Clone Sequence Records
BS10361.3prime Sequence
860 bp (799 high quality bases) assembled on 2006-04-19
> BS10361.3prime
ATGGTCTAGAAAGCTTTCAGAACTTACTCTGTTCCATGACGCTGCTAATC
GAATTGTTGATCTCGGCCACCACAACGATCTCCTCGTTCTCCTCCGTCTC
CTCGGGCACCATCATCAGATTGTTGTTCATCAGATAGTTTTCCATGCGGT
GATCACCCATTCCGCCCTCACCGGTGGTGCTCGTCCTCAATCGGTGGGTG
AACGACGATCGTGATCGGGTCATGTACGATGATCTGGTCGTGGAGACCCT
TCGCAGCACTCCGCGTCCGTAGAAGAGCATTCGCACCTCGACACGAAACC
GCGGATGGGTGGCCGCATACAAGTAGGGATCCACGCAGGCAGCTGTCTTG
CAGAAGAGCGCGGGTATCATCGATCCCAGTGGCGTTATGTGCCTCTCCAG
GCCGAAGACACCCATCATGGCAACGATGGCGTACGGTGACCAGGCCAGGA
ACCACAAACCAATGATAGCCGCCACAATGAAGGCCAACTTCTGCTCCGTC
TTGGCCTTATCCTTGTTCGATTGTATTCGACTCGCTGTGAAGACCACCTT
CAGTATATAGAAGTAGGAGTACACAATGGAGGTCAGTGGAATGCAGTAGG
CAGCCACAAAGAACAGTGCCATGAAAATGCGAGCTGGCATCTCCTTGTTC
AGATAATCGAAGCTGCAGGTGGTGAGGAAGCCCTCTGGCACATAGACAGA
TAGTCCGATATCCAGGGCCGGCATCACAGCGAACAGGAAGCTGTAGCACC
AGATCAGCAGGATGATCAGGTAGGATCGCAGGCGGGAGCAGCGTCTCAGC
GGTTGCAGTGGATGCACCACCACATTGTACCGATCCAAAGCGATGGCGGT
GAGGGTACCG
BS10361.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5638-PA | 1452 | Rh7-RA | 609..1452 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 1394..2242 | 860..12 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12165977..12166825 | 12..860 | 4230 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:32:41 has no hits.
BS10361.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:33 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-PA | 609..1452 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:33 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5638-PA | 609..1452 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:28:44 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 1394..2242 | 12..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:05:13 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 1394..2242 | 12..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:05:13 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12165977..12166825 | 12..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:28:44 Download gff for
BS10361.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159077..12159925 | 12..860 | 99 | | Plus |
BS10361.5prime Sequence
947 bp (798 high quality bases) assembled on 2006-04-19
> BS10361.5prime
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGCCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAAGGTGGTCTTC
BS10361.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5638-PA | 1452 | Rh7-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 785..1715 | 16..947 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12166504..12166875 | 947..575 | 1815 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12167238..12167565 | 575..248 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 12168142..12168375 | 249..16 | 1170 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 7088..7134 | 514..560 | 109 | 70.2 | Plus |
BS10361.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:37:34 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:57:35 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5638-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:52:50 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..1715 | 10..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:12 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..1715 | 10..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:12 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12166504..12166874 | 576..947 | 99 | <- | Minus |
| 3L | 12167238..12167563 | 250..575 | 100 | <- | Minus |
| 3L | 12168142..12168380 | 11..249 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:52:50 Download gff for
BS10361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159604..12159974 | 576..947 | 99 | <- | Minus |
| arm_3L | 12160338..12160663 | 250..575 | 100 | <- | Minus |
| arm_3L | 12161242..12161480 | 11..249 | 98 | <- | Minus |
BS10361.complete Sequence
1484 bp (1484 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636636
> BS10361.complete
GAAGTTATCAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACC
TGACAACGGATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCG
CTCTCCGAGATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCAC
AACCTCGACGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAG
GCAAGGACCACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGC
AATTACAGTAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCT
GAGCTACATTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTA
AGTCGAGCACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTG
GTGGGATGTGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAA
ATCTCTGCGGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCG
ACTTTCTGATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAA
GAGGGTCCAGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGG
TGGCCTAAGTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGG
ATCGGTACAATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCC
CGCCTGCGATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCT
GTTCGCTGTGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAG
AGGGCTTCCTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCA
GCTCGCATTTTCATGGCACTGTTCTTTGTGGCTGCCTACTGCATTCCACT
GACCTCCATTGTGTACTCCTACTTCTATATACTGAAGGTGGTCTTCACAG
CGAGTCGAATACAATCGAACAAGGATAAGGCCAAGACGGAGCAGAAGTTG
GCCTTCATTGTGGCGGCTATCATTGGTTTGTGGTTCCTGGCCTGGTCACC
GTACGCCATCGTTGCCATGATGGGTGTCTTCGGCCTGGAGAGGCACATAA
CGCCACTGGGATCGATGATACCCGCGCTCTTCTGCAAGACAGCTGCCTGC
GTGGATCCCTACTTGTATGCGGCCACCCATCCGCGGTTTCGTGTCGAGGT
GCGAATGCTCTTCTACGGACGCGGAGTGCTGCGAAGGGTCTCCACGACCA
GATCATCGTACATGACCCGATCACGATCGTCGTTCACCCACCGATTGAGG
ACGAGCACCACCGGTGAGGGCGGAATGGGTGATCACCGCATGGAAAACTA
TCTGATGAACAACAATCTGATGATGGTGCCCGAGGAGACGGAGGAGAACG
AGGAGATCGTTGTGGTGGCCGAGATCAACAATTCGATTAGCAGCGTCATG
GAACAGAGTAAGTTCTGAAAGCTTTCTAGACCAT
BS10361.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 1452 | CG5638-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 785..2242 | 16..1473 | 7275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12165977..12166875 | 1473..575 | 4480 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12167238..12167565 | 575..248 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 12168142..12168375 | 249..16 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:49 has no hits.
BS10361.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:20 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 1..1452 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:29 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..2242 | 10..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:20 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 786..2236 | 17..1467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:20 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 778..2242 | 10..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:17 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 786..2236 | 17..1467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:17 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12165983..12166874 | 576..1467 | 100 | <- | Minus |
| 3L | 12167238..12167563 | 250..575 | 100 | <- | Minus |
| 3L | 12168142..12168374 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:20 Download gff for
BS10361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159083..12159974 | 576..1467 | 100 | <- | Minus |
| arm_3L | 12160338..12160663 | 250..575 | 100 | <- | Minus |
| arm_3L | 12161242..12161474 | 17..249 | 100 | | Minus |
BS10361.pep Sequence
Translation from 16 to 1467
> BS10361.pep
MEAIIMTTLPNLTTDAGDSSFWLTGALSLSEMLANSSHSHSTGSTTSTAG
SSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDKYDLSYIAK
VNPFWLQFEPPKSSTFLIMAALYCLISVVGCVGNAFVIFMFANRKSLRTP
ANILVMNLAICDFLMLIKCPIAIYNNIKEGPALGDIACRLYGFVGGLSGT
CAIGTLTAIALDRYNVVVHPLQPLRRCSRLRSYLIILLIWCYSFLFAVMP
ALDIGLSVYVPEGFLTTCSFDYLNKEMPARIFMALFFVAAYCIPLTSIVY
SYFYILKVVFTASRIQSNKDKAKTEQKLAFIVAAIIGLWFLAWSPYAIVA
MMGVFGLERHITPLGSMIPALFCKTAACVDPYLYAATHPRFRVEVRMLFY
GRGVLRRVSTTRSSYMTRSRSSFTHRLRTSTTGEGGMGDHRMENYLMNNN
LMMVPEETEENEEIVVVAEINNSISSVMEQSKF*
BS10361.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-PA | 483 | CG5638-PA | 1..483 | 1..483 | 2499 | 100 | Plus |
| Rh3-PA | 383 | CG10888-PA | 47..350 | 105..396 | 567 | 37.7 | Plus |
| Rh4-PA | 378 | CG9668-PA | 43..370 | 105..420 | 547 | 35.5 | Plus |
| Rh5-PB | 382 | CG5279-PB | 12..362 | 68..414 | 508 | 33.4 | Plus |
| Rh5-PA | 382 | CG5279-PA | 12..362 | 68..414 | 508 | 33.4 | Plus |
