Clone Sequence Records
BS10323.3prime Sequence
856 bp (785 high quality bases) assembled on 2006-04-19
> BS10323.3prime
ATGGTCTAGAAAGCTTCTAGAACTCTGTGTGAAAACTATTCGCCGTATCG
ATCATCTTGGATTGCAGAAATATCTCGGCATGATCAGTCATCTCTTTGAG
GGTCAGCAGCTCGTCCTTGTTCTCGTCGCACAGGCTGAACAAAGTGGCCG
CCTCCTGGAGGGCATACCGCGGAGTCTTGGGGTTCACATAGTTCAGTAGC
TCACCCCGATCCGCCTTGCCATCGTGATTCTTATCGATGATCCGCTTGAA
CTCCTCGCGTCGCTCCACCAAAGTCTTCGATATCAGAGATTTTCGCATCA
GATCATCGTCATCATCCACATTCAGATCGGAAAATTCCTCCAGGGTTAGC
TGATCGTCTCCATCCTGATCGAATTGGCGCAGCAGATCATCGACCAGCTC
CAAGAGATTGGATACACTGGACTCGGGATGGCGGAAACTCAGGTATTCAT
CGATGGTCAGTGTGAACAGATCGGTTCGAGCTGCCTCCGACCACCGGGCC
TTGTCCCTCATCATATCCTCCCTGGCCCTGCGGTTCAGCGCCGTGTGGCG
AATCTCGTCATGCTCATCGATGTCCGCCTCTGTCATGCCGTGCTCCCTAA
GGAAGAAGCGGTGGTACTCGTCCCAGGTGATCAGACCATCCGCAGGACCA
ATATCCACGCGTCGGAACTCGCGGGCATTGTTCATAATCGCCTCATCAAT
GTGCTCCACAATCCGGCGATTTATGTACTGCCCCAATTCCTGGATTGACA
GAATGCCATCGCGACTGCGATCGGCACGTTTGAAAGCTTTTGCCAGTATT
TGCTTTCTCATTCACATTGCTGGCCGCTAAAATAACTGTTTCTGGCTGGT
TAGGGG
BS10323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PA | 1257 | CG31475-RA | 469..1257 | 805..17 | 3945 | 100 | Minus |
CG31475-PA | 1257 | CG31475-RA | 419..470 | 856..805 | 260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 1366..2204 | 856..17 | 4175 | 99.9 | Minus |
CG31475-RA | 2688 | CG31475-RA | 1606..2444 | 856..17 | 4175 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19200021..19200706 | 777..92 | 3430 | 100 | Minus |
3R | 32079331 | 3R | 19200776..19200852 | 93..17 | 385 | 100 | Minus |
3R | 32079331 | 3R | 19190498..19190576 | 856..777 | 350 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:42:17 has no hits.
BS10323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:21 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 419..1257 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:54 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 419..1257 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:34 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1606..2447 | 11..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:39 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1606..2447 | 11..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:39 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190498..19190576 | 777..856 | 98 | -> | Minus |
3R | 19200022..19200706 | 92..776 | 100 | -> | Minus |
3R | 19200778..19200855 | 11..91 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:34 Download gff for
BS10323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15016220..15016298 | 777..856 | 98 | -> | Minus |
arm_3R | 15025744..15026428 | 92..776 | 100 | -> | Minus |
arm_3R | 15026500..15026577 | 11..91 | 96 | | Minus |
BS10323.5prime Sequence
932 bp (757 high quality bases) assembled on 2006-04-19
> BS10323.5prime
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCAATCAGGATGGAG
BS10323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PA | 1257 | CG31475-RA | 1..916 | 17..932 | 4555 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 948..1863 | 17..932 | 4565 | 99.9 | Plus |
CG31475-RA | 2688 | CG31475-RA | 1188..2103 | 17..932 | 4565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19190080..19190576 | 17..513 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 19200021..19200440 | 513..932 | 2085 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 04:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 117..356 | 295 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2520 | 136..347 | 260 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 185..330 | 173 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2220..2428 | 116..324 | 133 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 199..346 | 132 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 118..330 | 123 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 292..436 | 116 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 288..339 | 115 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 292..474 | 111 | 59 | Plus |
BS10323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:22 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:56 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:17 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..2103 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:58 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..2103 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:58 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190073..19190576 | 9..513 | 99 | -> | Plus |
3R | 19200022..19200440 | 514..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:17 Download gff for
BS10323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15015795..15016298 | 9..513 | 99 | -> | Plus |
arm_3R | 15025744..15026162 | 514..932 | 99 | | Plus |
BS10323.complete Sequence
1289 bp (1289 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636632
> BS10323.complete
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCGATCAGGATGGAGACGATCAGCTAACCCTGG
AGGAATTTTCCGATCTGAATGTGGATGATGACGATGATCTGATGCGAAAA
TCTCTGATATCGAAGACTTTGGTGGAGCGACGCGAGGAGTTCAAGCGGAT
CATCGATAAGAATCACGATGGCAAGGCGGATCGGGGTGAGCTACTGAACT
ATGTGAACCCCAAGACTCCGCGGTATGCCCTCCAGGAGGCGGCCACTTTG
TTCAGCCTGTGCGACGAGAACAAGGACGAGCTGCTGACCCTCAAAGAGAT
GACTGATCATGCCGAGATATTTCTGCAATCCAAGATGATCGATACGGCGA
ATAGTTTTCACACAGAGTTCTAGAAGCTTTCTAGACCAT
BS10323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 1257 | CG31475-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
CG31475-RA | 1257 | CG31475-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 948..2204 | 17..1273 | 6285 | 100 | Plus |
CG31475-RA | 2688 | CG31475-RA | 1188..2444 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19200021..19200706 | 513..1198 | 3430 | 100 | Plus |
3R | 32079331 | 3R | 19190080..19190576 | 17..513 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 19200776..19200852 | 1197..1273 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 117..356 | 295 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 185..330 | 173 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 199..346 | 132 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 118..330 | 123 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 292..436 | 116 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 288..339 | 115 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 292..474 | 111 | 59 | Plus |
BS10323.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:19 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:48 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1186..2442 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:51 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1188..2444 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:19 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1179..2445 | 9..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:02 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1188..2444 | 17..1273 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:02 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190080..19190576 | 17..513 | 100 | -> | Plus |
3R | 19200022..19200706 | 514..1198 | 100 | -> | Plus |
3R | 19200778..19200852 | 1199..1273 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:51 Download gff for
BS10323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15026500..15026574 | 1199..1273 | 100 | | Plus |
arm_3R | 15015802..15016298 | 17..513 | 100 | -> | Plus |
arm_3R | 15025744..15026428 | 514..1198 | 100 | -> | Plus |
BS10323.pep Sequence
Translation from 16 to 1272
> BS10323.pep
MTFVNKLSKSFRWLRCSTLCAILFYMFFIGLILHSTSQKLQQQLKEQGTS
SSSSSSSSSSSSSSSSSSSSTQADTKMAPNVGHNGAQRWPNTLQELEQQQ
QKHEQSMRLQPVANNLDSRNENNHRQPHPQSQKVQNASKSPNQPETVILA
ASNVNEKQILAKAFKRADRSRDGILSIQELGQYINRRIVEHIDEAIMNNA
REFRRVDIGPADGLITWDEYHRFFLREHGMTEADIDEHDEIRHTALNRRA
REDMMRDKARWSEAARTDLFTLTIDEYLSFRHPESSVSNLLELVDDLLRQ
FDQDGDDQLTLEEFSDLNVDDDDDLMRKSLISKTLVERREEFKRIIDKNH
DGKADRGELLNYVNPKTPRYALQEAATLFSLCDENKDELLTLKEMTDHAE
IFLQSKMIDTANSFHTEF*
BS10323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PB | 418 | CG31475-PB | 1..418 | 1..418 | 2143 | 100 | Plus |
CG31475-PA | 418 | CG31475-PA | 1..418 | 1..418 | 2143 | 100 | Plus |
CG31650-PG | 339 | CG31650-PG | 35..324 | 102..409 | 182 | 23.2 | Plus |
CG31650-PF | 342 | CG31650-PF | 35..327 | 102..409 | 176 | 22.6 | Plus |
CG31650-PE | 342 | CG31650-PE | 35..327 | 102..409 | 176 | 22.6 | Plus |