Clone Sequence Records
BS10401.3prime Sequence
874 bp (813 high quality bases) assembled on 2006-04-19
> BS10401.3prime
ATGGTCTAGAAAGCTTTTAACCCTGGAAGGTGGACATGAACTTGGCAACA
ATGTCCTTCAGCTTGGCATCGGACGCCTCCGAGATAGCACCGTCCTTGGC
GATGGTGTCGAGCAGAGCCTGCTCGGAGGTCTTGATGTGCTGCAAGAACT
CCTTCTCGAACTTGGTGATCTTGGCGGGATCCATCTTGTCCAGATGACCG
CGCACACCGCAGTAGATAACGGCGACCTGATCCTCAATGGCCATGGGCAC
GTACTGACCCTGCTTGAGCAGCTCAGTGAGGCGCACACCACGGTTCAGCA
GCTGCTGGGTGGCGGCATCCAGATCGGAACCGAACTGGGCGAAGGCAGCG
ACCTCACGGTACTGGGCCAACTCCAGCTTCATGGAACCGGCCACCTGCTT
CATGGCCTTGGTCTGGGCAGCGGAACCCACACGGGACACGGACAGACCGA
CGTTAATGGCAGGGCGGATACCCTTGTAGAACAACTCGGTCTCCAAGAAG
ATCTGTCCGTCGGTAATCGAGATGACGTTGGTTGGAATGTAGGCGGACAC
ATCGCCAGCCTGGGTCTCGATCACGGGCAGAGCAGTCAGGGAACCGCCTC
CCATGGCGGGGGACATCTTGGCGGCACGCTCCAGCAGACGCGAATGCAGG
TAGAACACATCACCGGGGTAGGCCTCACGACCTGGGGGACGACGCAGCAA
CAGGGACATCTGACGGTAGGCCACAGCCTGCTTGGACAAATCATCGTAGA
TGATCAGGGCGTGCTTGCCCTTGTCGCGGAAGTACTCTCCCATGGCGCAT
CCGGAGTAGGGGGCCAAGTACTGCAGAGGAGCAGCGTCGGAGGCGGTGGC
CGACACGATCACGGAGTACCCCAT
BS10401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3612-PA | 1659 | blw-RA | 802..1659 | 874..17 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 907..1764 | 874..17 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22800723..22801372 | 874..225 | 3235 | 99.8 | Minus |
2R | 25286936 | 2R | 22801480..22801692 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:24:45 has no hits.
BS10401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:40 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-PA | 802..1659 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:05 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3612-PA | 802..1659 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:55:28 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 907..1766 | 13..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:39 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 907..1766 | 13..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:39 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22800723..22801370 | 227..874 | 99 | -> | Minus |
2R | 22801483..22801694 | 13..226 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:55:28 Download gff for
BS10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18688228..18688875 | 227..874 | 99 | -> | Minus |
arm_2R | 18688988..18689199 | 13..226 | 99 | | Minus |
BS10401.5prime Sequence
888 bp (824 high quality bases) assembled on 2006-04-19
> BS10401.5prime
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGGCCCCCTACT
BS10401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3612-PA | 1659 | blw-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 106..976 | 17..888 | 4335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22799893..22800476 | 80..663 | 2920 | 100 | Plus |
2R | 25286936 | 2R | 22800568..22800788 | 663..883 | 1090 | 99.5 | Plus |
2R | 25286936 | 2R | 22799204..22799271 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:32:47 has no hits.
BS10401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:41 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:07 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3612-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:31 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 98..976 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:07 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 98..976 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:07 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22799196..22799269 | 9..82 | 94 | -> | Plus |
2R | 22799896..22800476 | 83..663 | 100 | -> | Plus |
2R | 22800569..22800792 | 664..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:31 Download gff for
BS10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18686701..18686774 | 9..82 | 94 | -> | Plus |
arm_2R | 18687401..18687981 | 83..663 | 100 | -> | Plus |
arm_2R | 18688074..18688297 | 664..888 | 99 | | Plus |
BS10401.complete Sequence
1691 bp (1691 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636639
> BS10401.complete
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGCCCCCTACTCCGGATGCGCCAT
GGGAGAGTACTTCCGCGACAAGGGCAAGCACGCCCTGATCATCTACGATG
ATTTGTCCAAGCAGGCTGTGGCCTACCGTCAGATGTCCCTGTTGCTGCGT
CGTCCCCCAGGTCGTGAGGCCTACCCCGGTGATGTGTTCTACCTGCATTC
GCGTCTGCTGGAGCGTGCCGCCAAGATGTCCCCCGCCATGGGAGGCGGTT
CCCTGACTGCTCTGCCCGTGATCGAGACCCAGGCTGGCGATGTGTCCGCC
TACATTCCAACCAACGTCATCTCGATTACCGACGGACAGATCTTCTTGGA
GACCGAGTTGTTCTACAAGGGTATCCGCCCTGCCATTAACGTCGGTCTGT
CCGTGTCCCGTGTGGGTTCCGCTGCCCAGACCAAGGCCATGAAGCAGGTG
GCCGGTTCCATGAAGCTGGAGTTGGCCCAGTACCGTGAGGTCGCTGCCTT
CGCCCAGTTCGGTTCCGATCTGGATGCCGCCACCCAGCAGCTGCTGAACC
GTGGTGTGCGCCTCACTGAGCTGCTCAAGCAGGGTCAGTACGTGCCCATG
GCCATTGAGGATCAGGTCGCCGTTATCTACTGCGGTGTGCGCGGTCATCT
GGACAAGATGGATCCCGCCAAGATCACCAAGTTCGAGAAGGAGTTCTTGC
AGCACATCAAGACCTCCGAGCAGGCTCTGCTCGACACCATCGCCAAGGAC
GGTGCTATCTCGGAGGCGTCCGATGCCAAGCTGAAGGACATTGTTGCCAA
GTTCATGTCCACCTTCCAGGGTTAAAAGCTTTCTAGACCAT
BS10401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 1659 | CG3612-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-RA | 2252 | CG3612-RA | 106..1764 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22800568..22801372 | 663..1467 | 4025 | 100 | Plus |
2R | 25286936 | 2R | 22799893..22800476 | 80..663 | 2920 | 100 | Plus |
2R | 25286936 | 2R | 22801480..22801692 | 1463..1675 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 22799204..22799271 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:53:34 has no hits.
BS10401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:07 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 1..1659 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:35 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 143..1811 | 9..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:02 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 106..1762 | 17..1673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:08 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 143..1811 | 9..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:13 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blw-RA | 106..1762 | 17..1673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:13 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22799204..22799269 | 17..82 | 100 | -> | Plus |
2R | 22799896..22800476 | 83..663 | 100 | -> | Plus |
2R | 22800569..22801370 | 664..1465 | 100 | -> | Plus |
2R | 22801483..22801690 | 1466..1673 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:02 Download gff for
BS10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18686709..18686774 | 17..82 | 100 | -> | Plus |
arm_2R | 18687401..18687981 | 83..663 | 100 | -> | Plus |
arm_2R | 18688074..18688875 | 664..1465 | 100 | -> | Plus |
arm_2R | 18688988..18689195 | 1466..1673 | 100 | | Plus |
BS10401.pep Sequence
Translation from 16 to 1674
> BS10401.pep
MSIFSARLASSVARNLPKAANQVACKAAYPAASLAARKLHVASTQRSAEI
SNILEERILGVAPKADLEETGRVLSIGDGIARVYGLNNIQADEMVEFSSG
LKGMALNLEPDNVGVVVFGNDKLIKQGDIVKRTGAIVDVPVGDELLGRVV
DALGNAIDGKGAINTKDRFRVGIKAPGIIPRVSVREPMQTGIKAVDSLVP
IGRGQRELIIGDRQTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQ
KRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLAPYSGCAMGEYFR
DKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER
AAKMSPAMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY
KGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGS
DLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDP
AKITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTF
QG*
BS10401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blw-PA | 552 | CG3612-PA | 1..552 | 1..552 | 2737 | 100 | Plus |
Vha55-PC | 490 | CG17369-PC | 63..390 | 103..425 | 265 | 25.5 | Plus |
Vha55-PA | 490 | CG17369-PA | 63..390 | 103..425 | 265 | 25.5 | Plus |
Vha55-PB | 490 | CG17369-PB | 63..390 | 103..425 | 265 | 25.5 | Plus |
ATPsyn-beta-PC | 511 | CG11154-PC | 1..390 | 3..416 | 252 | 22.8 | Plus |