Clone BS10349 Report

Search the DGRC for BS10349

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG5621-RA
Protein status:BS10349.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10349.3prime Sequence

831 bp (772 high quality bases) assembled on 2006-04-19

> BS10349.3prime
ATGGTCTAGAAAGCTTCTAATCTCCAGGGCCACGGCGCCAGAGTCCTCGT
CCGCGTCCTGCACACACCCACACATGCACGAGCTGCCAGAGATTGAGATT
AGGCTGATCACTTACCGAACAAGCTCCCCCGCCGCGCTTCTCCTGCCACC
ACTTGGTCTTCATCTTGGTCAGCAGACCCTGCTCCTGCATCTCTAGAACA
GCCTGGCTCAACGTGTCCCTGTACGGCCAGTTCTTTCGCATGGCTATCCC
GTATCCCTTCTCGTCCAGCAATGCTCCCACCTGAGTGAGCGTGCATCGGC
GCTCTGTGATATACTCAATGGTGGTGGACTCCATGAGAAAGGCGTAGTTG
GAGTTCTCCACGCGATCAACTCCCTCCTGGTTGGTGTTGGTCATGTACTG
GGGATTATCCCTCATGAACTCGTACATCCGCTGGTAGGTGGGATAGTTTG
ATTCCTTAAAGAAGTTAAAGGTAGCTCCCCCAATTTTGGCCCCGTAGTTT
ACACCGCCCTTGTTCTTCGATAGGTCATCCGCATCATTGATGGGCGTTAC
CAAAGACTCTACAGTGAGGAAAGCCGCCAGATTAGCAGTGTAAGAGGAGA
CCAAAATCAATGTGAAGAACCACCAGGAAGCGGCCACGGCCCGAGTGGAG
TAAGCCTTGGGAGCCAGTTCAGATCCTTGCTGAAGTAGAGCACCTATGGA
GAACCATAGACAGTTGGCGAAACTAAACTGATTCTCCAATTCCGTTGGCT
CCTCAATGCAGGGATACGGATTGTCCCACTCCGCCGGAGATAGCCTTCCC
AGCACGAACATGCTGATGGATACGCCCATGT

BS10349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PA 2469 CG5621-RA 1655..2469 831..17 4075 100 Minus
CG5621-PB 2871 CG5621-RB 1655..2371 831..115 3585 100 Minus
CG5621-PB 2871 CG5621-RB 2370..2411 58..17 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 3640 CG5621-RA 1815..2629 831..17 4075 100 Minus
CG5621-RD 3008 CG5621-RD 1815..2531 831..115 3585 100 Minus
CG5621-RC 3011 CG5621-RC 1815..2531 831..115 3585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20906746..20906974 460..232 1130 99.6 Minus
3R 32079331 3R 20907038..20907252 231..17 1075 100 Minus
3R 32079331 3R 20906496..20906698 656..454 1015 100 Minus
3R 32079331 3R 20906257..20906432 831..656 880 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:40:04 has no hits.

BS10349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:11 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1655..2469 17..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:03 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1655..2469 17..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:03 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1815..2635 12..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:43 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1815..2635 12..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:43 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20906257..20906431 657..831 100 -> Minus
3R 20906496..20906697 455..656 100 -> Minus
3R 20906752..20906974 232..454 100 -> Minus
3R 20907038..20907258 12..231 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:03 Download gff for BS10349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16731979..16732153 657..831 100 -> Minus
arm_3R 16732218..16732419 455..656 100 -> Minus
arm_3R 16732474..16732696 232..454 100 -> Minus
arm_3R 16732760..16732980 12..231 99   Minus

BS10349.5prime Sequence

858 bp (798 high quality bases) assembled on 2006-04-19

> BS10349.5prime
GAAGTTATCAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGA
GTTTTCCACTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGT
TGCCGAGGAGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCC
GGATCTCGAGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGA
ATGAGGATCTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAAC
TCCTTCGAAACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGT
GGCAGTTTTCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCA
TCTGCGACGCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGG
GCCCAGCTGCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGT
GGCCCTGCGGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTA
TCTACGAGTCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATG
TACGGCACCGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCT
GAACGGCAACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATT
TCTCGTTTGTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTCAAG
CAAGCCCAGCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATTATCGG
CAACCTGGACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCGGAA
CCAACATCACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAGGTGCAG
GAGGTGGC

BS10349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PB 2871 CG5621-RB 1..842 17..858 4210 100 Plus
CG5621-PA 2469 CG5621-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RD 3008 CG5621-RD 161..1002 17..858 4210 100 Plus
CG5621-RC 3011 CG5621-RC 161..1002 17..858 4210 100 Plus
CG5621-RA 3640 CG5621-RA 161..1002 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20902687..20903256 289..858 2850 100 Plus
3R 32079331 3R 20902424..20902588 125..289 825 100 Plus
3R 32079331 3R 20902116..20902226 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:09:23 has no hits.

BS10349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:12 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:04 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:05 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 153..1002 5..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:08 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 153..1002 5..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:08 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20902108..20902224 5..125 95 -> Plus
3R 20902425..20902588 126..289 100 -> Plus
3R 20902688..20903256 290..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:05 Download gff for BS10349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16727830..16727946 5..125 95 -> Plus
arm_3R 16728147..16728310 126..289 100 -> Plus
arm_3R 16728410..16728978 290..858 100   Plus

BS10349.complete Sequence

2501 bp assembled on 2007-11-30

GenBank Submission: FJ636635

> BS10349.complete
GAAGTTATCAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGA
GTTTTCCACTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGT
TGCCGAGGAGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCC
GGATCTCGAGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGA
ATGAGGATCTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAAC
TCCTTCGAAACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGT
GGCAGTTTTCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCA
TCTGCGACGCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGG
GCCCAGCTGCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGT
GGCCCTGCGGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTA
TCTACGAGTCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATG
TACGGCACCGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCT
GAACGGCAACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATT
TCTCGTTTGTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTCAAG
CAAGCCCAGCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATTATCGG
CAACCTGGACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCGGAA
CCAACATCACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAGGTGCAG
GAGGTGGCTAAGGCACTCTACGAGAGCGAGGAACCCTTCCAAAACGTGTC
CTGCCCCCTGACCAACAGCATGGCCCTGGTCTACGATGGCGTCCAGCTTC
TGGCCGAGACCTACAAGCATGTGAACTTCCGGCCCGTGGCCCTCAGTTGT
AACGATGACAGTGCCTGGGACAAGGGCTACACGCTCGTCAACTACATGAA
GTCGCTAACGCTGAATGGCCTCACGGGACCCATTCGGTTTGACTACGAGG
GACTCCGCACGGATTTCAAGCTGGAAGTCATTGAGCTGGCCGTTTCGGGT
ATGCAGAAAATCGGGCAATGGAGCGGCGAGGATGGCTTCCAGGAGAATCG
TCCTGCCCCGGCACACTCCCTGGAGCCGGATATGCGTTCGCTGGTGAACA
AAAGCTTCGTCGTCATCACGGCCATTAGTGAACCCTATGGCATGCTAAAG
GAGACCTCCGAGAAGCTGGAGGGCAACGATCAGTTTGAGGGCTTCGGCAT
CGAACTAATTGACGAGCTGTCCAAGAAGCTGGGATTCTCCTACACATGGC
GCCTCCAGGAGGACAACAAGTATGGTGGAATCGATCCCAAAACAGGCGAA
TGGAATGGCATGTTGCGTGAGATAATTGACAGTCGCGCTGACATGGGCAT
TACGGATCTGACCATGACATCGGAACGAGAGAGCGGAGTCGACTTCACCA
TACCCTTTATGAGTCTGGGAATCGGCATCCTCTTTCGCAAACCGATGAAG
GAGCCACCGAAGCTGTTCTCCTTCATGTCCCCGTTTTCAGGAGAGGTTTG
GCTCTGGCTGGGTCTGGCCTACATGGGCGTATCCATCAGCATGTTCGTGC
TGGGAAGGCTATCTCCGGCGGAGTGGGACAATCCGTATCCCTGCATTGAG
GAGCCAACGGAATTGGAGAATCAGTTTAGTTTCGCCAACTGTCTATGGTT
CTCCATAGGTGCTCTACTTCAGCAAGGATCTGAACTGGCTCCCAAGGCTT
ACTCCACTCGGGCCGTGGCCGCTTCCTGGTGGTTCTTCACATTGATTTTG
GTCTCCTCTTACACTGCTAATCTGGCGGCTTTCCTCACTGTAGAGTCTTT
GGTAACGCCCATCAATGATGCGGATGACCTATCGAAGAACAAGGGCGGTG
TAAACTACGGGGCCAAAATTGGGGGAGCTACCTTTAACTTCTTTAAGGAA
TCAAACTATCCCACCTACCAGCGGATGTACGAGTTCATGAGGGATAATCC
CCAGTACATGACCAACACCAACCAGGAGGGAGTTGATCGCGTGGAGAACT
CCAACTACGCCTTTCTCATGGAGTCCACCACCATTGAGTATATCACAGAG
CGCCGATGCACGCTCACTCAGGTGGGAGCATTGCTGGACGAGAAGGGATA
CGGGATAGCCATGCGAAAGAACTGGCCGTACAGGGACACGTTGAGCCAGG
CTGTTCTAGAGATGCAGGAGCAGGGTCTGCTGACCAAGATGAAGACCAAG
TGGTGGCAGGAGAAGCGCGGCGGGGGAGCTTGTTCGGTAAGTGATCAGCC
TAATCTCAATCTCTGGCAGCTCGTGCATGTGTGGGTGTGTGCAGGACGCG
GACGAGGACTCTGGCGCCGTGGCCCTGGAGATTAGAAGCTTTCTAGACCA
T

BS10349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 2469 CG5621-PA 1..2469 17..2485 12345 100 Plus
CG5621-RD 2721 CG5621-PD 1..2371 17..2387 11855 100 Plus
CG5621-RC 2724 CG5621-PC 1..2371 17..2387 11855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 3640 CG5621-RA 161..2629 17..2485 12345 100 Plus
CG5621-RD 3008 CG5621-RD 161..2531 17..2387 11855 100 Plus
CG5621-RC 3011 CG5621-RC 161..2531 17..2387 11855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20902687..20903294 289..896 3040 100 Plus
3R 32079331 3R 20906150..20906432 1564..1846 1400 99.6 Plus
3R 32079331 3R 20906746..20906974 2042..2270 1130 99.6 Plus
3R 32079331 3R 20903973..20904195 1054..1276 1115 100 Plus
3R 32079331 3R 20907038..20907252 2271..2485 1075 100 Plus
3R 32079331 3R 20904279..20904485 1277..1483 1035 100 Plus
3R 32079331 3R 20906496..20906698 1846..2048 1015 100 Plus
3R 32079331 3R 20902424..20902588 125..289 825 100 Plus
3R 32079331 3R 20903476..20903634 896..1054 795 100 Plus
3R 32079331 3R 20902116..20902226 17..127 555 100 Plus
3R 32079331 3R 20905928..20906013 1484..1569 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:33:50 has no hits.

BS10349.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:57 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1..2469 17..2485 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:20 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 115..2597 5..2490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:05 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 161..2629 17..2485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:37 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 123..2591 17..2485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:53 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 161..2629 17..2485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:53 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20906496..20906697 1846..2047 100 -> Plus
3R 20906752..20906974 2048..2270 100 -> Plus
3R 20907038..20907252 2271..2485 100   Plus
3R 20902116..20902224 17..125 100 -> Plus
3R 20902425..20902588 126..289 100 -> Plus
3R 20902688..20903294 290..896 100 -> Plus
3R 20903477..20903634 897..1054 100 -> Plus
3R 20903974..20904195 1055..1276 100 -> Plus
3R 20904279..20904485 1277..1483 100 -> Plus
3R 20905928..20906012 1484..1568 100 -> Plus
3R 20906155..20906431 1569..1845 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:05 Download gff for BS10349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16727838..16727946 17..125 100 -> Plus
arm_3R 16728147..16728310 126..289 100 -> Plus
arm_3R 16728410..16729016 290..896 100 -> Plus
arm_3R 16729199..16729356 897..1054 100 -> Plus
arm_3R 16729696..16729917 1055..1276 100 -> Plus
arm_3R 16730001..16730207 1277..1483 100 -> Plus
arm_3R 16731650..16731734 1484..1568 100 -> Plus
arm_3R 16731877..16732153 1569..1845 100 -> Plus
arm_3R 16732218..16732419 1846..2047 100 -> Plus
arm_3R 16732474..16732696 2048..2270 100 -> Plus
arm_3R 16732760..16732974 2271..2485 100   Plus

BS10349.pep Sequence

Translation from 16 to 2484

> BS10349.pep
MWFVKMISTEASFPLGFILTSLLLAFPGCRGERTNVGLVYENTDPDLEKI
FHLAISKANEENEDLQLHGVSVSIEPGNSFETSKKLCKMLRQNLVAVFGP
TSNLAARHAMSICDAKELPFLDTRWDFGAQLPTINLHPHPATLGVALRDM
VVALGWESFTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELDLNGNYR
NVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWH
TMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTN
SMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLN
GLTGPIRFDYEGLRTDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPAH
SLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDE
LSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTM
TSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGL
AYMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGAL
LQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPIN
DADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTN
TNQEGVDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMR
KNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSVSDQPNLNLW
QLVHVWVCAGRGRGLWRRGPGD*

BS10349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PA 822 CG5621-PA 1..822 1..822 4348 100 Plus
CG5621-PC 907 CG5621-PC 1..794 1..794 4166 99.6 Plus
CG5621-PD 906 CG5621-PD 1..790 1..790 4160 100 Plus
GluRIIE-PB 897 CG31201-PB 37..805 32..796 1969 50.5 Plus
GluRIID-PA 902 CG18039-PA 25..796 25..790 1942 49.3 Plus