCGCCGTTCTCTGGTGGCGAATCCAAACGACGT
GACTATTCACCCGAAACCTCGCGCTCATCCAAATCCTCGAAACGCAATCG
GTCGCGTAGTCCGTCCAGTTCACCGAAGCGGTATACAGAGCGGTCGTCTC
GCAGCTCCCGCTACGAAACTCCTGCCTCCGGATCGTCGCGATCACGCAGT
TCTCCAACCTCCTCGCGCTCCTCTCGCAGAGAAGAGCCATCGCCGCCGAG
ACATCGCAGCGACAAGCACAAGCACAAACATAGGCACTAGAAGCTTTCTA
GACCAT

BS10308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-RA 2874 CG9346-PA 1..2874 17..2890 14370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-RA 2998 CG9346-RA 77..2951 17..2891 14375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21012679..21013098 478..897 2100 100 Plus
2R 25286936 2R 21015183..21015581 2493..2891 1995 100 Plus
2R 25286936 2R 21014762..21015128 2132..2498 1820 99.7 Plus
2R 25286936 2R 21013513..21013846 1123..1456 1670 100 Plus
2R 25286936 2R 21012335..21012622 191..478 1440 100 Plus
2R 25286936 2R 21014453..21014705 1883..2135 1265 100 Plus
2R 25286936 2R 21013913..21014155 1456..1698 1215 100 Plus
2R 25286936 2R 21014210..21014393 1699..1882 920 100 Plus
2R 25286936 2R 21013157..21013339 896..1078 915 100 Plus
2R 25286936 2R 21012162..21012279 74..191 590 100 Plus
2R 25286936 2R 21012046..21012102 17..73 285 100 Plus
2R 25286936 2R 21013401..21013446 1078..1123 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:01:19 has no hits.

BS10308.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:51 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 1..2874 17..2890 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:40 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 75..2955 17..2899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:46 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 77..2950 17..2890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:49 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 75..2948 17..2890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:57 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9346-RA 77..2950 17..2890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:57 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21013913..21014155 1456..1698 100 -> Plus
2R 21014210..21014393 1699..1882 100 -> Plus
2R 21013158..21013339 897..1078 100 -> Plus
2R 21013402..21013445 1079..1122 100 -> Plus
2R 21013513..21013845 1123..1455 100 -> Plus
2R 21012046..21012102 17..73 100 -> Plus
2R 21012162..21012278 74..190 100 -> Plus
2R 21012335..21012621 191..477 100 -> Plus
2R 21012679..21013097 478..896 100 -> Plus
2R 21014453..21014705 1883..2135 100 -> Plus
2R 21014766..21015127 2136..2497 100 -> Plus
2R 21015188..21015580 2498..2890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:46 Download gff for BS10308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16900663..16900844 897..1078 100 -> Plus
arm_2R 16900907..16900950 1079..1122 100 -> Plus
arm_2R 16899551..16899607 17..73 100 -> Plus
arm_2R 16899667..16899783 74..190 100 -> Plus
arm_2R 16899840..16900126 191..477 100 -> Plus
arm_2R 16900184..16900602 478..896 100 -> Plus
arm_2R 16901018..16901350 1123..1455 100 -> Plus
arm_2R 16901418..16901660 1456..1698 100 -> Plus
arm_2R 16901715..16901898 1699..1882 100 -> Plus
arm_2R 16901958..16902210 1883..2135 100 -> Plus
arm_2R 16902271..16902632 2136..2497 100 -> Plus
arm_2R 16902693..16903085 2498..2890 100   Plus

BS10308.pep Sequence

Translation from 16 to 2889

> BS10308.pep
MSKQGNKSKDSAAASATLKRISEKKLEAFTVGTFSKRQLSKKELEDQKKK
EDAAAAAHAFKEFVETFQDAPTPSSKVWVKAGTYDAGSRREDKSEKGKLY
KPVSKLMEKSSSDKVEDYAKTLASDLKKDSGPLKKKNQEKKKSNLELFKE
ELRQIQEEREERHKYKHMASSHSAPAQQPAASAAPVPSSSVSTTSQNSSS
SKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPR
SEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGKTVPIM
NTPIFTPQALLEMTLPPPPSGLPFNAQPPPSEADVLPKKNYKEFNQEDKE
NMERILAKCVVKVHIPTEKAVLNVIHRMIEFVIREGPMFEALIMIREMEN
PLFAFLFDNESPAHIYYRWKLFSLLQGDTPNEWREEEFRMFKNGPVWKPP
IANFYTQGMPDELVVDPDAPVVHKGALSNAQRNRLEDLIRHLTPERARIG
DAMIFCIEHADAADEICECIAESLSNINTLASKKIARLYLISDILHNCTV
KVANASFFRKSVEKQLLDIFDNLHNYYLNIESRLKAEGFKSRVCNVIRTW
EEWTIYPKDFMAQLTAKFLGKPYVKPVNNSPQAEETRFDEALDEDIDGAP
LSGEEKDDEDLDGVPLDGAALLKSALKRAIPDADAGTPKRDTPKKDEYLD
EIDGIPLDDDLDGVPLEKETKSTAKLPGFIPSKWETVDPQQVEAQAITTS
KWDTLDPPDPPKFFSSDDDSGEDNPQKYTDEMRQKLRDIESKAIQYQDEL
ESGKRRLEPGWSVPEQVEQFRKRLLKQDSRSEATVDSPLSYMHIKSKSSK
VSESPALFRSSSRKRSHSPFSGGESKRRDYSPETSRSSKSSKRNRSRSPS
SSPKRYTERSSRSSRYETPASGSSRSRSSPTSSRSSRREEPSPPRHRSDK
HKHKHRH*

BS10308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9346-PA 957 CG9346-PA 1..957 1..957 4973 100 Plus