Clone BS10353 Report

Search the DGRC for BS10353

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k05819-RB
Protein status:BS10353.pep: full length peptide match
Sequenced Size:3413

Clone Sequence Records

BS10353.5prime Sequence

616 bp (562 high quality bases) assembled on 2006-04-19

> BS10353.5prime
GAAGTTATCAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTC
GATTGCAGTGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACA
AGCAAATCGTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAA
TATGTCCATGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGC
GTGGTGACAGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTG
GGGTCCATTTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTG
GCCCAATCCCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGG
AGGCTCGCGAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGC
GACGACGTACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGC
TGAAGTGCTGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGT
TCGACGATCACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGT
CTTGCCATTCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGC
ACAGTTCTGCGGTCAT

BS10353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3054-PA 4350 l(2)k05819-RA 969..1569 16..616 3005 100 Plus
CG3054-PB 3381 l(2)k05819-RB 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k05819-RD 5201 CG3054-RD 1111..1711 16..616 3005 100 Plus
l(2)k05819-RC 4819 CG3054-RC 1111..1711 16..616 3005 100 Plus
l(2)k05819-RA 4864 CG3054-RA 1111..1711 16..616 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4395418..4395952 16..550 2675 100 Plus
2L 23513712 2L 4396009..4396077 548..616 345 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:04:39 has no hits.

BS10353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:19 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3054-PA 969..1569 16..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:14 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3054-PA 969..1569 16..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:37 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k05819-RA 1111..1711 16..616 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:30 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k05819-RA 1111..1711 16..616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:30 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4396010..4396077 549..616 100   Plus
2L 4395409..4395950 11..548 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:37 Download gff for BS10353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4395409..4395950 11..548 98 -> Plus
arm_2L 4396010..4396077 549..616 100   Plus

BS10353.complete Sequence

3413 bp assembled on 2010-07-15

GenBank Submission: KX800620

> BS10353.complete
GAAGTTATCAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTC
GATTGCAGTGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACA
AGCAAATCGTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAA
TATGTCCATGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGC
GTGGTGACAGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTG
GGGTCCATTTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTG
GCCCAATCCCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGG
AGGCTCGCGAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGC
GACGACGTACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGC
TGAAGTGCTGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGT
TCGACGATCACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGT
CTTGCCATTCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGC
ACAGTTCTGCGGTCATGTAACCGCGGTGGCTATGCTCGACAAAGATCTGG
TACCTGTGACTAATCGGTATGCGTATGCACTCATTGAGTCCAGTAAAAGC
TTTTTGCATGGACGCTGCCTTTGCGAACTGGCCAAACAGATTGGATTCAC
CGACCATGCCACTGATCGGTTCGCGCTGGAGGGTCAATTGGCTAGCTATC
GCCACTTGCAACCTGATGTTGTGCGAAGGGACATTCGTTTCGCCCGGCAG
CTCCAGCTGTCCTCCAAGGTGAAGGTCCCATTCCCGCACTCTTTGTCTGT
GGTCATGCGCGAGAATCCAGGCGGCTATTTATCACTTTTCACCCAGGGAA
CAGCAGACATTATACTGGACTGCTGCGATGACTTTTGGGACGGCATTGAT
CTGCGACCATTGTCCGCACAGGATCGCAAGCGTGCACTGGACTTTTATCA
GCGCAGCGCGCTGACGTCCTATTGTACAGCGTTTGCCTATCGACCTCTAA
GGCACGGCATCCATGGAGCCCTTAGCGGTCCTCAACGGAGTGGAGGTGAC
TGTTTGTATCTGGAGCTACCGCCGGAGTCAAAGCTGCGCATGCAGCACGT
GGACAAGACCCATTGCGACTTCCAGGGCGGACATCACGTCAAGCTGAGCC
ACAGCATTAGCACGGACTCATTGCTATTTTCGGAGAACAAGGACGAGGAG
TGTAACGATGTGGAGGGCTGCTTCGAGATGCAGTGCCATCAGGTATTCAT
CGGCATGGTGACAATGCAGTACCAGGCGCAAAACGATATCGTACGACTCG
TTGAGCATCTCGAACAGGCCTGCATACGCTTTGTTCACTTTAGCAAAGAA
AACGAACTGCGCTCGCGTGTCTTCTCTGAGAAAATGGGTCTAGAGTCCGG
ATGGAACTGCCACATCTCGCTACTGAGCGAACCTGAGCCGGATAGTGAAA
AGGAGCGGATAAGTGCCAAGCCAAAGGAGTTCCCGGAAAATATTGGTAAA
CCCCAAGCCACCACCTCAACCACTGCCACCACCACTACAACAGACCATGA
GAACAACCATCATCCCAGTGCCAAAGTCATGTACATATCGCCCCCCGCAC
CCGCACCTGCCACTGCATCTGTATCCGAATCCATATCTGCAGCTAAAACC
ACTGAAATTGTAGGTGACGGCCCAGAAATTAGTTATCTCTTGGGACCGCC
AAACAATCTGGAGTCGTCAAAGACCCTGAGCTCTTCAGCTCCTGGTGCCA
TTTCCAATCCGGATGAGAATCCACTTAACGCCCTCAATAGTGGGGATTCC
CATTCACCTGATAGCGAGGGCAGTAAGGAGAGCTCTCAGGATAGCTGCAC
AAAGAATAACCCACCAGGCGATTCTGAGTTGGAGGCGGAAACCGAGGCGA
ACAAGCACAAGCAGCGCCATTCGCTGGACTCTGCCATGGACGAAAACTGC
CGTTCGTTGAGCACACTCACTGAAAGCACGGATCAGAGTGCACCCATCAA
CTTCGATATGTCAAATAGGGCAAAGCTGCCAAGGGGCATTGAAAACATTC
GGCCGCATTTGGAACAGGTTGACAATGTCCCACTGCAAGTATCGCTTTTT
ACGGACTGCTCAGCGGAAGCCACGCGTCAGATGCTGGACATCATGCAATC
CTACGGCGAGATTGTTGTCTGCCTTGGAAGTTCGGCCAGTAATGCCAATG
CGGACATTTTTCTGCAGGCCGACTGTAGTATAGCCGTGGAGCCGTTGTAT
CCGCAAGTGTGCCAGGATGTGGACGCGTACACGGAAGCCAATATCCAGAA
CAACAAACTGTTGTGGCAGCGGCATTCCGGCAAGTCAAAGGGAAACGATG
ATGAGGAGCTTCTGGAGGGCGGCCTTCATGGATGCGCCATGCAGTCGCCA
GCTCACACCATCTCGCCACTGTACTTAAGCCGGCTGCTCAACTCTCTGCC
CTGTTCCATTGCCGTTTGCCGCGACGACCCGCTTTCGCTGGTGGCCATAA
TTGAGCTTTCACGTCGATTCTCTCTGGGCCTGTGGAACTGCATCCAGTAC
TGGGCTTGCTGCGCAGGCTCTATCTCCATTCTGAACGTGCTGTGCGCGTG
CCTCTCGCAACCCCCGCTCGTAACGCCGCTGCTCGGCATTTATCTGATGT
GTGTGCCGGTGCCGCTAATAGCCATTTCGCTAGCACACATCGACGTGGAT
CCCAAAATCATGAATCGGGCAACAAGCAAAAAGCAGACGGACTATGATTC
TCGCGCCTTTGCCTTTGTCATGTGGTGCTACGGCTGCAAGTTTATTGTAC
TGGTCGTGTCTCTGCTTGTTTCCTATTGGATGCTCTTACCAAACACCCAA
TTAAATCCCGCTGAACCAGCCACTGAGGAACCCGTGTTGGAAATCGACGA
TGATGACGACCCGGAGTTTTATCAATTTCTTTACATTGCTAGAAGCTCTG
CGCTGCTAGGCATAATCCTACACTTCGTTTTCATTTCTGTCACCTTTGTG
CATCGAGACCACGCGCTCTGGCAGCGCAATCCATTTACCAATCGTATTTG
GGCTTTTACATGTTTGTTCTTAGTCCTCATCCATGGTATTATTTGCTTTG
TGCAACTGCTGCTGGAGGATTTCTGGGTTCAGCTGCCCAACCAGTGGTTG
GCCTTGTTAATCTTATTTGGTGGCAGCTTGCTGAGTATGCTCGTCAGCGA
GCTGGCGAAATTCCAGGAGAACAAGGTTAACGCGCGCTATCAGCGTCGGG
CTCGTCTTGACTTCGGTACCAAATTGGGCATGAATTCGCCCTTCTAAAAG
CTTTCTAGACCAT

BS10353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k05819-RA 4350 CG3054-PA 969..4350 16..3397 16895 100 Plus
l(2)k05819-RD 4305 CG3054-PD 1619..4305 711..3397 13420 100 Plus
l(2)k05819-RC 4305 CG3054-PC 1619..4305 711..3397 13420 100 Plus
l(2)k05819-RD 4305 CG3054-PD 969..1619 16..666 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k05819-RA 4864 CG3054-RA 1111..4492 16..3397 16895 100 Plus
l(2)k05819-RD 5201 CG3054-RD 1761..4447 711..3397 13420 100 Plus
l(2)k05819-RC 4819 CG3054-RC 1761..4447 711..3397 13420 100 Plus
l(2)k05819-RD 5201 CG3054-RD 1111..1761 16..666 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4396968..4399074 808..2914 10535 100 Plus
2L 23513712 2L 4395418..4395952 16..550 2675 100 Plus
2L 23513712 2L 4399353..4399601 3077..3325 1245 100 Plus
2L 23513712 2L 4396009..4396172 548..711 820 100 Plus
2L 23513712 2L 4399136..4399299 2914..3077 820 100 Plus
2L 23513712 2L 4396809..4396906 711..808 490 100 Plus
2L 23513712 2L 4399661..4399733 3325..3397 350 98.6 Plus
Blast to na_te.dros performed on 2014-11-28 04:31:00 has no hits.

BS10353.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:05 Download gff for BS10353.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k05819-RB 120..3498 17..3395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:43 Download gff for BS10353.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k05819-RA 1112..4490 17..3395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:24 Download gff for BS10353.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k05819-RA 1112..4490 17..3395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:24 Download gff for BS10353.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4399354..4399600 3078..3324 100 -> Plus
2L 4399661..4399731 3325..3395 98   Plus
2L 4395419..4395950 17..548 100 -> Plus
2L 4396010..4396172 549..711 100 -> Plus
2L 4396810..4396906 712..808 100 -> Plus
2L 4396969..4399074 809..2914 100 -> Plus
2L 4399137..4399299 2915..3077 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:43 Download gff for BS10353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4395419..4395950 17..548 100 -> Plus
arm_2L 4396010..4396172 549..711 100 -> Plus
arm_2L 4396810..4396906 712..808 100 -> Plus
arm_2L 4396969..4399074 809..2914 100 -> Plus
arm_2L 4399137..4399299 2915..3077 100 -> Plus
arm_2L 4399354..4399600 3078..3324 100 -> Plus
arm_2L 4399661..4399731 3325..3395 98   Plus

BS10353.pep Sequence

Translation from 16 to 3396

> BS10353.pep
MWISMNLWGIARLQCFLKTPQAALEKSTSKSFEEDLDTPSYDYQNMSMLR
SSVLRIWMQLWRGDSELLPRSANLVQVLGSISALCCVDKKGILSWPNPTA
EKVFFLHNTDEEAREDGAGSQSSSQSESDDVPVVDEDHKERGIVAEVLDL
THDQHCPFRLEFDDHEWKAHIKSLKPLGLAILLNTCSPLTHEHYAQFCGH
VTAVAMLDKDLVPVTNRYAYALIESSKSFLHGRCLCELAKQIGFTDHATD
RFALEGQLASYRHLQPDVVRRDIRFARQLQLSSKVKVPFPHSLSVVMREN
PGGYLSLFTQGTADIILDCCDDFWDGIDLRPLSAQDRKRALDFYQRSALT
SYCTAFAYRPLRHGIHGALSGPQRSGGDCLYLELPPESKLRMQHVDKTHC
DFQGGHHVKLSHSISTDSLLFSENKDEECNDVEGCFEMQCHQVFIGMVTM
QYQAQNDIVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNCHI
SLLSEPEPDSEKERISAKPKEFPENIGKPQATTSTTATTTTTDHENNHHP
SAKVMYISPPAPAPATASVSESISAAKTTEIVGDGPEISYLLGPPNNLES
SKTLSSSAPGAISNPDENPLNALNSGDSHSPDSEGSKESSQDSCTKNNPP
GDSELEAETEANKHKQRHSLDSAMDENCRSLSTLTESTDQSAPINFDMSN
RAKLPRGIENIRPHLEQVDNVPLQVSLFTDCSAEATRQMLDIMQSYGEIV
VCLGSSASNANADIFLQADCSIAVEPLYPQVCQDVDAYTEANIQNNKLLW
QRHSGKSKGNDDEELLEGGLHGCAMQSPAHTISPLYLSRLLNSLPCSIAV
CRDDPLSLVAIIELSRRFSLGLWNCIQYWACCAGSISILNVLCACLSQPP
LVTPLLGIYLMCVPVPLIAISLAHIDVDPKIMNRATSKKQTDYDSRAFAF
VMWCYGCKFIVLVVSLLVSYWMLLPNTQLNPAEPATEEPVLEIDDDDDPE
FYQFLYIARSSALLGIILHFVFISVTFVHRDHALWQRNPFTNRIWAFTCL
FLVLIHGIICFVQLLLEDFWVQLPNQWLALLILFGGSLLSMLVSELAKFQ
ENKVNARYQRRARLDFGTKLGMNSPF*

BS10353.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k05819-PA 1449 CG3054-PA 324..1449 1..1126 5952 100 Plus
l(2)k05819-PD 1434 CG3054-PD 324..1434 1..1126 5850 98.7 Plus
l(2)k05819-PC 1434 CG3054-PC 324..1434 1..1126 5850 98.7 Plus