Clone Sequence Records
BS10385.3prime Sequence
900 bp (887 high quality bases) assembled on 2006-04-19
> BS10385.3prime
ATGGTCTAGAAAGCTTTTACTTCGCCGCTGCGGAGGCGGAAACGGAACCG
GGCGTGGCCGACAGCGCCATCTTGGAGAGCGTGGCCAAGGAACGTTTCGG
GAACGTGTTGCTGCCGTCCGACGGGTCCGAGAACAGCTTCCGGAAGAATT
TGCGTATTCCCGACTCGGAGCTCTTCTTCCAGGGCGCATCGTCCGGCTCG
TAGGGCAAAGGGCCCTGCACGGGCGCATCGTGTCCAGGTGGCGTTTCTCC
GGCCGCTGGTGGCTCCAGCTCGTTCGCCTCGGCAGCCGCCTCCTCCTCGT
CGTCGTCATCATCGTTGTCCGCCACGTGACCATCGTCGTCCTCATCGCTA
TCGTCGGAGCTGGAGAAGTGACGCTGCCGCTTGCCCTTCGCCTGGCTTGG
TGGCTTCAGCTCCGCCAGCTGCTCGTTGAGGGTGTCGATGGTGGTCAGCA
GCTCATCGCGCTCGCTAATCAACTCTTTCAGCTCGCGCGTGGTGTACCGC
GGCCGGTTGGGATCGTTCTGGCCATCGTCGTACGAGGCCACCAAATCCTC
ATTCTCCTTTTCGGCCAGGCCCAATCGCTTGCGCAGTTGGTTGATCTCCC
GGCTCTGGTCCTGCAGCTGGGCAAGAAAGTCGGCGCGCTCCTCGCACAGC
GTCTTCACTTGGGCCTGCATCAGCTTGTGGCGGCGCCGGGTATCTCGCTC
TGATGCCTTCAGACGCTCCGCCTGGATATTGAGGTGCTCCAGCTCGCTGT
ACTTGTCCTGCAGCTCACGCTCGCGGTGCTTCAACTCGTCGCGCTGCTTG
TATATCTGCTCCTTCAGCCGTTGCAGCACTTGAGTATCCGAAAGAGCGCT
GTGCAGCTCGTGGTTGGTCATGCTGATAATGCTCTCGGTGAGACTGGGCC
BS10385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 1332 | CG11448-RA | 452..1332 | 897..17 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 3784 | CG11448-RA | 942..1822 | 897..17 | 4405 | 100 | Minus |
CG11448-RC | 3603 | CG11448-RC | 942..1818 | 897..21 | 4385 | 100 | Minus |
CG11448-RB | 3799 | CG11448-RB | 942..1837 | 897..17 | 4245 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1394224..1394715 | 733..242 | 2460 | 100 | Minus |
X | 23542271 | X | 1393995..1394158 | 897..734 | 820 | 100 | Minus |
X | 23542271 | X | 1395246..1395375 | 146..17 | 650 | 100 | Minus |
X | 23542271 | X | 1395098..1395193 | 242..147 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:53:33 has no hits.
BS10385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:23 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 449..1332 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:39 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 449..1332 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:59 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 939..1824 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:13 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 939..1824 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:13 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1393992..1394158 | 734..900 | 99 | -> | Minus |
X | 1394224..1394714 | 243..733 | 100 | -> | Minus |
X | 1395098..1395193 | 147..242 | 100 | -> | Minus |
X | 1395246..1395377 | 13..146 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:59 Download gff for
BS10385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1288025..1288191 | 734..900 | 99 | -> | Minus |
arm_X | 1288257..1288747 | 243..733 | 100 | -> | Minus |
arm_X | 1289131..1289226 | 147..242 | 100 | -> | Minus |
arm_X | 1289279..1289410 | 13..146 | 98 | | Minus |
BS10385.5prime Sequence
803 bp (800 high quality bases) assembled on 2006-04-19
> BS10385.5prime
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCG
BS10385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 1332 | CG11448-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RC | 3603 | CG11448-RC | 491..1277 | 17..803 | 3935 | 100 | Plus |
CG11448-RB | 3799 | CG11448-RB | 491..1277 | 17..803 | 3935 | 100 | Plus |
CG11448-RA | 3784 | CG11448-RA | 491..1277 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1393544..1394158 | 17..631 | 3075 | 100 | Plus |
X | 23542271 | X | 1394224..1394395 | 632..803 | 860 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 3133..3169 | 326..361 | 110 | 81.1 | Plus |
BS10385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:24 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:41 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:39:40 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1277 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:11 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1277 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:11 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1393544..1394158 | 17..631 | 100 | -> | Plus |
X | 1394224..1394395 | 632..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:39:40 Download gff for
BS10385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1287577..1288191 | 17..631 | 100 | -> | Plus |
arm_X | 1288257..1288428 | 632..803 | 100 | | Plus |
BS10385.complete Sequence
1364 bp (1364 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636637
> BS10385.complete
GAAGTTATCAGTCGACATGCCCGGCTTTCACCTCAATGAGATGGGTGAAA
TGGTCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTG
GCCTCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCAC
GGACGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGT
TGGAGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAG
CTGCGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGA
GTTCCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGC
GCAGCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAG
AACAAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCA
GAGCTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCA
ACCACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTG
AAGGAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGA
GCTGCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGC
GTCTGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAG
GCCCAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCT
GCAGGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGG
CCGAAAAGGAGAATGAGGATTTGGTGGCCTCGTACGACGATGGCCAGAAC
GATCCCAACCGGCCGCGGTACACCACGCGCGAGCTGAAAGAGTTGATTAG
CGAGCGCGATGAGCTGCTGACCACCATCGACACCCTCAACGAGCAGCTGG
CGGAGCTGAAGCCACCAAGCCAGGCGAAGGGCAAGCGGCAGCGTCACTTC
TCCAGCTCCGACGATAGCGATGAGGACGACGATGGTCACGTGGCGGACAA
CGATGATGACGACGACGAGGAGGAGGCGGCTGCCGAGGCGAACGAGCTGG
AGCCACCAGCGGCCGGAGAAACGCCACCTGGACACGATGCGCCCGTGCAG
GGCCCTTTGCCCTACGAGCCGGACGATGCGCCCTGGAAGAAGAGCTCCGA
GTCGGGAATACGCAAATTCTTCCGGAAGCTGTTCTCGGACCCGTCGGACG
GCAGCAACACGTTCCCGAAACGTTCCTTGGCCACGCTCTCCAAGATGGCG
CTGTCGGCCACGCCCGGTTCCGTTTCCGCCTCCGCAGCGGCGAAGTAAAA
GCTTTCTAGACCAT
BS10385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 1332 | CG11448-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
CG11448-RC | 1461 | CG11448-PC | 1..1328 | 17..1344 | 6640 | 100 | Plus |
CG11448-RB | 1347 | CG11448-PB | 1..1347 | 17..1348 | 6475 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-RA | 3784 | CG11448-RA | 491..1822 | 17..1348 | 6660 | 100 | Plus |
CG11448-RC | 3603 | CG11448-RC | 491..1818 | 17..1344 | 6640 | 100 | Plus |
CG11448-RB | 3799 | CG11448-RB | 491..1837 | 17..1348 | 6475 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1393544..1394158 | 17..631 | 3075 | 100 | Plus |
X | 23542271 | X | 1394224..1394715 | 632..1123 | 2460 | 100 | Plus |
X | 23542271 | X | 1395246..1395375 | 1219..1348 | 650 | 100 | Plus |
X | 23542271 | X | 1395098..1395193 | 1123..1218 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:51:57 has no hits.
BS10385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:06 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 1..1332 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:33 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 480..1813 | 17..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:13 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1820 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:06 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 480..1813 | 17..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:28 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11448-RA | 491..1820 | 17..1346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:28 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1395098..1395193 | 1123..1218 | 100 | -> | Plus |
X | 1395246..1395373 | 1219..1346 | 100 | | Plus |
X | 1393544..1394158 | 17..631 | 100 | -> | Plus |
X | 1394224..1394714 | 632..1122 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:13 Download gff for
BS10385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1289279..1289406 | 1219..1346 | 100 | | Plus |
arm_X | 1289131..1289226 | 1123..1218 | 100 | -> | Plus |
arm_X | 1287577..1288191 | 17..631 | 100 | -> | Plus |
arm_X | 1288257..1288747 | 632..1122 | 100 | -> | Plus |
BS10385.pep Sequence
Translation from 16 to 1347
> BS10385.pep
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAK*
BS10385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11448-PA | 443 | CG11448-PA | 1..443 | 1..443 | 2239 | 100 | Plus |
CG11448-PC | 486 | CG11448-PC | 1..442 | 1..442 | 2234 | 100 | Plus |
CG11448-PB | 448 | CG11448-PB | 1..448 | 1..443 | 2223 | 98.9 | Plus |