Clone BS10385 Report

Search the DGRC for BS10385

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG11448-RA
Protein status:BS10385.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10385.3prime Sequence

900 bp (887 high quality bases) assembled on 2006-04-19

> BS10385.3prime
ATGGTCTAGAAAGCTTTTACTTCGCCGCTGCGGAGGCGGAAACGGAACCG
GGCGTGGCCGACAGCGCCATCTTGGAGAGCGTGGCCAAGGAACGTTTCGG
GAACGTGTTGCTGCCGTCCGACGGGTCCGAGAACAGCTTCCGGAAGAATT
TGCGTATTCCCGACTCGGAGCTCTTCTTCCAGGGCGCATCGTCCGGCTCG
TAGGGCAAAGGGCCCTGCACGGGCGCATCGTGTCCAGGTGGCGTTTCTCC
GGCCGCTGGTGGCTCCAGCTCGTTCGCCTCGGCAGCCGCCTCCTCCTCGT
CGTCGTCATCATCGTTGTCCGCCACGTGACCATCGTCGTCCTCATCGCTA
TCGTCGGAGCTGGAGAAGTGACGCTGCCGCTTGCCCTTCGCCTGGCTTGG
TGGCTTCAGCTCCGCCAGCTGCTCGTTGAGGGTGTCGATGGTGGTCAGCA
GCTCATCGCGCTCGCTAATCAACTCTTTCAGCTCGCGCGTGGTGTACCGC
GGCCGGTTGGGATCGTTCTGGCCATCGTCGTACGAGGCCACCAAATCCTC
ATTCTCCTTTTCGGCCAGGCCCAATCGCTTGCGCAGTTGGTTGATCTCCC
GGCTCTGGTCCTGCAGCTGGGCAAGAAAGTCGGCGCGCTCCTCGCACAGC
GTCTTCACTTGGGCCTGCATCAGCTTGTGGCGGCGCCGGGTATCTCGCTC
TGATGCCTTCAGACGCTCCGCCTGGATATTGAGGTGCTCCAGCTCGCTGT
ACTTGTCCTGCAGCTCACGCTCGCGGTGCTTCAACTCGTCGCGCTGCTTG
TATATCTGCTCCTTCAGCCGTTGCAGCACTTGAGTATCCGAAAGAGCGCT
GTGCAGCTCGTGGTTGGTCATGCTGATAATGCTCTCGGTGAGACTGGGCC

BS10385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 1332 CG11448-RA 452..1332 897..17 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 3784 CG11448-RA 942..1822 897..17 4405 100 Minus
CG11448-RC 3603 CG11448-RC 942..1818 897..21 4385 100 Minus
CG11448-RB 3799 CG11448-RB 942..1837 897..17 4245 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1394224..1394715 733..242 2460 100 Minus
X 23542271 X 1393995..1394158 897..734 820 100 Minus
X 23542271 X 1395246..1395375 146..17 650 100 Minus
X 23542271 X 1395098..1395193 242..147 480 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:53:33 has no hits.

BS10385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:23 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 449..1332 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:39 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 449..1332 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:59 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 939..1824 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:13 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 939..1824 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:13 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1393992..1394158 734..900 99 -> Minus
X 1394224..1394714 243..733 100 -> Minus
X 1395098..1395193 147..242 100 -> Minus
X 1395246..1395377 13..146 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:59 Download gff for BS10385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1288025..1288191 734..900 99 -> Minus
arm_X 1288257..1288747 243..733 100 -> Minus
arm_X 1289131..1289226 147..242 100 -> Minus
arm_X 1289279..1289410 13..146 98   Minus

BS10385.5prime Sequence

803 bp (800 high quality bases) assembled on 2006-04-19

> BS10385.5prime
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCG

BS10385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 1332 CG11448-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RC 3603 CG11448-RC 491..1277 17..803 3935 100 Plus
CG11448-RB 3799 CG11448-RB 491..1277 17..803 3935 100 Plus
CG11448-RA 3784 CG11448-RA 491..1277 17..803 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1393544..1394158 17..631 3075 100 Plus
X 23542271 X 1394224..1394395 632..803 860 100 Plus
Blast to na_te.dros performed 2015-02-12 06:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3133..3169 326..361 110 81.1 Plus

BS10385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:24 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 1..787 17..803 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:41 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-PA 1..787 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:39:40 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1277 17..803 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:11 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1277 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:11 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1393544..1394158 17..631 100 -> Plus
X 1394224..1394395 632..803 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:39:40 Download gff for BS10385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1287577..1288191 17..631 100 -> Plus
arm_X 1288257..1288428 632..803 100   Plus

BS10385.complete Sequence

1364 bp (1364 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636637

> BS10385.complete
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCGAAAAGGAGAATGAGGATTTGGTGGCCTCGTACGACGATGGCCAGAAC
GATCCCAACCGGCCGCGGTACACCACGCGCGAGCTGAAAGAGTTGATTAG
CGAGCGCGATGAGCTGCTGACCACCATCGACACCCTCAACGAGCAGCTGG
CGGAGCTGAAGCCACCAAGCCAGGCGAAGGGCAAGCGGCAGCGTCACTTC
TCCAGCTCCGACGATAGCGATGAGGACGACGATGGTCACGTGGCGGACAA
CGATGATGACGACGACGAGGAGGAGGCGGCTGCCGAGGCGAACGAGCTGG
AGCCACCAGCGGCCGGAGAAACGCCACCTGGACACGATGCGCCCGTGCAG
GGCCCTTTGCCCTACGAGCCGGACGATGCGCCCTGGAAGAAGAGCTCCGA
GTCGGGAATACGCAAATTCTTCCGGAAGCTGTTCTCGGACCCGTCGGACG
GCAGCAACACGTTCCCGAAACGTTCCTTGGCCACGCTCTCCAAGATGGCG
CTGTCGGCCACGCCCGGTTCCGTTTCCGCCTCCGCAGCGGCGAAGTAAAA
GCTTTCTAGACCAT

BS10385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 1332 CG11448-PA 1..1332 17..1348 6660 100 Plus
CG11448-RC 1461 CG11448-PC 1..1328 17..1344 6640 100 Plus
CG11448-RB 1347 CG11448-PB 1..1347 17..1348 6475 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 3784 CG11448-RA 491..1822 17..1348 6660 100 Plus
CG11448-RC 3603 CG11448-RC 491..1818 17..1344 6640 100 Plus
CG11448-RB 3799 CG11448-RB 491..1837 17..1348 6475 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1393544..1394158 17..631 3075 100 Plus
X 23542271 X 1394224..1394715 632..1123 2460 100 Plus
X 23542271 X 1395246..1395375 1219..1348 650 100 Plus
X 23542271 X 1395098..1395193 1123..1218 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:51:57 has no hits.

BS10385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:06 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 17..1348 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:33 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 480..1813 17..1352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:13 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1820 17..1346 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:06 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 480..1813 17..1352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:28 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 491..1820 17..1346 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:28 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
X 1395098..1395193 1123..1218 100 -> Plus
X 1395246..1395373 1219..1346 100   Plus
X 1393544..1394158 17..631 100 -> Plus
X 1394224..1394714 632..1122 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:13 Download gff for BS10385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1289279..1289406 1219..1346 100   Plus
arm_X 1289131..1289226 1123..1218 100 -> Plus
arm_X 1287577..1288191 17..631 100 -> Plus
arm_X 1288257..1288747 632..1122 100 -> Plus

BS10385.pep Sequence

Translation from 16 to 1347

> BS10385.pep
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAK*

BS10385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 443 CG11448-PA 1..443 1..443 2239 100 Plus
CG11448-PC 486 CG11448-PC 1..442 1..442 2234 100 Plus
CG11448-PB 448 CG11448-PB 1..448 1..443 2223 98.9 Plus