Clone Sequence Records
BS10353.5prime Sequence
616 bp (562 high quality bases) assembled on 2006-04-19
> BS10353.5prime
GAAGTTATCAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTC
GATTGCAGTGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACA
AGCAAATCGTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAA
TATGTCCATGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGC
GTGGTGACAGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTG
GGGTCCATTTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTG
GCCCAATCCCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGG
AGGCTCGCGAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGC
GACGACGTACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGC
TGAAGTGCTGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGT
TCGACGATCACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGT
CTTGCCATTCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGC
ACAGTTCTGCGGTCAT
BS10353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3054-PA | 4350 | l(2)k05819-RA | 969..1569 | 16..616 | 3005 | 100 | Plus |
CG3054-PB | 3381 | l(2)k05819-RB | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k05819-RD | 5201 | CG3054-RD | 1111..1711 | 16..616 | 3005 | 100 | Plus |
l(2)k05819-RC | 4819 | CG3054-RC | 1111..1711 | 16..616 | 3005 | 100 | Plus |
l(2)k05819-RA | 4864 | CG3054-RA | 1111..1711 | 16..616 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4395418..4395952 | 16..550 | 2675 | 100 | Plus |
2L | 23513712 | 2L | 4396009..4396077 | 548..616 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:04:39 has no hits.
BS10353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:19 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3054-PA | 969..1569 | 16..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:14 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3054-PA | 969..1569 | 16..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:37 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1111..1711 | 16..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:30 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1111..1711 | 16..616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:30 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4396010..4396077 | 549..616 | 100 | | Plus |
2L | 4395409..4395950 | 11..548 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:37 Download gff for
BS10353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4395409..4395950 | 11..548 | 98 | -> | Plus |
arm_2L | 4396010..4396077 | 549..616 | 100 | | Plus |
BS10353.complete Sequence
3413 bp assembled on 2010-07-15
GenBank Submission: KX800620
> BS10353.complete
GAAGTTATCAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTC
GATTGCAGTGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACA
AGCAAATCGTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAA
TATGTCCATGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGC
GTGGTGACAGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTG
GGGTCCATTTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTG
GCCCAATCCCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGG
AGGCTCGCGAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGC
GACGACGTACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGC
TGAAGTGCTGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGT
TCGACGATCACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGT
CTTGCCATTCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGC
ACAGTTCTGCGGTCATGTAACCGCGGTGGCTATGCTCGACAAAGATCTGG
TACCTGTGACTAATCGGTATGCGTATGCACTCATTGAGTCCAGTAAAAGC
TTTTTGCATGGACGCTGCCTTTGCGAACTGGCCAAACAGATTGGATTCAC
CGACCATGCCACTGATCGGTTCGCGCTGGAGGGTCAATTGGCTAGCTATC
GCCACTTGCAACCTGATGTTGTGCGAAGGGACATTCGTTTCGCCCGGCAG
CTCCAGCTGTCCTCCAAGGTGAAGGTCCCATTCCCGCACTCTTTGTCTGT
GGTCATGCGCGAGAATCCAGGCGGCTATTTATCACTTTTCACCCAGGGAA
CAGCAGACATTATACTGGACTGCTGCGATGACTTTTGGGACGGCATTGAT
CTGCGACCATTGTCCGCACAGGATCGCAAGCGTGCACTGGACTTTTATCA
GCGCAGCGCGCTGACGTCCTATTGTACAGCGTTTGCCTATCGACCTCTAA
GGCACGGCATCCATGGAGCCCTTAGCGGTCCTCAACGGAGTGGAGGTGAC
TGTTTGTATCTGGAGCTACCGCCGGAGTCAAAGCTGCGCATGCAGCACGT
GGACAAGACCCATTGCGACTTCCAGGGCGGACATCACGTCAAGCTGAGCC
ACAGCATTAGCACGGACTCATTGCTATTTTCGGAGAACAAGGACGAGGAG
TGTAACGATGTGGAGGGCTGCTTCGAGATGCAGTGCCATCAGGTATTCAT
CGGCATGGTGACAATGCAGTACCAGGCGCAAAACGATATCGTACGACTCG
TTGAGCATCTCGAACAGGCCTGCATACGCTTTGTTCACTTTAGCAAAGAA
AACGAACTGCGCTCGCGTGTCTTCTCTGAGAAAATGGGTCTAGAGTCCGG
ATGGAACTGCCACATCTCGCTACTGAGCGAACCTGAGCCGGATAGTGAAA
AGGAGCGGATAAGTGCCAAGCCAAAGGAGTTCCCGGAAAATATTGGTAAA
CCCCAAGCCACCACCTCAACCACTGCCACCACCACTACAACAGACCATGA
GAACAACCATCATCCCAGTGCCAAAGTCATGTACATATCGCCCCCCGCAC
CCGCACCTGCCACTGCATCTGTATCCGAATCCATATCTGCAGCTAAAACC
ACTGAAATTGTAGGTGACGGCCCAGAAATTAGTTATCTCTTGGGACCGCC
AAACAATCTGGAGTCGTCAAAGACCCTGAGCTCTTCAGCTCCTGGTGCCA
TTTCCAATCCGGATGAGAATCCACTTAACGCCCTCAATAGTGGGGATTCC
CATTCACCTGATAGCGAGGGCAGTAAGGAGAGCTCTCAGGATAGCTGCAC
AAAGAATAACCCACCAGGCGATTCTGAGTTGGAGGCGGAAACCGAGGCGA
ACAAGCACAAGCAGCGCCATTCGCTGGACTCTGCCATGGACGAAAACTGC
CGTTCGTTGAGCACACTCACTGAAAGCACGGATCAGAGTGCACCCATCAA
CTTCGATATGTCAAATAGGGCAAAGCTGCCAAGGGGCATTGAAAACATTC
GGCCGCATTTGGAACAGGTTGACAATGTCCCACTGCAAGTATCGCTTTTT
ACGGACTGCTCAGCGGAAGCCACGCGTCAGATGCTGGACATCATGCAATC
CTACGGCGAGATTGTTGTCTGCCTTGGAAGTTCGGCCAGTAATGCCAATG
CGGACATTTTTCTGCAGGCCGACTGTAGTATAGCCGTGGAGCCGTTGTAT
CCGCAAGTGTGCCAGGATGTGGACGCGTACACGGAAGCCAATATCCAGAA
CAACAAACTGTTGTGGCAGCGGCATTCCGGCAAGTCAAAGGGAAACGATG
ATGAGGAGCTTCTGGAGGGCGGCCTTCATGGATGCGCCATGCAGTCGCCA
GCTCACACCATCTCGCCACTGTACTTAAGCCGGCTGCTCAACTCTCTGCC
CTGTTCCATTGCCGTTTGCCGCGACGACCCGCTTTCGCTGGTGGCCATAA
TTGAGCTTTCACGTCGATTCTCTCTGGGCCTGTGGAACTGCATCCAGTAC
TGGGCTTGCTGCGCAGGCTCTATCTCCATTCTGAACGTGCTGTGCGCGTG
CCTCTCGCAACCCCCGCTCGTAACGCCGCTGCTCGGCATTTATCTGATGT
GTGTGCCGGTGCCGCTAATAGCCATTTCGCTAGCACACATCGACGTGGAT
CCCAAAATCATGAATCGGGCAACAAGCAAAAAGCAGACGGACTATGATTC
TCGCGCCTTTGCCTTTGTCATGTGGTGCTACGGCTGCAAGTTTATTGTAC
TGGTCGTGTCTCTGCTTGTTTCCTATTGGATGCTCTTACCAAACACCCAA
TTAAATCCCGCTGAACCAGCCACTGAGGAACCCGTGTTGGAAATCGACGA
TGATGACGACCCGGAGTTTTATCAATTTCTTTACATTGCTAGAAGCTCTG
CGCTGCTAGGCATAATCCTACACTTCGTTTTCATTTCTGTCACCTTTGTG
CATCGAGACCACGCGCTCTGGCAGCGCAATCCATTTACCAATCGTATTTG
GGCTTTTACATGTTTGTTCTTAGTCCTCATCCATGGTATTATTTGCTTTG
TGCAACTGCTGCTGGAGGATTTCTGGGTTCAGCTGCCCAACCAGTGGTTG
GCCTTGTTAATCTTATTTGGTGGCAGCTTGCTGAGTATGCTCGTCAGCGA
GCTGGCGAAATTCCAGGAGAACAAGGTTAACGCGCGCTATCAGCGTCGGG
CTCGTCTTGACTTCGGTACCAAATTGGGCATGAATTCGCCCTTCTAAAAG
CTTTCTAGACCAT
BS10353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k05819-RA | 4350 | CG3054-PA | 969..4350 | 16..3397 | 16895 | 100 | Plus |
l(2)k05819-RD | 4305 | CG3054-PD | 1619..4305 | 711..3397 | 13420 | 100 | Plus |
l(2)k05819-RC | 4305 | CG3054-PC | 1619..4305 | 711..3397 | 13420 | 100 | Plus |
l(2)k05819-RD | 4305 | CG3054-PD | 969..1619 | 16..666 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k05819-RA | 4864 | CG3054-RA | 1111..4492 | 16..3397 | 16895 | 100 | Plus |
l(2)k05819-RD | 5201 | CG3054-RD | 1761..4447 | 711..3397 | 13420 | 100 | Plus |
l(2)k05819-RC | 4819 | CG3054-RC | 1761..4447 | 711..3397 | 13420 | 100 | Plus |
l(2)k05819-RD | 5201 | CG3054-RD | 1111..1761 | 16..666 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4396968..4399074 | 808..2914 | 10535 | 100 | Plus |
2L | 23513712 | 2L | 4395418..4395952 | 16..550 | 2675 | 100 | Plus |
2L | 23513712 | 2L | 4399353..4399601 | 3077..3325 | 1245 | 100 | Plus |
2L | 23513712 | 2L | 4396009..4396172 | 548..711 | 820 | 100 | Plus |
2L | 23513712 | 2L | 4399136..4399299 | 2914..3077 | 820 | 100 | Plus |
2L | 23513712 | 2L | 4396809..4396906 | 711..808 | 490 | 100 | Plus |
2L | 23513712 | 2L | 4399661..4399733 | 3325..3397 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:31:00 has no hits.
BS10353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:05 Download gff for
BS10353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RB | 120..3498 | 17..3395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:43 Download gff for
BS10353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1112..4490 | 17..3395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:24 Download gff for
BS10353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k05819-RA | 1112..4490 | 17..3395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:24 Download gff for
BS10353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4399354..4399600 | 3078..3324 | 100 | -> | Plus |
2L | 4399661..4399731 | 3325..3395 | 98 | | Plus |
2L | 4395419..4395950 | 17..548 | 100 | -> | Plus |
2L | 4396010..4396172 | 549..711 | 100 | -> | Plus |
2L | 4396810..4396906 | 712..808 | 100 | -> | Plus |
2L | 4396969..4399074 | 809..2914 | 100 | -> | Plus |
2L | 4399137..4399299 | 2915..3077 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:43 Download gff for
BS10353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4395419..4395950 | 17..548 | 100 | -> | Plus |
arm_2L | 4396010..4396172 | 549..711 | 100 | -> | Plus |
arm_2L | 4396810..4396906 | 712..808 | 100 | -> | Plus |
arm_2L | 4396969..4399074 | 809..2914 | 100 | -> | Plus |
arm_2L | 4399137..4399299 | 2915..3077 | 100 | -> | Plus |
arm_2L | 4399354..4399600 | 3078..3324 | 100 | -> | Plus |
arm_2L | 4399661..4399731 | 3325..3395 | 98 | | Plus |
BS10353.pep Sequence
Translation from 16 to 3396
> BS10353.pep
MWISMNLWGIARLQCFLKTPQAALEKSTSKSFEEDLDTPSYDYQNMSMLR
SSVLRIWMQLWRGDSELLPRSANLVQVLGSISALCCVDKKGILSWPNPTA
EKVFFLHNTDEEAREDGAGSQSSSQSESDDVPVVDEDHKERGIVAEVLDL
THDQHCPFRLEFDDHEWKAHIKSLKPLGLAILLNTCSPLTHEHYAQFCGH
VTAVAMLDKDLVPVTNRYAYALIESSKSFLHGRCLCELAKQIGFTDHATD
RFALEGQLASYRHLQPDVVRRDIRFARQLQLSSKVKVPFPHSLSVVMREN
PGGYLSLFTQGTADIILDCCDDFWDGIDLRPLSAQDRKRALDFYQRSALT
SYCTAFAYRPLRHGIHGALSGPQRSGGDCLYLELPPESKLRMQHVDKTHC
DFQGGHHVKLSHSISTDSLLFSENKDEECNDVEGCFEMQCHQVFIGMVTM
QYQAQNDIVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNCHI
SLLSEPEPDSEKERISAKPKEFPENIGKPQATTSTTATTTTTDHENNHHP
SAKVMYISPPAPAPATASVSESISAAKTTEIVGDGPEISYLLGPPNNLES
SKTLSSSAPGAISNPDENPLNALNSGDSHSPDSEGSKESSQDSCTKNNPP
GDSELEAETEANKHKQRHSLDSAMDENCRSLSTLTESTDQSAPINFDMSN
RAKLPRGIENIRPHLEQVDNVPLQVSLFTDCSAEATRQMLDIMQSYGEIV
VCLGSSASNANADIFLQADCSIAVEPLYPQVCQDVDAYTEANIQNNKLLW
QRHSGKSKGNDDEELLEGGLHGCAMQSPAHTISPLYLSRLLNSLPCSIAV
CRDDPLSLVAIIELSRRFSLGLWNCIQYWACCAGSISILNVLCACLSQPP
LVTPLLGIYLMCVPVPLIAISLAHIDVDPKIMNRATSKKQTDYDSRAFAF
VMWCYGCKFIVLVVSLLVSYWMLLPNTQLNPAEPATEEPVLEIDDDDDPE
FYQFLYIARSSALLGIILHFVFISVTFVHRDHALWQRNPFTNRIWAFTCL
FLVLIHGIICFVQLLLEDFWVQLPNQWLALLILFGGSLLSMLVSELAKFQ
ENKVNARYQRRARLDFGTKLGMNSPF*
BS10353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k05819-PA | 1449 | CG3054-PA | 324..1449 | 1..1126 | 5952 | 100 | Plus |
l(2)k05819-PD | 1434 | CG3054-PD | 324..1434 | 1..1126 | 5850 | 98.7 | Plus |
l(2)k05819-PC | 1434 | CG3054-PC | 324..1434 | 1..1126 | 5850 | 98.7 | Plus |