Clone BS10386 Report

Search the DGRC for BS10386

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:103
Well:86
Vector:pDNR-Dual
Associated Gene/Transcripthig-RC
Protein status:BS10386.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10386.3prime Sequence

871 bp (794 high quality bases) assembled on 2006-04-19

> BS10386.3prime
ATGGTCTAGAAAGCTTCTACTTACAAAATGGCGGCGAGTGCGACCACTGT
CCGTTCTCCGTGCAGATGATGCTCGACTCGCCCACCAGGCTGTGCCCGTC
GTTGCAGCTAAACGTGACCAGGGCGCCCACGGTGAGGCGCCTCTGGCTCA
GGCTGGTGCCCCCGATGCGCCCGTTGAGCGGCGCCACTGGCATCACGCAC
TGAATGACTTTGCAACGCGGAACGGGGCCACTCCAGACGCCCGACGGCTC
ACAGTCCAGCTGCGCCGGTCCGGTCAGCTTGAAGCCCCACTGGCATTTGA
ACACCGCCCGCCCCCATGCCGAGGTGTTCAGCTCGATCAGGCTGAGGTGC
GGGTCGTCCAGCTCCAGACGTGGACACTGAATGGCATGGCAGGTCGGCGT
CGGCGATGACCAATTGCCGGAGGCCAGGCAGGTGGCGTTCCAGGCGCCGT
CGAGCCGGAAGCCCTCGGGGCACTCGTAGTGCGCCCGCTGGCCCAGCTTA
TTGCCCTCGAGGCGCAGCTTGAGCGGCGCCAGCGGCTCTGTTAGCTGCGG
ACACGTCGAAGTGGCCACCACGACGGCAATGCTGTTGGTCAGTCCGCGCG
GCGAGGTGCAGGTGAAGGTGCCGGAGTCGTTGTTCTCGATATTCTTGATG
CTCAGCCGGTAGCGCACCGCTTTCTCCTCCTGGGCTGGAGACCATCCTGT
AGAATACTGCATGTACCAGCTGGTCCAGCTCCATTCCGGAGTGCCCCTAA
CCCTCGGATACATGCAGTCCATGAGCACTGTGCTGTGCGGCGGAACGGCC
ATGACGCCGGATGGCTCAAAGGAGTGGGAGCCATTGAAGATCTTGATGCG
GATCGATGGGGCGCTGTCCTC

BS10386.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2040-PC 2601 hig-RC 1747..2601 871..17 4275 100 Minus
CG2040-PD 2676 hig-RD 1822..2676 871..17 4275 100 Minus
CG2040-PB 2802 hig-RB 1747..2594 871..24 4240 100 Minus
CG2040-PA 2877 hig-RA 1822..2669 871..24 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
hig-RD 4332 CG2040-RD 2177..3032 871..16 4280 100 Minus
hig-RC 4257 CG2040-RC 2102..2957 871..16 4280 100 Minus
hig-RA 4026 CG2040-RA 2177..3024 871..24 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9229598..9230091 208..701 2470 100 Plus
2R 25286936 2R 9229085..9229278 16..209 970 100 Plus
2R 25286936 2R 9230311..9230486 696..871 880 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:01:31 has no hits.

BS10386.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:25 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2040-PC 1747..2601 17..871 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:42 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2040-PD 1822..2676 17..871 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:43 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
hig-RC 2102..2964 7..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:08 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
hig-RC 2102..2964 7..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:08 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9230312..9230486 697..871 100   Plus
2R 9229078..9229276 7..207 98 <- Plus
2R 9229598..9230086 208..696 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:43 Download gff for BS10386.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5116583..5116781 7..207 98 <- Plus
arm_2R 5117103..5117591 208..696 100 <- Plus
arm_2R 5117817..5117991 697..871 100   Plus

BS10386.5prime Sequence

811 bp (766 high quality bases) assembled on 2006-04-19

> BS10386.5prime
GAAGTTATCAGTCGACATGTGGAGCAGGCAGCGAATGCGCCATAAGCCGC
TTTGGGCCCTAATATCCTTGACCGTTTTGCTGCTGGTCCTGGACAAAAGC
AATGCCAACACGGAGCCCGTCGAGACCAGCACCACATCCGAGCCAGATGC
CTCGCCAGGCTGTCGGGCGCCGGATGTGCGCTTCACGATTGTCAAGCCGG
AAGCGACGACGGAGCAGCCGCTGGCCAAATTCGAGACCACGCAGATCTAC
CTGCCGGAGGACTTCACCACGGCGGATGTGGAGTTCGTGGACTCGGTGCC
GCGTCACCCCAACGAAAACCATGCGGCCGTAATCAATCCGTACTCGCTGG
ACCTGGGCGACGACCACTTGCATGTGGGCGATGCGGCCGCCAGTTTGGTT
GGCGACGATGATCTGGGTGACGAGGACGAGGACCACCACGGGGACCCGGA
GGATAAGCGCTTAAATGCCAATCGCAAGCAGGGCAAACGAAGGCGCGCGG
GCTCAGGCCGTCGGCGGAGGATTGAGAATGAAAATGGACAGACAGGCAGG
GGTCGTGGCAGTCGATATAAGCGGCATGCCATTCTCCATGACACGGAAGC
CTCACCGGAAACGGATCGCTGGGCGGGCAGCAAGCTGGCAGCCGAAGGGG
ATGTGTACTATGTCCACATAGCCGATATCCTGAAGAGCCGTGAGCCAAAT
CGTGAATTGAAATCGAAGCTGCACAAGCTCAAAATGAAGGCCAGACTGAA
CAAGTGCCTGGCGGAAGGTGGCAAGGAGAAGTGCACAAGGCTCCTCAAGA
AGAAGCCCAAG

BS10386.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2040-PB 2802 hig-RB 1..795 17..811 3975 100 Plus
CG2040-PA 2877 hig-RA 1..795 17..811 3975 100 Plus
CG2040-PC 2601 hig-RC 1..795 17..811 3975 100 Plus
CG2040-PD 2676 hig-RD 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
hig-RD 4332 CG2040-RD 353..1150 14..811 3990 100 Plus
hig-RC 4257 CG2040-RC 353..1150 14..811 3990 100 Plus
hig-RA 4026 CG2040-RA 353..1150 14..811 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9234911..9235578 811..144 3340 100 Minus
2R 25286936 2R 9246765..9246897 146..14 665 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:46:03 has no hits.

BS10386.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:26 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2040-PB 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:58:44 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2040-PD 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:25 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
hig-RA 346..1150 7..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:34 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
hig-RA 346..1150 7..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:34 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9234911..9235575 147..811 100 <- Minus
2R 9246765..9246904 7..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:25 Download gff for BS10386.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5122416..5123080 147..811 100 <- Minus
arm_2R 5134270..5134409 7..146 97   Minus

BS10386.complete Sequence

2633 bp assembled on 2007-11-30

GenBank Submission: FJ636638

> BS10386.complete
GAAGTTATCAGTCGACATGTGGAGCAGGCAGCGAATGCGCCATAAGCCGC
TTTGGGCCCTAATATCCTTGACCGTTTTGCTGCTGGTCCTGGACAAAAGC
AATGCCAACACGGAGCCCGTCGAGACCAGCACCACATCCGAGCCAGATGC
CTCGCCAGGCTGTCGGGCGCCGGATGTGCGCTTCACGATTGTCAAGCCGG
AAGCGACGACGGAGCAGCCGCTGGCCAAATTCGAGACCACGCAGATCTAC
CTGCCGGAGGACTTCACCACGGCGGATGTGGAGTTCGTGGACTCGGTGCC
GCGTCACCCCAACGAAAACCATGCGGCCGTAATCAATCCGTACTCGCTGG
ACCTGGGCGACGACCACTTGCATGTGGGCGATGCGGCCGCCAGTTTGGTT
GGCGACGATGATCTGGGTGACGAGGACGAGGACCACCACGGGGACCCGGA
GGATAAGCGCTTAAATGCCAATCGCAAGCAGGGCAAACGAAGGCGCGCGG
GCTCAGGCCGTCGGCGGAGGATTGAGAATGAAAATGGACAGACAGGCAGG
GGTCGTGGCAGTCGATATAAGCGGCATGCCATTCTCCATGACACGGAAGC
CTCACCGGAAACGGATCGCTGGGCGGGCAGCAAGCTGGCAGCCGAAGGGG
ATGTGTACTATGTCCACATAGCCGATATCCTGAAGAGCCGTGAGCCAAAT
CGTGAATTGAAATCGAAGCTGCACAAGCTCAAAATGAAGGCCAGACTGAA
CAAGTGCCTGGCGGAAGGTGGCAAGGAGAAGTGCACAAGGCTCCTCAAGA
AGAAGCCCAAGAAGAAGGTCGTCGAGAAGGAGCAGACCCTGAAGAAGGAG
AAGAAGTTCCCCAAAGAAGAACAGTCCAAGGAAAAGGTACCCGAGAACGG
ACAAACACCAAAGGAGGACGAACTGGAACTGGACCATCCGGAGACCGCTG
CTGCTCATCACCGCCGCCGCGGGGACAGTCACGCTGCAGAGCTCGACCAG
CGTGACCGGAGCCCGCGATGGCGCCGCCGGCGCAGCACCGAGTTCAAGGG
CGATCTCGGCCAGCTGCCACCGGAGTCCGGAATCGGGCCGGAGCCGGAAC
CGCTAGCGGATCAGGATCTAAAGGATCTTCAGCAGTACGGAAATCAGTCG
AGCAGTGCACGAGTGGCCCTGTTGTGGCAACGTGTTAAGCGCAAGTCCGG
CAAGACCACGGGTGCACTGAGCCGTCCGAAGGGTGGTGGCGACTCCAGCT
CCAAGACCACCAGTCGCAAGGACAAGGGTATCTACGACGAGGAGGCTGGC
TACACGCCCATCCATCCAGATGACCCGGAGTTCGACGAGGAGGAGGAGGA
GGACGAGGAGGTCGACATCCTGCAGCAGTTCACCGAAGTGTCGGAGATTC
GCTTCCCGGGCGAAATCGGACCCATGGGCGATCGGCGGCTATGCAAGATC
CGTTGCGTCAAGGGCAAGTGGGTGGGTCCGTTGTGCGCCACCAACGAGGA
GGACGATAATGGGAATGTGAAGTTTCAGCCGCTCTACAAGAGCTGTCACG
TAAACCGGATACCATCGCACTTGCTGCTCAGCTACCGCAACATTTCAGTG
AATGTGGGATGGGATCTGCCGCACGGACACTCTCTGCAGGCACGCTGCCA
GGAGCTGGGCATCTACAAGCTCCTGGGAGAGTCGAGGGTCCTCTGCTCCA
ACGGCCTGTGGGCACCGCGGATGCCCAGCTGCGTCCCCACCACGGTGCTG
ACCAACTACTCGGAGGACAGCGCCCCATCGATCCGCATCAAGATCTTCAA
TGGCTCCCACTCCTTTGAGCCATCCGGCGTCATGGCCGTTCCGCCGCACA
GCACAGTGCTCATGGACTGCATGTATCCGAGGGTTAGGGGCACTCCGGAA
TGGAGCTGGACCAGCTGGTACATGCAGTATTCTACAGGATGGTCTCCAGC
CCAGGAGGAGAAAGCGGTGCGCTACCGGCTGAGCATCAAGAATATCGAGA
ACAACGACTCCGGCACCTTCACCTGCACCTCGCCGCGCGGACTGACCAAC
AGCATTGCCGTCGTGGTGGCCACTTCGACGTGTCCGCAGCTAACAGAGCC
GCTGGCGCCGCTCAAGCTGCGCCTCGAGGGCAATAAGCTGGGCCAGCGGG
CGCACTACGAGTGCCCCGAGGGCTTCCGGCTCGACGGCGCCTGGAACGCC
ACCTGCCTGGCCTCCGGCAATTGGTCATCGCCGACGCCGACCTGCCATGC
CATTCAGTGTCCACGTCTGGAGCTGGACGACCCGCACCTCAGCCTGATCG
AGCTGAACACCTCGGCATGGGGGCGGGCGGTGTTCAAATGCCAGTGGGGC
TTCAAGCTGACCGGACCGGCGCAGCTGGACTGTGAGCCGTCGGGCGTCTG
GAGTGGCCCCGTTCCGCGTTGCAAAGTCATTCAGTGCGTGATGCCAGTGG
CGCCGCTCAACGGGCGCATCGGGGGCACCAGCCTGAGCCAGAGGCGCCTC
ACCGTGGGCGCCCTGGTCACGTTTAGCTGCAACGACGGGCACAGCCTGGT
GGGCGAGTCGAGCATCATCTGCACGGAGAACGGACAGTGGTCGCACTCGC
CGCCATTTTGTAAGTAGAAGCTTTCTAGACCAT

BS10386.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
hig-RC 2601 CG2040-PC 1..2601 17..2617 13005 100 Plus
hig-RB 2802 CG2040-PB 1..2594 17..2610 12970 100 Plus
hig-RD 2676 CG2040-PD 1..1585 17..1601 7925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
hig-RC 4257 CG2040-RC 353..2957 14..2618 13025 100 Plus
hig-RB 3951 CG2040-RB 353..2949 14..2610 12985 100 Plus
hig-RD 4332 CG2040-RD 353..1940 14..1601 7940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9234443..9235578 1279..144 5680 100 Minus
2R 25286936 2R 9229598..9230091 2426..1933 2470 100 Minus
2R 25286936 2R 9230311..9230649 1938..1600 1695 100 Minus
2R 25286936 2R 9232508..9232733 1502..1277 1130 100 Minus
2R 25286936 2R 9229085..9229278 2618..2425 970 100 Minus
2R 25286936 2R 9246765..9246897 146..14 665 100 Minus
2R 25286936 2R 9231748..9231846 1600..1502 495 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:35:33 has no hits.

BS10386.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:03 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
hig-RC 1..2601 17..2617 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:26 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
hig-RC 344..2962 7..2627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:04 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
hig-RC 356..2956 17..2617 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:10 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
hig-RC 354..2954 17..2617 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:20 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
hig-RC 356..2956 17..2617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:20 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9229086..9229276 2427..2617 100 <- Minus
2R 9229598..9230086 1938..2426 100 <- Minus
2R 9230312..9230648 1601..1937 100 <- Minus
2R 9231748..9231845 1503..1600 100 <- Minus
2R 9232508..9232732 1278..1502 100 <- Minus
2R 9234445..9235575 147..1277 100 <- Minus
2R 9246765..9246894 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:04 Download gff for BS10386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5134270..5134399 17..146 100   Minus
arm_2R 5116591..5116781 2427..2617 100 <- Minus
arm_2R 5117103..5117591 1938..2426 100 <- Minus
arm_2R 5117817..5118153 1601..1937 100 <- Minus
arm_2R 5119253..5119350 1503..1600 100 <- Minus
arm_2R 5120013..5120237 1278..1502 100 <- Minus
arm_2R 5121950..5123080 147..1277 100 <- Minus

BS10386.pep Sequence

Translation from 16 to 2616

> BS10386.pep
MWSRQRMRHKPLWALISLTVLLLVLDKSNANTEPVETSTTSEPDASPGCR
APDVRFTIVKPEATTEQPLAKFETTQIYLPEDFTTADVEFVDSVPRHPNE
NHAAVINPYSLDLGDDHLHVGDAAASLVGDDDLGDEDEDHHGDPEDKRLN
ANRKQGKRRRAGSGRRRRIENENGQTGRGRGSRYKRHAILHDTEASPETD
RWAGSKLAAEGDVYYVHIADILKSREPNRELKSKLHKLKMKARLNKCLAE
GGKEKCTRLLKKKPKKKVVEKEQTLKKEKKFPKEEQSKEKVPENGQTPKE
DELELDHPETAAAHHRRRGDSHAAELDQRDRSPRWRRRRSTEFKGDLGQL
PPESGIGPEPEPLADQDLKDLQQYGNQSSSARVALLWQRVKRKSGKTTGA
LSRPKGGGDSSSKTTSRKDKGIYDEEAGYTPIHPDDPEFDEEEEEDEEVD
ILQQFTEVSEIRFPGEIGPMGDRRLCKIRCVKGKWVGPLCATNEEDDNGN
VKFQPLYKSCHVNRIPSHLLLSYRNISVNVGWDLPHGHSLQARCQELGIY
KLLGESRVLCSNGLWAPRMPSCVPTTVLTNYSEDSAPSIRIKIFNGSHSF
EPSGVMAVPPHSTVLMDCMYPRVRGTPEWSWTSWYMQYSTGWSPAQEEKA
VRYRLSIKNIENNDSGTFTCTSPRGLTNSIAVVVATSTCPQLTEPLAPLK
LRLEGNKLGQRAHYECPEGFRLDGAWNATCLASGNWSSPTPTCHAIQCPR
LELDDPHLSLIELNTSAWGRAVFKCQWGFKLTGPAQLDCEPSGVWSGPVP
RCKVIQCVMPVAPLNGRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSI
ICTENGQWSHSPPFCK*

BS10386.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
hig-PC 866 CG2040-PC 1..866 1..866 4668 100 Plus
hig-PB 933 CG2040-PB 1..866 1..866 4668 100 Plus
hig-PD 891 CG2040-PD 1..891 1..866 4632 97.2 Plus
hig-PA 958 CG2040-PA 1..891 1..866 4632 97.2 Plus
CG10186-PA 1676 CG10186-PA 1198..1582 471..865 531 31.1 Plus
hig-PB 933 CG2040-PB 748..928 689..866 177 30.8 Plus
hig-PA 958 CG2040-PA 773..953 689..866 177 30.8 Plus