Clone Sequence Records
BS10402.3prime Sequence
921 bp (790 high quality bases) assembled on 2006-04-19
> BS10402.3prime
ATGGTCTAGAAAGCTTCTAAGGCATGCCAGGCAGTCCACCGCCCACAAGG
CGCTGCTGTTGCTGCTGCTGGTGAATGAGGTTCACCCTAGCTCGTTGCTG
CTCCAACCGCTGCACCGTAGCCGTCAGATGGGAGTTCTCCACATATAGAT
CCTTCACCAGGATGTCGGCACTCTGCAATCGCTGTGTCTGATCGGCCAGT
AAAACACCCTGGGTCTCGATTCGGCTATGCAAATCGTTGAGCTCCACTTG
ATGCTGCCGCCAGGATTGCTGCATCAGGGACTCCGTGTAATGCTGCTGCT
GCTTGATGACATTCTGCAGATGGCGATTTCGCAGCTCCAATTGGTTCAGT
CGCTGCTGAAGCGTTGGATGCGTTGTTCGCGCATAGGCCTTCTCGAGCAC
GGGTCGCGCCTCCTGCAACTGCTGCAGTTCCATGACCAGACCGTCCCGCT
GCAGACTCAGATCCTTGATTTGCTCCTTGAGGGAGAGCTCGAAGAACTTA
AGGCGCTTCAGTTCCTCCTTCAGTGCCGACGGACTGCTGCACTTCTCGTG
GCTAAGGCAAGACGTTTTACTGTTGGATTCGAAGCTTTTGCCGGACGCCG
TCGACGACGTCTCGCAATCGGCTATCTCTCCCTCCGATGCAGCCGCCTGT
TGGGGACTCTGGGACCGCTTGGGCTTGCTGATCGGAGCTGGGCCGGGATT
GGCGCCGTAGGCGTTGCTGTTGCCACTGTTCGTGGGCGAAGGACCCGACT
GAGAGCTTTCGAAGGGTGTAGTGCTAAAGATGGATGTTTCCGAAGTGGTG
AGGTTATTGCGGCTGGCTGTCTTGTGCGATGGTGAGCCTCCGAGCAATTC
GATGGCACTGGCGGTGGCTTCATCCTTGGAATCGGCAAGCGATTTCGCTG
GCTCTTGGATGGTGCTCTGCA
BS10402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14025-PB | 3276 | Bsg25D-RB | 2372..3276 | 921..17 | 4525 | 100 | Minus |
| CG14025-PC | 3099 | Bsg25D-RC | 2195..3099 | 921..17 | 4525 | 100 | Minus |
| Bsg25D-P1 | 2226 | Bsg25D-RA | 2111..2222 | 921..810 | 560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RG | 4666 | CG14025-RG | 2812..3716 | 921..17 | 4525 | 100 | Minus |
| Bsg25D-RC | 4065 | CG14025-RC | 2211..3115 | 921..17 | 4525 | 100 | Minus |
| Bsg25D-RB | 4585 | CG14025-RB | 2731..3635 | 921..17 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5273161..5273591 | 380..810 | 2155 | 100 | Plus |
| 2L | 23513712 | 2L | 5272678..5272928 | 17..267 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 5272986..5273098 | 268..380 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 5274019..5274130 | 810..921 | 560 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 17:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6895 | 454..248 | 125 | 57.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6815 | 113..52 | 121 | 72.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6472..6557 | 138..49 | 115 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1575 | 115..52 | 114 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 102..52 | 111 | 76.5 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 150..176 | 75..49 | 108 | 88.9 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9180..9206 | 75..49 | 108 | 88.9 | Minus |
BS10402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:42 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14025-PB | 2373..3276 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:08 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14025-PC | 2196..3099 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:51 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 2732..3638 | 10..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:46 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 2732..3638 | 10..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:46 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5272675..5272928 | 10..267 | 98 | <- | Plus |
| 2L | 5272986..5273097 | 268..379 | 100 | <- | Plus |
| 2L | 5273161..5273590 | 380..809 | 100 | <- | Plus |
| 2L | 5274019..5274129 | 810..920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:51 Download gff for
BS10402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5272675..5272928 | 10..267 | 98 | <- | Plus |
| arm_2L | 5272986..5273097 | 268..379 | 100 | <- | Plus |
| arm_2L | 5273161..5273590 | 380..809 | 100 | <- | Plus |
| arm_2L | 5274019..5274129 | 810..920 | 100 | | Plus |
BS10402.5prime Sequence
960 bp (791 high quality bases) assembled on 2006-04-19
> BS10402.5prime
GAAGTTATCAGTCGACATGGAGGTATCCGCCGATCCGTACGAGCAGAAGC
TCTACCAAATGTTCCGCAGCTGCGAGACGCAGTGTGGACTTCTGGACGAG
AAGTCCCTGCTGAAGCTCTGCTCACTGCTGGAGCTCCGGGATCAGGGATC
CGCACTGATCGCCAGCCTGGGCGGCAGCCATCAGCTGGGCGTGTCCTTTG
GCCAGTTCAAGGAGGCGCTACTCAACTTCCTGGGCTCCGAGTTCGATGGT
AATACGTCATCGGGTTTCATTGAGCGTTCACTGGTGATTACGGATGAGCC
GCTAAACAACACATACATCGAGAGTCCGCCGGAGTCTTCCGATCGCGAGG
TTTCACCCAAACTCGTCGTGGGCACCAAGAAATACGGTCGCCGGTCTAGG
CCACAGCAGGGAATCTACGAGTTATCCGTCACGGACTCGGACAATACGGA
CGAGGACCAGTTGCAGCAGCAGCAAAATCAGCGAAGCCTCAACGGATGCG
ATGAGCTGGGAGTTCAGGTGCAACGTTCCTCGTCCCAGAGCGATCTTCCT
GGCAGCCGGCGTCTGCGGTCCGTCCACACCAGCGGGAGCAAACTGAAGCG
TTGTGCTTCACTGCCAGCACGCCGGAAGATGAACAGCAACACCACGGGAG
CCACTACATCACCGACGGCAGCGGCCAAGTTGAAACAGCTTTCCATCCAG
AGCCAGGCGCAGCACAGCAGCAGCGTGGAATCACTGGACACCGTGACGCC
GCAGCAATTGGAGACGATCTCAGTGCATAGCATTATGGAAGCCTGGGAGC
TGGCCAGCATTCCCAACACTCGCAACCTACTTCACGTCCTGGGATTCGAT
GAGGAGGAGGAGGTGAACCTGCAGCAGCTAACTAAGGCATTGGAGGAGGA
GCTGCGGGGCATCGATGGGGATCACGAGCAATCGAATATGTTGCGCGCTC
TGGCTGCTCT
BS10402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14025-PB | 3276 | Bsg25D-RB | 1..944 | 17..960 | 4720 | 100 | Plus |
| CG14025-PC | 3099 | Bsg25D-RC | 77..767 | 270..960 | 3455 | 100 | Plus |
| Bsg25D-P1 | 2226 | Bsg25D-RA | 231..477 | 271..517 | 1235 | 100 | Plus |
| Bsg25D-P1 | 2226 | Bsg25D-RA | 1..232 | 17..248 | 1160 | 100 | Plus |
| Bsg25D-P1 | 2226 | Bsg25D-RA | 475..683 | 752..960 | 1045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RE | 4549 | CG14025-RE | 360..1303 | 17..960 | 4720 | 100 | Plus |
| Bsg25D-RB | 4585 | CG14025-RB | 360..1303 | 17..960 | 4720 | 100 | Plus |
| Bsg25D-RF | 4525 | CG14025-RF | 360..1279 | 17..960 | 4350 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5277934..5278189 | 272..17 | 1280 | 100 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 520..272 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5275558..5275781 | 960..737 | 1120 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 737..515 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:20:25 has no hits.
BS10402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:44 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14025-PB | 1..944 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:10 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14025-PB | 1..944 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:11 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..1303 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:42 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..1303 | 17..960 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:42 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5276936..5277180 | 273..517 | 100 | <- | Minus |
| 2L | 5277934..5278189 | 17..272 | 100 | | Minus |
| 2L | 5275558..5275780 | 738..960 | 100 | <- | Minus |
| 2L | 5276512..5276731 | 518..737 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:11 Download gff for
BS10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5275558..5275780 | 738..960 | 100 | <- | Minus |
| arm_2L | 5276512..5276731 | 518..737 | 100 | <- | Minus |
| arm_2L | 5276936..5277180 | 273..517 | 100 | <- | Minus |
| arm_2L | 5277934..5278189 | 17..272 | 100 | | Minus |
BS10402.complete Sequence
3308 bp assembled on 2009-12-07
GenBank Submission: KX801350
> BS10402.complete
GAAGTTATCAGTCGACATGGAGGTATCCGCCGATCCGTACGAGCAGAAGC
TCTACCAAATGTTCCGCAGCTGCGAGACGCAGTGTGGACTTCTGGACGAG
AAGTCCCTGCTGAAGCTCTGCTCACTGCTGGAGCTCCGGGATCAGGGATC
CGCACTGATCGCCAGCCTGGGCGGCAGCCATCAGCTGGGCGTGTCCTTTG
GCCAGTTCAAGGAGGCGCTACTCAACTTCCTGGGCTCCGAGTTCGATGGT
AATACGTCATCGGGTTTCATTGAGCGTTCACTGGTGATTACGGATGAGCC
GCTAAACAACACATACATCGAGAGTCCGCCGGAGTCTTCCGATCGCGAGG
TTTCACCCAAACTCGTCGTGGGCACCAAGAAATACGGTCGCCGGTCTAGG
CCACAGCAGGGAATCTACGAGTTATCCGTCACGGACTCGGACAATACGGA
CGAGGACCAGTTGCAGCAGCAGCAAAATCAGCGAAGCCTCAACGGATGCG
ATGAGCTGGGAGTTCAGGTGCAACGTTCCTCGTCCCAGAGCGATCTTCCT
GGCAGCCGGCGTCTGCGGTCCGTCCACACCAGCGGGAGCAAACTGAAGCG
TTGTGCTTCACTGCCAGCACGCCGGAAGATGAACAGCAACACCACGGGAG
CCACTACATCACCGACGGCAGCGGCCAAGTTGAAACAGCTTTCCATCCAG
AGCCAGGCGCAGCACAGCAGCAGCGTGGAATCACTGGACACCGTGACGCC
GCAGCAATTGGAGACGATCTCAGTGCATAGCATTATGGAAGCCTGGGAGC
TGGCCAGCATTCCCAACACTCGCAACCTACTTCACGTCCTGGGATTCGAT
GAGGAGGAGGAGGTGAACCTGCAGCAGCTAACTAAGGCATTGGAGGAGGA
GCTGCGGGGCATCGATGGGGATCACGAGCAATCGAATATGTTGCGCGCTC
TGGCTGCTCTGCAGGCCACCGAGTTGGGCAACTACAGACTTGCCTATAGG
CAGCAGCATGAGGAGAACCTCAAGCTGAGGGCCGATAATAAGGCGGCCAA
CCAAAGGGTGGCTTTGCTTGCCGTGGAAGTGGATGAGCGGCATGCGTCGC
TGGAGGATAACTCCAAGAAGCAGGTGCAGCAGCTGGAGCAAAGACACGCC
AGCATGGTGCGTGAAATAACGCTGCGGATGACTAATGACCGCGATCACTG
GACCAGCATGACGGGAAAGCTGGAGGCACAGCTTAAATCGCTTGAGCAGG
AGGAGATCCGTCTGAGAACGGAACTTGAACTGGTGCGCACTGAGAACACG
GAGCTTGAGTCGGAGCAGCAAAAGGCTCACATCCAAATCACAGAGCTTCT
CGAACAGAACATTAAGCTCAACCAGGAACTGGCCCAAACGTCGAGCAGCA
TTGGTGGCACCCCGGAGCACAGTCCATTGCGACCGAGAAGGCATAGCGAG
GACAAGGAGGAGGAGATGCTCCAGCTAATGGAGAAGCTGGCTGCTCTTCA
AATGGAGAACGCCCAGCTGCGTGACAAGACTGACGAACTGACCATCGAAA
TCGAGAGCTTAAATGTGGAACTAATTCGCTCGAAAACCAAGGCTAAAAAG
CAAGAAAAACAGGAGAAACAAGAGGACCAGGAGTCGGCGGCCACGGCTAC
CAAAAGGCGTGGGGATTCGCCGAGCAAAACACATCTAACAGAGGAGAGCC
CTCGCTTGGGGAAACAGCGCAAGTGCACCGAAGGAGAGCAGAGCGATGCC
AGCAACAGCGGAGATTGGTTGGCTCTAAACTCCGAGCTGCAAAGAAGTCA
AAGCCAGGATGAGGAGCTAACAAGCCTTAGACAGCGGGTTGCTGAGCTAG
AGGAGGAACTCAAGGCTGCAAAGGAAGGCAGATCTCTCACCCCGGAAAGC
CGTTCGAAGGAACTGGAGACCAGTCTAGAGCAAATGCAGCGTGCCTATGA
GGATTGCGAGGACTACTGGCAAACGAAACTTAGCGAGGAGCGGCAGCTGT
TTGAGAAGGAGCGACAGATCTACGAAGATGAGCAGCACGAGAGCGACAAG
AAGTTCACCGAGCTGATGGAAAAGGTGCGCGAGTACGAGGAGCAGTTCAG
CAAGGATGGCCGCCTCTCGCCCATTGATGAGCGCGATATGCTGGAACAGC
AGTACTCGGAATTGGAGGCAGAGGCAGCCCAGCTGCGCTCGAGTTCCATT
CAAATGCTCGAGGAGAAGGCTCAGGAAATCAGTTCACTGCAATCAGAGAT
CGAGGATTTGCGACAGAGATTGGGTGAGAGCGTTGAGATCCTCACAGGCG
CCTGTGAACTCACCTCGGAGTCGGTAGCCCAACTGAGTGCCGAGGCGGGA
AAAAGTCCAGCCAGCTCACCCATCAGCTACCTCTGGCTGCAGAGCACCAT
CCAAGAGCCAGCGAAATCGCTTGCCGATTCCAAGGATGAAGCCACCGCCA
GTGCCATCGAATTGCTCGGAGGCTCACCATCGCACAAGACAGCCAGCCGC
AATAACCTCACCACTTCGGAAACATCCATCTTTAGCACTACACCCTTCGA
AAGCTCTCAGTCGGGTCCTTCGCCCACGAACAGTGGCAACAGCAACGCCT
ACGGCGCCAATCCCGGCCCAGCTCCGATCAGCAAGCCCAAGCGGTCCCAG
AGTCCCCAACAGGCGGCTGCATCGGAGGGAGAGATAGCCGATTGCGAGAC
GTCGTCGACGGCGTCCGGCAAAAGCTTCGAATCCAACAGTAAAACGTCTT
GCCTTAGCCACGAGAAGTGCAGCAGTCCGTCGGCACTGAAGGAGGAACTG
AAGCGCCTTAAGTTCTTCGAGCTCTCCCTCAAGGAGCAAATCAAGGATCT
GAGTCTGCAGCGGGACGGTCTGGTCATGGAACTGCAGCAGTTGCAGGAGG
CGCGACCCGTGCTCGAGAAGGCCTATGCGCGAACAACGCATCCAACGCTT
CAGCAGCGACTGAACCAATTGGAGCTGCGAAATCGCCATCTGCAGAATGT
CATCAAGCAGCAGCAGCATTACACGGAGTCCCTGATGCAGCAATCCTGGC
GGCAGCATCAAGTGGAGCTCAACGATTTGCATAGCCGAATCGAGACCCAG
GGTGTTTTACTGGCCGATCAGACACAGCGATTGCAGAGTGCCGACATCCT
GGTGAAGGATCTATATGTGGAGAACTCCCATCTGACGGCTACGGTGCAGC
GGTTGGAGCAGCAACGAGCTAGGGTGAACCTCATTCACCAGCAGCAGCAA
CAGCAGCGCCTTGTGGGCGGTGGACTGCCTGGCATGCCTTAGAAGCTTTC
TAGACCAT
BS10402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RB | 3276 | CG14025-PB | 1..3276 | 17..3292 | 16380 | 100 | Plus |
| Bsg25D-RC | 3099 | CG14025-PC | 77..3099 | 270..3292 | 15115 | 100 | Plus |
| Bsg25D-RG | 3357 | CG14025-PG | 802..3357 | 737..3292 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RB | 4585 | CG14025-RB | 360..3635 | 17..3292 | 16380 | 100 | Plus |
| Bsg25D-RC | 4065 | CG14025-RC | 93..3115 | 270..3292 | 15115 | 100 | Plus |
| Bsg25D-RG | 4666 | CG14025-RG | 1161..3716 | 737..3292 | 12780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5274019..5275781 | 2499..737 | 8815 | 100 | Minus |
| 2L | 23513712 | 2L | 5273161..5273591 | 2929..2499 | 2155 | 100 | Minus |
| 2L | 23513712 | 2L | 5277934..5278189 | 272..17 | 1280 | 100 | Minus |
| 2L | 23513712 | 2L | 5272678..5272928 | 3292..3042 | 1255 | 100 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 520..272 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 737..515 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 5272986..5273098 | 3041..2929 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6895 | 2855..3061 | 125 | 57.7 | Plus |
BS10402.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:07 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 370..3645 | 17..3292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:53 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..3635 | 17..3292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:51 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 370..3645 | 17..3292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:11 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..3635 | 17..3292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:11 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5277934..5278189 | 17..272 | 100 | | Minus |
| 2L | 5272678..5272928 | 3042..3292 | 100 | <- | Minus |
| 2L | 5272986..5273097 | 2930..3041 | 100 | <- | Minus |
| 2L | 5273161..5273590 | 2500..2929 | 100 | <- | Minus |
| 2L | 5274019..5275780 | 738..2499 | 100 | <- | Minus |
| 2L | 5276512..5276731 | 518..737 | 100 | <- | Minus |
| 2L | 5276936..5277180 | 273..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:53 Download gff for
BS10402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5272678..5272928 | 3042..3292 | 100 | <- | Minus |
| arm_2L | 5272986..5273097 | 2930..3041 | 100 | <- | Minus |
| arm_2L | 5273161..5273590 | 2500..2929 | 100 | <- | Minus |
| arm_2L | 5274019..5275780 | 738..2499 | 100 | <- | Minus |
| arm_2L | 5276512..5276731 | 518..737 | 100 | <- | Minus |
| arm_2L | 5276936..5277180 | 273..517 | 100 | <- | Minus |
| arm_2L | 5277934..5278189 | 17..272 | 100 | | Minus |
BS10402.pep Sequence
Translation from 16 to 3291
> BS10402.pep
MEVSADPYEQKLYQMFRSCETQCGLLDEKSLLKLCSLLELRDQGSALIAS
LGGSHQLGVSFGQFKEALLNFLGSEFDGNTSSGFIERSLVITDEPLNNTY
IESPPESSDREVSPKLVVGTKKYGRRSRPQQGIYELSVTDSDNTDEDQLQ
QQQNQRSLNGCDELGVQVQRSSSQSDLPGSRRLRSVHTSGSKLKRCASLP
ARRKMNSNTTGATTSPTAAAKLKQLSIQSQAQHSSSVESLDTVTPQQLET
ISVHSIMEAWELASIPNTRNLLHVLGFDEEEEVNLQQLTKALEEELRGID
GDHEQSNMLRALAALQATELGNYRLAYRQQHEENLKLRADNKAANQRVAL
LAVEVDERHASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTG
KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIK
LNQELAQTSSSIGGTPEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQ
LRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGD
SPSKTHLTEESPRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQDEE
LTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDY
WQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRL
SPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQ
RLGESVEILTGACELTSESVAQLSAEAGKSPASSPISYLWLQSTIQEPAK
SLADSKDEATASAIELLGGSPSHKTASRNNLTTSETSIFSTTPFESSQSG
PSPTNSGNSNAYGANPGPAPISKPKRSQSPQQAAASEGEIADCETSSTAS
GKSFESNSKTSCLSHEKCSSPSALKEELKRLKFFELSLKEQIKDLSLQRD
GLVMELQQLQEARPVLEKAYARTTHPTLQQRLNQLELRNRHLQNVIKQQQ
HYTESLMQQSWRQHQVELNDLHSRIETQGVLLADQTQRLQSADILVKDLY
VENSHLTATVQRLEQQRARVNLIHQQQQQQRLVGGGLPGMP*
BS10402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-PB | 1091 | CG14025-PB | 1..1091 | 1..1091 | 5455 | 100 | Plus |
| Bsg25D-PG | 1118 | CG14025-PG | 1..1118 | 1..1091 | 5417 | 97.6 | Plus |
| Bsg25D-PE | 1079 | CG14025-PE | 1..1079 | 1..1091 | 5374 | 98.9 | Plus |
| Bsg25D-PF | 1071 | CG14025-PF | 1..1071 | 1..1091 | 5314 | 98.2 | Plus |
| Bsg25D-PC | 1032 | CG14025-PC | 10..1032 | 60..1091 | 5026 | 98 | Plus |
