Clone BS10401 Report

Search the DGRC for BS10401

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptblw-RA
Protein status:BS10401.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10401.3prime Sequence

874 bp (813 high quality bases) assembled on 2006-04-19

> BS10401.3prime
ATGGTCTAGAAAGCTTTTAACCCTGGAAGGTGGACATGAACTTGGCAACA
ATGTCCTTCAGCTTGGCATCGGACGCCTCCGAGATAGCACCGTCCTTGGC
GATGGTGTCGAGCAGAGCCTGCTCGGAGGTCTTGATGTGCTGCAAGAACT
CCTTCTCGAACTTGGTGATCTTGGCGGGATCCATCTTGTCCAGATGACCG
CGCACACCGCAGTAGATAACGGCGACCTGATCCTCAATGGCCATGGGCAC
GTACTGACCCTGCTTGAGCAGCTCAGTGAGGCGCACACCACGGTTCAGCA
GCTGCTGGGTGGCGGCATCCAGATCGGAACCGAACTGGGCGAAGGCAGCG
ACCTCACGGTACTGGGCCAACTCCAGCTTCATGGAACCGGCCACCTGCTT
CATGGCCTTGGTCTGGGCAGCGGAACCCACACGGGACACGGACAGACCGA
CGTTAATGGCAGGGCGGATACCCTTGTAGAACAACTCGGTCTCCAAGAAG
ATCTGTCCGTCGGTAATCGAGATGACGTTGGTTGGAATGTAGGCGGACAC
ATCGCCAGCCTGGGTCTCGATCACGGGCAGAGCAGTCAGGGAACCGCCTC
CCATGGCGGGGGACATCTTGGCGGCACGCTCCAGCAGACGCGAATGCAGG
TAGAACACATCACCGGGGTAGGCCTCACGACCTGGGGGACGACGCAGCAA
CAGGGACATCTGACGGTAGGCCACAGCCTGCTTGGACAAATCATCGTAGA
TGATCAGGGCGTGCTTGCCCTTGTCGCGGAAGTACTCTCCCATGGCGCAT
CCGGAGTAGGGGGCCAAGTACTGCAGAGGAGCAGCGTCGGAGGCGGTGGC
CGACACGATCACGGAGTACCCCAT

BS10401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3612-PA 1659 blw-RA 802..1659 874..17 4265 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
blw-RA 2252 CG3612-RA 907..1764 874..17 4275 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22800723..22801372 874..225 3235 99.8 Minus
2R 25286936 2R 22801480..22801692 229..17 1065 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:24:45 has no hits.

BS10401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:40 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
blw-PA 802..1659 17..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:05 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3612-PA 802..1659 17..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:55:28 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
blw-RA 907..1766 13..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:39 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
blw-RA 907..1766 13..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:39 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22800723..22801370 227..874 99 -> Minus
2R 22801483..22801694 13..226 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:55:28 Download gff for BS10401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18688228..18688875 227..874 99 -> Minus
arm_2R 18688988..18689199 13..226 99   Minus

BS10401.5prime Sequence

888 bp (824 high quality bases) assembled on 2006-04-19

> BS10401.5prime
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGGCCCCCTACT

BS10401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3612-PA 1659 blw-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
blw-RA 2252 CG3612-RA 106..976 17..888 4335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22799893..22800476 80..663 2920 100 Plus
2R 25286936 2R 22800568..22800788 663..883 1090 99.5 Plus
2R 25286936 2R 22799204..22799271 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:32:47 has no hits.

BS10401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:41 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
blw-PA 1..871 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:07 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3612-PA 1..871 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:31 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
blw-RA 98..976 9..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:07 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
blw-RA 98..976 9..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:07 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22799196..22799269 9..82 94 -> Plus
2R 22799896..22800476 83..663 100 -> Plus
2R 22800569..22800792 664..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:31 Download gff for BS10401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18686701..18686774 9..82 94 -> Plus
arm_2R 18687401..18687981 83..663 100 -> Plus
arm_2R 18688074..18688297 664..888 99   Plus

BS10401.complete Sequence

1691 bp (1691 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636639

> BS10401.complete
GAAGTTATCAGTCGACATGTCGATTTTTTCCGCCCGCCTGGCGTCCTCGG
TCGCCCGTAACCTGCCCAAGGCTGCCAACCAGGTCGCCTGCAAAGCCGCT
TATCCCGCCGCCAGTCTTGCTGCCCGCAAGCTCCATGTGGCCAGCACGCA
GCGTAGCGCTGAGATCTCCAACATCCTGGAGGAGCGCATCCTGGGCGTCG
CCCCCAAGGCTGATCTGGAGGAAACCGGCCGTGTGCTGAGCATCGGTGAC
GGTATCGCCCGTGTCTACGGTCTGAACAACATCCAGGCCGATGAGATGGT
GGAGTTCTCCTCCGGACTGAAGGGCATGGCCCTTAACTTGGAGCCCGACA
ACGTCGGTGTTGTGGTCTTCGGTAACGATAAGCTGATCAAGCAGGGCGAT
ATCGTCAAGCGTACCGGTGCCATCGTGGATGTGCCCGTCGGTGATGAGCT
GCTGGGTCGCGTCGTCGATGCCCTGGGAAATGCCATCGACGGCAAGGGTG
CCATCAACACCAAGGACCGTTTCCGTGTGGGAATCAAGGCCCCCGGCATC
ATCCCCCGTGTGTCCGTGCGCGAGCCCATGCAGACCGGTATCAAGGCCGT
CGACTCCCTGGTGCCCATCGGTCGTGGTCAGCGTGAGCTGATCATTGGCG
ATCGTCAGACTGGTAAGACCGCTCTGGCCATCGACACCATCATCAACCAG
AAGCGCTTCAACGAGGCCCAGGACGAGTCCAAGAAGCTGTACTGCATCTA
CGTCGCCATTGGCCAGAAGCGTTCCACCGTCGCCCAGATCGTGAAGCGTC
TGACCGACTCCGGCGCCATGGGCTACTCCGTGATCGTGTCGGCCACCGCC
TCCGACGCTGCTCCTCTGCAGTACTTGGCCCCCTACTCCGGATGCGCCAT
GGGAGAGTACTTCCGCGACAAGGGCAAGCACGCCCTGATCATCTACGATG
ATTTGTCCAAGCAGGCTGTGGCCTACCGTCAGATGTCCCTGTTGCTGCGT
CGTCCCCCAGGTCGTGAGGCCTACCCCGGTGATGTGTTCTACCTGCATTC
GCGTCTGCTGGAGCGTGCCGCCAAGATGTCCCCCGCCATGGGAGGCGGTT
CCCTGACTGCTCTGCCCGTGATCGAGACCCAGGCTGGCGATGTGTCCGCC
TACATTCCAACCAACGTCATCTCGATTACCGACGGACAGATCTTCTTGGA
GACCGAGTTGTTCTACAAGGGTATCCGCCCTGCCATTAACGTCGGTCTGT
CCGTGTCCCGTGTGGGTTCCGCTGCCCAGACCAAGGCCATGAAGCAGGTG
GCCGGTTCCATGAAGCTGGAGTTGGCCCAGTACCGTGAGGTCGCTGCCTT
CGCCCAGTTCGGTTCCGATCTGGATGCCGCCACCCAGCAGCTGCTGAACC
GTGGTGTGCGCCTCACTGAGCTGCTCAAGCAGGGTCAGTACGTGCCCATG
GCCATTGAGGATCAGGTCGCCGTTATCTACTGCGGTGTGCGCGGTCATCT
GGACAAGATGGATCCCGCCAAGATCACCAAGTTCGAGAAGGAGTTCTTGC
AGCACATCAAGACCTCCGAGCAGGCTCTGCTCGACACCATCGCCAAGGAC
GGTGCTATCTCGGAGGCGTCCGATGCCAAGCTGAAGGACATTGTTGCCAA
GTTCATGTCCACCTTCCAGGGTTAAAAGCTTTCTAGACCAT

BS10401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
blw-RA 1659 CG3612-PA 1..1659 17..1675 8295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
blw-RA 2252 CG3612-RA 106..1764 17..1675 8295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22800568..22801372 663..1467 4025 100 Plus
2R 25286936 2R 22799893..22800476 80..663 2920 100 Plus
2R 25286936 2R 22801480..22801692 1463..1675 1065 100 Plus
2R 25286936 2R 22799204..22799271 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:53:34 has no hits.

BS10401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:07 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
blw-RA 1..1659 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:35 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
blw-RA 143..1811 9..1679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:02 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
blw-RA 106..1762 17..1673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:08 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
blw-RA 143..1811 9..1679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:13 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
blw-RA 106..1762 17..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:13 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22799204..22799269 17..82 100 -> Plus
2R 22799896..22800476 83..663 100 -> Plus
2R 22800569..22801370 664..1465 100 -> Plus
2R 22801483..22801690 1466..1673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:02 Download gff for BS10401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18686709..18686774 17..82 100 -> Plus
arm_2R 18687401..18687981 83..663 100 -> Plus
arm_2R 18688074..18688875 664..1465 100 -> Plus
arm_2R 18688988..18689195 1466..1673 100   Plus

BS10401.pep Sequence

Translation from 16 to 1674

> BS10401.pep
MSIFSARLASSVARNLPKAANQVACKAAYPAASLAARKLHVASTQRSAEI
SNILEERILGVAPKADLEETGRVLSIGDGIARVYGLNNIQADEMVEFSSG
LKGMALNLEPDNVGVVVFGNDKLIKQGDIVKRTGAIVDVPVGDELLGRVV
DALGNAIDGKGAINTKDRFRVGIKAPGIIPRVSVREPMQTGIKAVDSLVP
IGRGQRELIIGDRQTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQ
KRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLAPYSGCAMGEYFR
DKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER
AAKMSPAMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY
KGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGS
DLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDP
AKITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTF
QG*

BS10401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
blw-PA 552 CG3612-PA 1..552 1..552 2737 100 Plus
Vha55-PC 490 CG17369-PC 63..390 103..425 265 25.5 Plus
Vha55-PA 490 CG17369-PA 63..390 103..425 265 25.5 Plus
Vha55-PB 490 CG17369-PB 63..390 103..425 265 25.5 Plus
ATPsyn-beta-PC 511 CG11154-PC 1..390 3..416 252 22.8 Plus