Clone BS10323 Report

Search the DGRC for BS10323

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG31475-RA
Protein status:BS10323.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10323.3prime Sequence

856 bp (785 high quality bases) assembled on 2006-04-19

> BS10323.3prime
ATGGTCTAGAAAGCTTCTAGAACTCTGTGTGAAAACTATTCGCCGTATCG
ATCATCTTGGATTGCAGAAATATCTCGGCATGATCAGTCATCTCTTTGAG
GGTCAGCAGCTCGTCCTTGTTCTCGTCGCACAGGCTGAACAAAGTGGCCG
CCTCCTGGAGGGCATACCGCGGAGTCTTGGGGTTCACATAGTTCAGTAGC
TCACCCCGATCCGCCTTGCCATCGTGATTCTTATCGATGATCCGCTTGAA
CTCCTCGCGTCGCTCCACCAAAGTCTTCGATATCAGAGATTTTCGCATCA
GATCATCGTCATCATCCACATTCAGATCGGAAAATTCCTCCAGGGTTAGC
TGATCGTCTCCATCCTGATCGAATTGGCGCAGCAGATCATCGACCAGCTC
CAAGAGATTGGATACACTGGACTCGGGATGGCGGAAACTCAGGTATTCAT
CGATGGTCAGTGTGAACAGATCGGTTCGAGCTGCCTCCGACCACCGGGCC
TTGTCCCTCATCATATCCTCCCTGGCCCTGCGGTTCAGCGCCGTGTGGCG
AATCTCGTCATGCTCATCGATGTCCGCCTCTGTCATGCCGTGCTCCCTAA
GGAAGAAGCGGTGGTACTCGTCCCAGGTGATCAGACCATCCGCAGGACCA
ATATCCACGCGTCGGAACTCGCGGGCATTGTTCATAATCGCCTCATCAAT
GTGCTCCACAATCCGGCGATTTATGTACTGCCCCAATTCCTGGATTGACA
GAATGCCATCGCGACTGCGATCGGCACGTTTGAAAGCTTTTGCCAGTATT
TGCTTTCTCATTCACATTGCTGGCCGCTAAAATAACTGTTTCTGGCTGGT
TAGGGG

BS10323.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PA 1257 CG31475-RA 469..1257 805..17 3945 100 Minus
CG31475-PA 1257 CG31475-RA 419..470 856..805 260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 1366..2204 856..17 4175 99.9 Minus
CG31475-RA 2688 CG31475-RA 1606..2444 856..17 4175 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19200021..19200706 777..92 3430 100 Minus
3R 32079331 3R 19200776..19200852 93..17 385 100 Minus
3R 32079331 3R 19190498..19190576 856..777 350 98.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:42:17 has no hits.

BS10323.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:21 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 419..1257 17..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:54 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 419..1257 17..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:34 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1606..2447 11..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:39 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1606..2447 11..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:39 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19190498..19190576 777..856 98 -> Minus
3R 19200022..19200706 92..776 100 -> Minus
3R 19200778..19200855 11..91 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:34 Download gff for BS10323.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15016220..15016298 777..856 98 -> Minus
arm_3R 15025744..15026428 92..776 100 -> Minus
arm_3R 15026500..15026577 11..91 96   Minus

BS10323.5prime Sequence

932 bp (757 high quality bases) assembled on 2006-04-19

> BS10323.5prime
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCAATCAGGATGGAG

BS10323.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PA 1257 CG31475-RA 1..916 17..932 4555 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 948..1863 17..932 4565 99.9 Plus
CG31475-RA 2688 CG31475-RA 1188..2103 17..932 4565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19190080..19190576 17..513 2485 100 Plus
3R 32079331 3R 19200021..19200440 513..932 2085 99.8 Plus
Blast to na_te.dros performed 2015-02-10 04:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6968 117..356 295 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2520 136..347 260 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6855 185..330 173 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2220..2428 116..324 133 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6865 199..346 132 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2830 118..330 123 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6905 292..436 116 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6769 288..339 115 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6916 292..474 111 59 Plus

BS10323.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:22 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:55:56 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:17 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..2103 9..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:58 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..2103 9..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:58 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19190073..19190576 9..513 99 -> Plus
3R 19200022..19200440 514..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:17 Download gff for BS10323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15015795..15016298 9..513 99 -> Plus
arm_3R 15025744..15026162 514..932 99   Plus

BS10323.complete Sequence

1289 bp (1289 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636632

> BS10323.complete
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCGATCAGGATGGAGACGATCAGCTAACCCTGG
AGGAATTTTCCGATCTGAATGTGGATGATGACGATGATCTGATGCGAAAA
TCTCTGATATCGAAGACTTTGGTGGAGCGACGCGAGGAGTTCAAGCGGAT
CATCGATAAGAATCACGATGGCAAGGCGGATCGGGGTGAGCTACTGAACT
ATGTGAACCCCAAGACTCCGCGGTATGCCCTCCAGGAGGCGGCCACTTTG
TTCAGCCTGTGCGACGAGAACAAGGACGAGCTGCTGACCCTCAAAGAGAT
GACTGATCATGCCGAGATATTTCTGCAATCCAAGATGATCGATACGGCGA
ATAGTTTTCACACAGAGTTCTAGAAGCTTTCTAGACCAT

BS10323.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 1257 CG31475-PB 1..1257 17..1273 6285 100 Plus
CG31475-RA 1257 CG31475-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 948..2204 17..1273 6285 100 Plus
CG31475-RA 2688 CG31475-RA 1188..2444 17..1273 6285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19200021..19200706 513..1198 3430 100 Plus
3R 32079331 3R 19190080..19190576 17..513 2485 100 Plus
3R 32079331 3R 19200776..19200852 1197..1273 385 100 Plus
Blast to na_te.dros performed 2014-11-28 07:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6968 117..356 295 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6855 185..330 173 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6865 199..346 132 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2830 118..330 123 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6905 292..436 116 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6769 288..339 115 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6916 292..474 111 59 Plus

BS10323.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:19 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:48 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1186..2442 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:51 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1188..2444 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:19 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1179..2445 9..1279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:02 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1188..2444 17..1273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:02 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19190080..19190576 17..513 100 -> Plus
3R 19200022..19200706 514..1198 100 -> Plus
3R 19200778..19200852 1199..1273 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:51 Download gff for BS10323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15026500..15026574 1199..1273 100   Plus
arm_3R 15015802..15016298 17..513 100 -> Plus
arm_3R 15025744..15026428 514..1198 100 -> Plus

BS10323.pep Sequence

Translation from 16 to 1272

> BS10323.pep
MTFVNKLSKSFRWLRCSTLCAILFYMFFIGLILHSTSQKLQQQLKEQGTS
SSSSSSSSSSSSSSSSSSSSTQADTKMAPNVGHNGAQRWPNTLQELEQQQ
QKHEQSMRLQPVANNLDSRNENNHRQPHPQSQKVQNASKSPNQPETVILA
ASNVNEKQILAKAFKRADRSRDGILSIQELGQYINRRIVEHIDEAIMNNA
REFRRVDIGPADGLITWDEYHRFFLREHGMTEADIDEHDEIRHTALNRRA
REDMMRDKARWSEAARTDLFTLTIDEYLSFRHPESSVSNLLELVDDLLRQ
FDQDGDDQLTLEEFSDLNVDDDDDLMRKSLISKTLVERREEFKRIIDKNH
DGKADRGELLNYVNPKTPRYALQEAATLFSLCDENKDELLTLKEMTDHAE
IFLQSKMIDTANSFHTEF*

BS10323.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PB 418 CG31475-PB 1..418 1..418 2143 100 Plus
CG31475-PA 418 CG31475-PA 1..418 1..418 2143 100 Plus
CG31650-PG 339 CG31650-PG 35..324 102..409 182 23.2 Plus
CG31650-PF 342 CG31650-PF 35..327 102..409 176 22.6 Plus
CG31650-PE 342 CG31650-PE 35..327 102..409 176 22.6 Plus