Clone Sequence Records
BS10328.3prime Sequence
849 bp (772 high quality bases) assembled on 2006-04-19
> BS10328.3prime
ATGGTCTAGAAAGCTTTTATTCACTAACCAACGCCATTTCTTGCGCCGCG
GGCGTCAGTGACTGGCCCAAAGCGGAGGCAGCGGACACGGCGCTGCTCAT
CCCATCGTCCTCGTCGTCGTCCATCGATGCATTCTTGCGCTCAATCTCCG
CTAACGCTGGCTGGTCATCATCATCACAATTGCTGCGCTCGACCTGGTCG
GCAGCTTCTTCTTCCTGCGCCTCATCGGCAAAGGACACTTCTACGGGGCT
GTTGTTGCTATCACCATTAGCTGTCGCAGCCGTCGTCGTCTGGTCGTGCT
GGTTATTGTTGGCTTTATCCTCACTGGCGGACTTATTGTTATCACTGTCG
GCATCGTCGCTCCTCGCCGGCGCCGTCTCCTCTTCGGGTATGTCCTCGAT
CAGGCTGCGATTGCCGGATCCGGCCGATGGACTGCGAGGCGGGGTTGTTG
TCGTCGCCGCTGCGGCTGTCGCTGGTATTTCAACCTCAGCCACTTTGCGC
AGCAGAACGGGATCGGACGCACGCAATGAGCTCTCCGAGCCACCGACGCC
TTCACCGCTTGGTCGCAGGACGAGGTAGAGCAGTATATCGGACAGCGAGA
TAATGCCGATCACTTTGCGATTCTCGTCGACCACCACCAGTCGATGTACT
TCGGCGCGGACGATTCGTTCCATGATCGTGTAGAGCGATTCGTCCAGATT
GCACTTCTGCACGCCCTCGAACCACTCGTTCCGGTGCTCGTTGGCTTTTG
CGCAGCGAAACATCGAGATCGTTGTAGGTTTTCTCGGCGGCGAGATTAAT
CACATCAAACTTTGCGTAAATGTCAACGAGGCGACCATCGGAATCCACT
BS10328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17299-PK | 2721 | SNF4Agamma-RK | 1990..2721 | 748..17 | 3660 | 100 | Minus |
CG17299-PL | 2157 | SNF4Agamma-RL | 1426..2157 | 748..17 | 3660 | 100 | Minus |
CG17299-PI | 1617 | SNF4Agamma-RI | 886..1617 | 748..17 | 3660 | 100 | Minus |
CG17299-PJ | 2721 | SNF4Agamma-RJ | 1990..2721 | 748..17 | 3660 | 100 | Minus |
CG17299-PA | 2844 | SNF4Agamma-RA | 2113..2844 | 748..17 | 3660 | 100 | Minus |
CG17299-PB | 2844 | SNF4Agamma-RB | 2113..2844 | 748..17 | 3660 | 100 | Minus |
CG17299-PF | 4203 | SNF4Agamma-RF | 3472..4203 | 748..17 | 3660 | 100 | Minus |
CG17299-PC | 2721 | SNF4Agamma-RC | 1990..2721 | 748..17 | 3660 | 100 | Minus |
CG17299-PE | 2721 | SNF4Agamma-RE | 1990..2721 | 748..17 | 3660 | 100 | Minus |
CG17299-PG | 2445 | SNF4Agamma-RG | 1714..2445 | 748..17 | 3660 | 100 | Minus |
CG17299-PK | 2721 | SNF4Agamma-RK | 1890..1992 | 849..747 | 515 | 100 | Minus |
CG17299-PL | 2157 | SNF4Agamma-RL | 1326..1428 | 849..747 | 515 | 100 | Minus |
CG17299-PI | 1617 | SNF4Agamma-RI | 786..888 | 849..747 | 515 | 100 | Minus |
CG17299-PJ | 2721 | SNF4Agamma-RJ | 1890..1992 | 849..747 | 515 | 100 | Minus |
CG17299-PA | 2844 | SNF4Agamma-RA | 2013..2115 | 849..747 | 515 | 100 | Minus |
CG17299-PB | 2844 | SNF4Agamma-RB | 2013..2115 | 849..747 | 515 | 100 | Minus |
CG17299-PF | 4203 | SNF4Agamma-RF | 3372..3474 | 849..747 | 515 | 100 | Minus |
CG17299-PC | 2721 | SNF4Agamma-RC | 1890..1992 | 849..747 | 515 | 100 | Minus |
CG17299-PE | 2721 | SNF4Agamma-RE | 1890..1992 | 849..747 | 515 | 100 | Minus |
CG17299-PG | 2445 | SNF4Agamma-RG | 1614..1716 | 849..747 | 515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNF4Agamma-RE | 3308 | CG17299-RE | 2317..3149 | 849..16 | 4145 | 99.9 | Minus |
SNF4Agamma-RC | 3197 | CG17299-RC | 2206..3038 | 849..16 | 4145 | 99.9 | Minus |
SNF4Agamma-RG | 2786 | CG17299-RG | 1795..2627 | 849..16 | 4145 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21211748..21212528 | 797..16 | 3860 | 99.9 | Minus |
3R | 32079331 | 3R | 21211539..21211590 | 849..798 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:03:00 has no hits.
BS10328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:31 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17299-PG | 1614..2445 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:56:11 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17299-PC | 1890..2721 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:35 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RG | 1795..2630 | 12..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:07 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RG | 1795..2630 | 12..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:07 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21211539..21211590 | 798..849 | 100 | -> | Minus |
3R | 21211748..21212531 | 12..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:35 Download gff for
BS10328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17037261..17037312 | 798..849 | 100 | -> | Minus |
arm_3R | 17037470..17038253 | 12..797 | 99 | | Minus |
BS10328.5prime Sequence
891 bp (772 high quality bases) assembled on 2006-04-19
> BS10328.5prime
GAAGTTATCAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCA
GCAACTACGAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACC
TCCTCCACGCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCT
CATGCCCACGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTC
GCTTCGCCGTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGA
ACGCCTCCGCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGA
CTTCGACATCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGA
TGCCAGGATCACGACCCTCCAGCGCTCCCGCAGAGCCAAATGCCAAGGCG
GCCAAGAAGGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGAA
GGAGCAGTCGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGG
CGAGAAGGAACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCAC
AGCGAGAAGATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGG
ATCGCGGTCCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCG
TGCTCAATCAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCA
ACGATATTCGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCA
GAAGGAGAAGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCA
GCAGCACCTACTCCGTTCCCGGCGGCACAGGCCCGGCCACGAGCTCGGCA
GCAGGTGGAGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGG
BS10328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17299-PA | 2844 | SNF4Agamma-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
CG17299-PB | 2844 | SNF4Agamma-RB | 1..875 | 17..891 | 4350 | 99.8 | Plus |
CG17299-PF | 4203 | SNF4Agamma-RF | 1660..2234 | 317..891 | 2850 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNF4Agamma-RA | 3614 | CG17299-RA | 611..1485 | 17..891 | 4360 | 99.9 | Plus |
SNF4Agamma-RB | 3348 | CG17299-RB | 440..1314 | 17..891 | 4360 | 99.9 | Plus |
SNF4Agamma-RF | 4769 | CG17299-RF | 2066..2640 | 317..891 | 2860 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21178579..21179032 | 438..891 | 2255 | 99.8 | Plus |
3R | 32079331 | 3R | 21155233..21155388 | 162..317 | 780 | 100 | Plus |
3R | 32079331 | 3R | 21154927..21155075 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 21178275..21178399 | 314..438 | 625 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 682..724 | 849..891 | 115 | 79.5 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8564..8606 | 849..891 | 115 | 79.5 | Plus |
BS10328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:36:33 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17299-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:56:13 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17299-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:01 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 436..1314 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:49 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 436..1314 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:49 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21154923..21155071 | 9..161 | 97 | -> | Plus |
3R | 21155233..21155387 | 162..316 | 100 | -> | Plus |
3R | 21178278..21178399 | 317..438 | 100 | -> | Plus |
3R | 21178580..21179032 | 439..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:01 Download gff for
BS10328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16980645..16980793 | 9..161 | 97 | -> | Plus |
arm_3R | 16980955..16981109 | 162..316 | 100 | -> | Plus |
arm_3R | 17004000..17004121 | 317..438 | 100 | -> | Plus |
arm_3R | 17004302..17004754 | 439..891 | 99 | | Plus |
BS10328.complete Sequence
2876 bp assembled on 2007-11-30
GenBank Submission: FJ636633
> BS10328.complete
GAAGTTATCAGTCGACATGCAGAGCAGTGCCGGCGGAGCGTCGGGGGGCA
GCAACTACGAGGACGTGGCCGCCGCCCGCCGAGGACGCTTCCGTGTCACC
TCCTCCACGCCACAGGGCCCGCCCGAAACGACGCTCGGCCGCTTTCGTCT
CATGCCCACGTCTAATTATGGCGCCATTTCGCCAATCCTCCAGCGGGGTC
GCTTCGCCGTGATTCCCGAAGAGCCCCAAGCCGGTTCCCCCGCATTGGGA
ACGCCTCCGCCGGGCGGCCGAACAGCGCGTTCTCCATCGCCCGAATGGGA
CTTCGACATCGAGCAGGAGCAGGATGGCAGCCTCGGAGGAGCCGGCCGGA
TGCCAGGATCACGACCCTCCAGCGCTCCCGCAGAGCCAAATGCCAAGGCG
GCCAAGAAGGCCTACAAAAAGATGGAAAAGGAGCAGCGTCGCCAGGAGAA
GGAGCAGTCGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGCGCGAGACGG
CGAGAAGGAACGAACGCGAGGCGGCCAAGCTGGAGAAGATCAACAGGCAC
AGCGAGAAGATCTCACGCAGCACGGAGCGAATGGCCATGGCCGGTGTGGG
ATCGCGGTCCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGGACTCGCCCG
TGCTCAATCAGTCGACGGTGCACGGTATAGCGTCACCCAACCGAAGGCCA
ACGATATTCGACGTTTTCCGACCGCGTGCGAAATCCGATGCGAAGCGGCA
GAAGGAGAAGCATCTGCTGGATCCCTCGTCCGCCGACAGCAGCGCCACCA
GCAGCACCTACTCCGTTTCCGGCGGCACAGGCCCGGCCACGAGCTCGGCA
GCAGGTGGAGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGGCGCAGCGGG
AGGAGCCGGTGGCCTTATGAACTCCATGAAGGTGGCCATGCAGAACTTTA
GCCATCGCCAGCATCCCGCCGTGACGATAACGAGCGCCGACGGCACGCAA
TCAACGGCAAAGAGCAAGTACAAAGACGGCAGTGCCCATCCGCATCAAGG
CAGCGACGCGCAGTATTACCACACGGTGACGGCGGTGCGTCCAAACTCTT
CCCAACGGTCGCCGATGACCAAGGTCATGGATCTGTTCCGGCATCGATCC
AGCTCGGTTGTCAGCGAAGCCGACAAACGCAAAGCGCGCGCGGCGGCGCA
TCAGCAACAGTTGGCTGTGCAAAGTGCTCACATGCGTCGTGCCTCCGCGG
ATTTGGAGAAACGTCGTGCATCAGTTGGTGCCGCAGGTCGAGGACTGCGA
GGGGATGGTACTTTGGATCCACACCATGCAGCCATCCTCTTCAGAGACTC
ACGAGGGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCAG
ATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCAC
AAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACAC
CCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTGC
GAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCTA
ACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAAA
TGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGCG
TGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTCC
CTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGCC
CGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAAC
GCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGCG
TACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACAT
CGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTTG
TGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCTC
GTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAAC
CTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAACG
AGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACACG
ATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCGA
CGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTCT
ACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTCA
TTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAAT
ACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCAT
CGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGAG
ACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCGC
CAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCTG
CGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGCC
GATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATTG
TGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCAT
CGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGCC
TCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGGT
TAGTGAATAAAAGCTTTCTAGACCAT
BS10328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNF4Agamma-RA | 2844 | CG17299-PA | 1..2844 | 17..2860 | 14220 | 100 | Plus |
SNF4Agamma-RB | 2844 | CG17299-PB | 1..2844 | 17..2860 | 14220 | 100 | Plus |
SNF4Agamma-RF | 4203 | CG17299-PF | 1660..4203 | 317..2860 | 12720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNF4Agamma-RA | 3614 | CG17299-RA | 611..3455 | 17..2861 | 14225 | 100 | Plus |
SNF4Agamma-RB | 3348 | CG17299-RB | 440..3284 | 17..2861 | 14225 | 100 | Plus |
SNF4Agamma-RF | 4769 | CG17299-RF | 2066..4610 | 317..2861 | 12725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21211748..21212528 | 2081..2861 | 3905 | 100 | Plus |
3R | 32079331 | 3R | 21178579..21179204 | 438..1063 | 3130 | 100 | Plus |
3R | 32079331 | 3R | 21210788..21211080 | 1406..1698 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 21211387..21211590 | 1877..2080 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 21211141..21211319 | 1698..1876 | 895 | 100 | Plus |
3R | 32079331 | 3R | 21155233..21155388 | 162..317 | 780 | 100 | Plus |
3R | 32079331 | 3R | 21154927..21155075 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 21202452..21202585 | 1224..1357 | 670 | 100 | Plus |
3R | 32079331 | 3R | 21179265..21179390 | 1061..1186 | 630 | 100 | Plus |
3R | 32079331 | 3R | 21178275..21178399 | 314..438 | 625 | 100 | Plus |
3R | 32079331 | 3R | 21207618..21207667 | 1357..1406 | 250 | 100 | Plus |
3R | 32079331 | 3R | 21185547..21185586 | 1186..1225 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:37:17 has no hits.
BS10328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:54 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 1..2844 | 17..2860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:26 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 440..3281 | 17..2858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:46 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 440..3281 | 17..2858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:18 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 440..3281 | 17..2858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:22 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNF4Agamma-RB | 440..3281 | 17..2858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:22 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21179268..21179390 | 1064..1186 | 100 | -> | Plus |
3R | 21185548..21185584 | 1187..1223 | 100 | -> | Plus |
3R | 21202452..21202585 | 1224..1357 | 100 | -> | Plus |
3R | 21207619..21207667 | 1358..1406 | 100 | -> | Plus |
3R | 21211141..21211319 | 1698..1876 | 100 | -> | Plus |
3R | 21211387..21211590 | 1877..2080 | 100 | -> | Plus |
3R | 21210789..21211079 | 1407..1697 | 100 | -> | Plus |
3R | 21154927..21155071 | 17..161 | 100 | -> | Plus |
3R | 21155233..21155387 | 162..316 | 100 | -> | Plus |
3R | 21178278..21178399 | 317..438 | 100 | -> | Plus |
3R | 21178580..21179204 | 439..1063 | 100 | -> | Plus |
3R | 21211748..21212525 | 2081..2858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:46 Download gff for
BS10328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17037470..17038247 | 2081..2858 | 100 | | Plus |
arm_3R | 17036863..17037041 | 1698..1876 | 100 | -> | Plus |
arm_3R | 17037109..17037312 | 1877..2080 | 100 | -> | Plus |
arm_3R | 16980649..16980793 | 17..161 | 100 | -> | Plus |
arm_3R | 16980955..16981109 | 162..316 | 100 | -> | Plus |
arm_3R | 17004000..17004121 | 317..438 | 100 | -> | Plus |
arm_3R | 17004302..17004926 | 439..1063 | 100 | -> | Plus |
arm_3R | 17004990..17005112 | 1064..1186 | 100 | -> | Plus |
arm_3R | 17011270..17011306 | 1187..1223 | 100 | -> | Plus |
arm_3R | 17028174..17028307 | 1224..1357 | 100 | -> | Plus |
arm_3R | 17033341..17033389 | 1358..1406 | 100 | -> | Plus |
arm_3R | 17036511..17036801 | 1407..1697 | 100 | -> | Plus |
BS10328.pep Sequence
Translation from 16 to 2859
> BS10328.pep
MQSSAGGASGGSNYEDVAAARRGRFRVTSSTPQGPPETTLGRFRLMPTSN
YGAISPILQRGRFAVIPEEPQAGSPALGTPPPGGRTARSPSPEWDFDIEQ
EQDGSLGGAGRMPGSRPSSAPAEPNAKAAKKAYKKMEKEQRRQEKEQSRR
EKEARKLERETARRNEREAAKLEKINRHSEKISRSTERMAMAGVGSRSGS
LERRRSGEDSPVLNQSTVHGIASPNRRPTIFDVFRPRAKSDAKRQKEKHL
LDPSSADSSATSSTYSVSGGTGPATSSAAGGAGGAAAAAGQGAAGGAGGL
MNSMKVAMQNFSHRQHPAVTITSADGTQSTAKSKYKDGSAHPHQGSDAQY
YHTVTAVRPNSSQRSPMTKVMDLFRHRSSSVVSEADKRKARAAAHQQQLA
VQSAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAILFRDSRGLPV
ADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVK
KAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQ
LEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVIDPA
TGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIETADE
TTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLD
VSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKV
IGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVAEVEIPATAA
AATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDNNKSASEDKA
NNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVERSNCDDDDQ
PALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQEMALVSE*
BS10328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNF4Agamma-PA | 947 | CG17299-PA | 1..947 | 1..947 | 4793 | 100 | Plus |
SNF4Agamma-PB | 947 | CG17299-PB | 1..947 | 1..947 | 4793 | 100 | Plus |
SNF4Agamma-PF | 1400 | CG17299-PF | 552..1400 | 99..947 | 4269 | 99.8 | Plus |
SNF4Agamma-PS | 1400 | CG17299-PS | 552..1400 | 99..947 | 4269 | 99.8 | Plus |
SNF4Agamma-PR | 1400 | CG17299-PR | 552..1400 | 99..947 | 4269 | 99.8 | Plus |