Clone Sequence Records
BS10352.3prime Sequence
707 bp (599 high quality bases) assembled on 2006-04-19
> BS10352.3prime
ATGGTCTAGAAAGCTTTCAGTAGATTATATCCATGCGATAGGGATCACAG
GGATTGGGTGCTTTTCCGCGCCGGGGCATCTCAGTGATTGGTATTGGTGG
AACGGCCAGGAGCATTTTGCGCTTCCTTTCATTGTCCTTTAGGCCATCGT
CTCCGACAAAGCCACCTTTGGGTGGTCTAGGTCTTTTGTCCTTGCCCTCC
TGCGGATTCCAGGGACGGACCAGAGTACCCTTCTTCTGCAGATACTTGAT
CATATTAATGCCCTTCTTCTTCGCATCCACAGCGGCCTTCTCCGCCTCCT
TGGCGGCCTTGGCTGCCTCCTCGGCTGGCTTGAGGAATCTCTTCGGATAG
CGTACTGGTATAGGTTCGGATTTTTCTCCTTTTCCTTTGCCTTGGCCTTG
GGCCTTTCCGACGGCTGCGGTAGGAAAGCCCTTCCAGGCACCACCTCCAG
GTCCTCCTCCAGGTCCGCCGGGTCCTCTAAAGCCACCGCCGCCAGCTCCT
CCGCCTCTGGCTGACCTTCCGCCACCTAAGACTCCTCGAGCGCCCCCGCC
TCCTCCGATTCCTCCGCCATCCCCTCCTGCGCCAACGCCCCAAGCTCCTG
GCACTCGGGGTCTGCCGCAAGGCATTGGATTTGGGGCCATGTGGTCCGCC
ACCCATCATTCCAAATACGCCATCCTCGAAGACCATTTCTCCCGGCCATC
CGAATGC
BS10352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-PA | 3075 | CG14355-RA | 2461..3075 | 631..17 | 3075 | 100 | Minus |
| CG14355-PA | 3075 | CG14355-RA | 2386..2462 | 707..631 | 385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3292 | CG14355-RA | 2527..3217 | 707..16 | 3435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14148583..14149273 | 16..707 | 3410 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:37:29 has no hits.
BS10352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:17 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-PA | 2386..3075 | 17..707 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:10 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-PA | 2386..3075 | 17..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:43 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 2527..3225 | 9..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:51 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 2527..3225 | 9..707 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:51 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14148575..14149273 | 9..707 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:43 Download gff for
BS10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9974297..9974995 | 9..707 | 99 | | Plus |
BS10352.5prime Sequence
869 bp (784 high quality bases) assembled on 2006-04-19
> BS10352.5prime
GAAGTTATCAGTCGACATGGGACCCAAAAAGAAGTCCGTTGCTGTAGCTA
TTGCAGAAACTAAACCAGAAGACCAACCACCACCTGAAAAGGTGAAGCCA
AAGAAAGAGCCCATCCCCGTTTTCGTATTCGATGTTATAGTCACCCATTT
GGAGGCCAAAAATACCGAGTTCACCAATCCATCGAAGCTAGAAGTCACAG
CAAACTTCTTCAAAACTCCACTTCTCCTCACCAATAGTCAGATAAATGTT
AGCGATTTCAAGGCGAATGCCGGTCTCTCCCTTCAAAAGGATCCAAAGGA
AATTCGTAAGACAGTTAACGATTGTGGGATATCCTTCAGCGTGGTGTACA
GCAAGAAGGTGATTGGCTCCGGGCAGGCATCGTTCCCCTCCAGCGTAGTG
GACTCCATAGAAAAGGACATGACCGATATTCTTCACTCGGACGTCATTGA
TTTGGCTGCAGGCGGCGAGGTGACCGGCAAACTGGAGTTCCTTTGCCGGT
TGGTCGTCATGTGCATTGCTGATGAGCCTGAGCTCGAGTGCGCCCGTAAC
ATGGACAGGAGCATCAATGCACAGGATATTATGTTCGTAATGGGTGAATC
GCAGGTGTGTCCCAGTGCCTGTGAACCCTGTCAAAATGATTTGGAAGCGG
AGGAAGGCGACGAGCGGCTCAGACTGGACCTGGAACGATATCGCAGCCAG
GGTGGTGGTATAAAGCCATACAATATGATGACGAACAACGCATCTGGGAT
ACCAGCGTGTTGTGAACTTAAGAAAATGGCAATCGAGTACGAGCGGATGA
TTGATTCCATCACCAAACAGACCGGCATGCCGCCTCCCAAGCCTCCGTGT
CGTAGTCCCGACGAGGCGA
BS10352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-PA | 3075 | CG14355-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3292 | CG14355-RA | 137..994 | 12..869 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14151294..14151804 | 522..12 | 2540 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14150963..14151212 | 772..523 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 14150806..14150904 | 869..771 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:23:54 has no hits.
BS10352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:18 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:12 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:14 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 131..993 | 2..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:16 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 131..993 | 2..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:16 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14150807..14150902 | 773..868 | 100 | <- | Minus |
| 3R | 14150963..14151212 | 523..772 | 100 | <- | Minus |
| 3R | 14151294..14151810 | 2..522 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:14 Download gff for
BS10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9976529..9976624 | 773..868 | 100 | <- | Minus |
| arm_3R | 9976685..9976934 | 523..772 | 100 | <- | Minus |
| arm_3R | 9977016..9977532 | 2..522 | 99 | | Minus |
BS10352.complete Sequence
3107 bp assembled on 2007-11-30
GenBank Submission: FJ638832
> BS10352.complete
GAAGTTATCAGTCGACATGGGACCCAAAAAGAAGTCCGTTGCTGTAGCTA
TTGCAGAAACTAAACCAGAAGACCAACCACCACCTGAAAAGGTGAAGCCA
AAGAAAGAGCCCATCCCCGTTTTCGTATTCGATGTTATAGTCACCCATTT
GGAGGCCAAAAATACCGAGTTCACCAATCCATCGAAGCTAGAAGTCACAG
CAAACTTCTTCAAAACTCCACTTCTCCTCACCAATAGTCAGATAAATGTT
AGCGATTTCAAGGCGAATGCCGGTCTCTCCCTTCAAAAGGATCCAAAGGA
AATTCGTAAGACAGTTAACGATTGTGGGATATCCTTCAGCGTGGTGTACA
GCAAGAAGGTGATTGGCTCCGGGCAGGCATCGTTCCCCTCCAGCGTAGTG
GACTCCATAGAAAAGGACATGACCGATATTCTTCACTCGGACGTCATTGA
TTTGGCTGCAGGCGGCGAGGTGACCGGCAAACTGGAGTTCCTTTGCCGGT
TGGTCGTCATGTGCATTGCTGATGAGCCTGAGCTCGAGTGCGCCCGTAAC
ATGGACAGGAGCATCAATGCACAGGATATTATGTTCGTAATGGGTGAATC
GCAGGTGTGTCCCAGTGCCTGTGAACCCTGTCAAAATGATTTGGAAGCGG
AGGAAGGCGACGAGCGGCTCAGACTGGACCTGGAACGATATCGCAGCCAG
GGTGGTGGTATAAAGCCATACAATATGATGACGAACAACGCATCTGGGAT
ACCAGCGTGTTGTGAACTTAAGAAAATGGCAATCGAGTACGAGCGGATGA
TTGATTCCATCACCAAACAGACCGGCATGCCGCCTCCCAAGCCTCCGTGT
CGTAGTCCCGACGAGGCGAACAACTTTGGCATGAACCCCTGTTGGTGCCA
ACCTGAACTTCCTCAATTTCTTGAGCTGCCCGAGAAACCGGACAAGCCAT
GCTTCGTTTACCTGCCCGCCACCCAAGATCACGAGCCGGACTTCTGCGAG
AAGAACCTAATGCCGGTTCCCATTGCGGACTGCGATGGACAGAAGCCGGA
AATCAAGCCCATCCGCTTTTGTCCGGTCTGCCTGACCAATATGTCGTGGC
TGCCGAAGTTTGCAGCGTGTCCGAAGTGTGGAATCAAACCGATGCCCGTG
GTGGAGGATAGGCACAAGGAGAAGAAGGTATCGGCCGACCAGATCCTGCT
CGAGTACTTGGGCAAAGGACCATCCACTGTGGATGACTACTGCACGGATC
CGTGTGAAAAGGCCAAAAAAGATAGAGCCGACGATGATGAGTGTCCACCA
TGCCGTTGCAGCTGCAAGTTCGGTAAAATGTGTGCCCACTGTCGCATCCG
AAAGATGTGCGCCGATATATTTAAGAGCGATCAGGTGACTCCCAAGTGTC
CAAAAGTGGAGCCAAAGGAATCGGAGGACTACTGTGTGGTAAACAAAAGC
TCCGAGGACTGTCGACCCTATTTGGCCAAAGTTTTCTCCGAGTTGCGCGA
TCTCTACGATATCAAGGACACCAAGAAGTTATCCGAACTGGACGAGAACT
GCGATCGAGCGGTGCCCAAAACGGAGAAGCCTGAGAAACAAGAACCCAAA
AAGGAGAACCAAGCTCCCAAGAAACCACCTTATATACCACCTAACAACAA
GGGTCATATTTCCAGCAGACACAAGCGATGTGTCCTTCGATCGGGATTTG
TGTCCCGACAACATGGTTGGGCCTGGAGCAACAGCTGGGAGGCCAAAAAG
CTGGGCTGGCGTCCGGGTGCCATCCGTAAGCCCATCAAGAAACTGATGAA
GTTCTTCCTGGAGCAACCTGCCAGAGAGAATGCATTTGCCAAATGCAAGG
ACACGGAGACTTTGGAGCGAGAAAAGGAGCTGGCCTCACCGGTGTTGAAT
ATCTGCAAGAAGAACGGAGAGATCTTCATCACCCTGCGTCCTCTTTCTCC
CTTGGGTATGCGCCAGAAACCCATCACTTTCCGGATTGTGAAGAGCGAAA
TGGCAGTGGCCCTGCGTGAGATCAAGAGAAAACTGAAGGATAAGGGATTC
CGCAAGTGCACCTGTCACCAGACATTGATGATGTGCCGTTGCAGGGATCC
CACCGAAAAGGTTCATCTGCAGAGGGCTTTAAACAGGGAATGCCGACGTC
ATTGCATTCCACCGGCTGGCGACCATCTGGTGCTCACAGATACCAGCGAA
AGCGACATGGAGTTTGACTTTGATGTCACTCCGCCAGCAGGTACGGAGCA
ACCATGCCAGCCGCCTTTGCCGGATACCGTTAACCATGGCACCCAGACAT
CCAAGAAAGACCAGATGCCACTACCTCCAAAGTATCCCATCCGAATTCCA
CCTTATTACAGAGGTTTCGACTGCGCTGTGGGCGATCGCTACATGGGTAC
GGCATTCGGATGGCCGGGAGAAATGGTCTTCGAGGATGGCGTATTTGGAA
TGATGGGTGGCGGACCACATGGCCCCAATCCAATGCCTTGCGGCAGACCC
CGAGTGCCAGGAGCTTGGGGCGTTGGCGCAGGAGGGGATGGCGGAGGAAT
CGGAGGAGGCGGGGGCGCTCGAGGAGTCTTAGGTGGCGGAAGGTCAGCCA
GAGGCGGAGGAGCTGGCGGCGGTGGCTTTAGAGGACCCGGCGGACCTGGA
GGAGGACCTGGAGGTGGTGCCTGGAAGGGCTTTCCTACCGCAGCCGTCGG
AAAGGCCCAAGGCCAAGGCAAAGGAAAAGGAGAAAAATCCGAACCTATAC
CAGTACGCTATCCGAAGAGATTCCTCAAGCCAGCCGAGGAGGCAGCCAAG
GCCGCCAAGGAGGCGGAGAAGGCCGCTGTGGATGCGAAGAAGAAGGGCAT
TAATATGATCAAGTATCTGCAGAAGAAGGGTACTCTGGTCCGTCCCTGGA
ATCCGCAGGAGGGCAAGGACAAAAGACCTAGACCACCCAAAGGTGGCTTT
GTCGGAGACGATGGCCTAAAGGACAATGAAAGGAAGCGCAAAATGCTCCT
GGCCGTTCCACCAATACCAATCACTGAGATGCCCCGGCGCGGAAAAGCAC
CCAATCCCTGTGATCCCTATCGCATGGATATAATCTACTGAAAGCTTTCT
AGACCAT
BS10352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3075 | CG14355-PA | 1..3075 | 17..3091 | 15375 | 100 | Plus |
| CG31533-RA | 2535 | CG31533-PA | 1846..1980 | 1952..2086 | 240 | 78.5 | Plus |
| CG31327-RA | 2586 | CG31327-PA | 1843..1962 | 1898..2017 | 210 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3292 | CG14355-RA | 137..3217 | 12..3092 | 15390 | 100 | Plus |
| CG31533-RA | 2704 | CG31533-RA | 1986..2120 | 1952..2086 | 240 | 78.5 | Plus |
| CG31327-RA | 2719 | CG31327-RA | 1939..2058 | 1898..2017 | 210 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14148583..14150904 | 3092..771 | 11610 | 100 | Minus |
| 3R | 32079331 | 3R | 14151294..14151804 | 522..12 | 2540 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14150963..14151212 | 772..523 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 14155312..14155446 | 2086..1952 | 240 | 78.5 | Minus |
| 3R | 32079331 | 3R | 14158221..14158340 | 2017..1898 | 210 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:42 has no hits.
BS10352.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:00 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 1..3075 | 17..3091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:22 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 190..3284 | 2..3099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:53:35 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 142..3215 | 17..3090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:00 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 201..3274 | 17..3090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:08 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 142..3215 | 17..3090 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:08 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14148585..14150902 | 773..3090 | 100 | <- | Minus |
| 3R | 14150963..14151212 | 523..772 | 100 | <- | Minus |
| 3R | 14151294..14151799 | 17..522 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:53:35 Download gff for
BS10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9974307..9976624 | 773..3090 | 100 | <- | Minus |
| arm_3R | 9976685..9976934 | 523..772 | 100 | <- | Minus |
| arm_3R | 9977016..9977521 | 17..522 | 100 | | Minus |
BS10352.pep Sequence
Translation from 16 to 3090
> BS10352.pep
MGPKKKSVAVAIAETKPEDQPPPEKVKPKKEPIPVFVFDVIVTHLEAKNT
EFTNPSKLEVTANFFKTPLLLTNSQINVSDFKANAGLSLQKDPKEIRKTV
NDCGISFSVVYSKKVIGSGQASFPSSVVDSIEKDMTDILHSDVIDLAAGG
EVTGKLEFLCRLVVMCIADEPELECARNMDRSINAQDIMFVMGESQVCPS
ACEPCQNDLEAEEGDERLRLDLERYRSQGGGIKPYNMMTNNASGIPACCE
LKKMAIEYERMIDSITKQTGMPPPKPPCRSPDEANNFGMNPCWCQPELPQ
FLELPEKPDKPCFVYLPATQDHEPDFCEKNLMPVPIADCDGQKPEIKPIR
FCPVCLTNMSWLPKFAACPKCGIKPMPVVEDRHKEKKVSADQILLEYLGK
GPSTVDDYCTDPCEKAKKDRADDDECPPCRCSCKFGKMCAHCRIRKMCAD
IFKSDQVTPKCPKVEPKESEDYCVVNKSSEDCRPYLAKVFSELRDLYDIK
DTKKLSELDENCDRAVPKTEKPEKQEPKKENQAPKKPPYIPPNNKGHISS
RHKRCVLRSGFVSRQHGWAWSNSWEAKKLGWRPGAIRKPIKKLMKFFLEQ
PARENAFAKCKDTETLEREKELASPVLNICKKNGEIFITLRPLSPLGMRQ
KPITFRIVKSEMAVALREIKRKLKDKGFRKCTCHQTLMMCRCRDPTEKVH
LQRALNRECRRHCIPPAGDHLVLTDTSESDMEFDFDVTPPAGTEQPCQPP
LPDTVNHGTQTSKKDQMPLPPKYPIRIPPYYRGFDCAVGDRYMGTAFGWP
GEMVFEDGVFGMMGGGPHGPNPMPCGRPRVPGAWGVGAGGDGGGIGGGGG
ARGVLGGGRSARGGGAGGGGFRGPGGPGGGPGGGAWKGFPTAAVGKAQGQ
GKGKGEKSEPIPVRYPKRFLKPAEEAAKAAKEAEKAAVDAKKKGINMIKY
LQKKGTLVRPWNPQEGKDKRPRPPKGGFVGDDGLKDNERKRKMLLAVPPI
PITEMPRRGKAPNPCDPYRMDIIY*
BS10352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-PA | 1024 | CG14355-PA | 1..1024 | 1..1024 | 5602 | 100 | Plus |
| CG31533-PA | 844 | CG31533-PA | 7..801 | 36..835 | 1570 | 41.6 | Plus |
| CG31327-PA | 861 | CG31327-PA | 12..822 | 36..839 | 1420 | 38.2 | Plus |
| CG31029-PA | 905 | CG31029-PA | 5..844 | 36..791 | 621 | 26.2 | Plus |
| Ppi1-PA | 998 | CG31025-PA | 83..851 | 16..791 | 600 | 27.6 | Plus |
