Clone BS10403 Report

Search the DGRC for BS10403

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptPdk1-RA
Protein status:BS10403.pep: full length peptide match
Sequenced Size:2300

Clone Sequence Records

BS10403.complete Sequence

2300 bp assembled on 2009-12-07

GenBank Submission: KX805578

> BS10403.complete
GAAGTTATCAGTCGACATGCCGGCTATGGCCAAGGAGAAAGCATCAGCAA
CAGTGTCCTTGGGCGAGTCGAATTTCAGAGATATCAACCTAAAAGACTTG
GCCGTGGTCGTCGAAGCGGCATCGCGGCTGCACCACCAGCAAAACGTATG
CGGCTGCGGAGCGGTATCGTCTACTGAGAACAACAACAACAGTCGCTACG
GCAGCAGCAAGTATCTGACAAACGGCCACACGTCGCCTTTGGCGGCAGCG
GTTGCTAGCAACAGTTCGTCGGTGGCCACGACACCGCATTGCAGAATGTT
GCACAACTGCAGTCTGCAGCAGTACCAGAATGACATAAGGCAGCAGACGG
AGATATTGGACATGTTGCGGCAGCAGCATCAGCAGGGCTACCAGTCGCAG
CAACAGCAACAACAGCCGCAGCAGCAGCAGGAACAACAGCAGCAGCAGGA
GCAATCGCAGCAGCAGCAACAGCTACAGAATCCTGCGCCCAGGAGGTCTC
CGAATGATTTCATTTTCGGTCGTTACATAGGCGAGGGCAGCTATAGCATA
GTTTATCTGGCCGTGGATATACACTCTCGCCGCGAGTATGCAATTAAAGT
ATGCGAGAAGCGGCTGATCCTGCGCGAACGGAAGCAGGACTACATCAAGC
GTGAACGCGAGGTGATGCACCAGATGACCAACGTTCCCGGCTTCGTAAAC
CTGTCGTGCACCTTCCAGGACCAGCGTTCTCTTTACTTTGTGATGACGTA
CGCGCGAAAGGGCGACATGTTGCCATACATCAACCGCGTGGGTAGCTTTG
ACGTGGCCTGCACGCGCCACTACGCTGCCGAGCTTCTGCTGGCCTGCGAG
CACATGCACCGCCGTAATGTGGTGCACCGCGACCTCAAGCCCGAGAACAT
CCTGCTCGACGAGGACATGCACACGCTAATCGCCGACTTCGGTTCCGCCA
AGGTGATGACAGCCCACGAAAGGGCTCTGGCCACGGAGCACTGTTCGGAG
CAGCGGCGCAGCAACTCCGATGAAGACGATGAAGACAGCGACCGCCTGGA
AAACGAAGACGAAGACTTCTACGATCGCGATTCGGAGGAGTTGGACGACG
GCGACGACGAACAGCAGCAGGAAGAGATGGACTCCCCACGCCATCGTCAA
AGGCGTTACAACCGTCACCGAAAGGCAAGCTTTGTGGGCACTGCCCAGTA
CGTTTCACCGGAAGTGCTCCAAAATGGACCTATAACCCCGGCGGCGGACC
TGTGGGCACTGGGATGTATAGTTTATCAGATGATCGCCGGCCTACCGCCA
TTCCGTGGCAGCAACGATTATGTCATTTTTAAAGAGATTCTTGACTGCGC
CGTGGACTTCCCGCAAGGCTTTGATAAGGACGCCGAGGACCTGGTGCGCA
AGCTGCTCCGTGTCGATCCGCGAGACCGCCTGGGTGCTCAGGACGAGTTT
GGATATTACGAATCCATTCGGGCGCACCCATTCTTCGCCGGCATTGACTG
GCAGACGCTCCGTCAACAAACCCCTCCCCCCATCTACCCATACTTACCGG
GCGTAAGTCAGGATGAGGACTTCAGGTCCAGCTATACTGTGCCCGGGGAT
TTGGAGCCTGGCCTTGACGAACGGCAGATATCGCGACTGCTTAGTGCAGA
ATTAGGCGTTGGCAGCAGCGTGGCCATGCCCGTCAAGCGATCGACCGCAA
AGAACTCTTTCGACCTGAACGATGCCGAGAAGCTGCAGCGTCTCGAGCAA
CAAAAGACTGACAAGTGGCACGTTTTTGCCGACGGCGAAGTGATCCTCAA
GAAGGGGTTTGTCAACAAGCGCAAGGGTCTGTTTGCCCGCAAGCGAATGC
TCCTTCTGACCACGGGACCGCGACTCATCTATATCGATCCCGTGCAGATG
ATCAAAAAAGGAGAAATTCCGTGGAGCCCAGATCTCCGAGCGGAGTACAA
AAACTTCAAAATTTTTTTTGTCCATACGCCAAATCGAACCTATTACCTGG
ATGATCCCGAAGGCTATGCTATCCACTGGTCGGAAGCTATTGAGAACATG
CGCAAGTTGGCCTACGGAGATCCCTCCTCCACATCTGCAGTGTCCTGCTC
CAGCGGCAGCAGTAATAGCCTGGCTGTCATCTCAAATTCATCCGCCGCCT
CCTCAAGCAATTCGCCCACGGTGAAACGCAGTTCCCCCGTAAACGCTCCT
CAAGCTTCGACGGCGTCTGACAACCGGACATTGGGTAGCACCAGAACGGG
GACGTCACCTAGCAAGAAGACGGCGTCTAAGTAAAAGCTTTCTAGACCAT

BS10403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk1-RJ 2511 CG1210-PJ 244..2511 17..2284 11340 100 Plus
Pdk1-RF 2268 CG1210-PF 1..2268 17..2284 11340 100 Plus
Pdk1-RH 2268 CG1210-PH 1..2268 17..2284 11340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk1-RJ 4959 CG1210-RJ 617..2885 17..2285 11345 100 Plus
Pdk1-RF 4162 CG1210-RF 422..2690 17..2285 11345 100 Plus
Pdk1-RH 4347 CG1210-RH 607..2875 17..2285 11345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 141765..142879 589..1703 5560 99.9 Plus
3L 28110227 3L 135966..136339 224..597 1855 99.7 Plus
3L 28110227 3L 143514..143821 1978..2285 1540 100 Plus
3L 28110227 3L 142943..143217 1704..1978 1375 100 Plus
3L 28110227 3L 135635..135843 17..225 1045 100 Plus
Blast to na_te.dros performed 2014-11-28 02:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2686 125..474 268 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2660 179..484 190 56.5 Plus

BS10403.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:12 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
Pk61C-RA 875..3140 17..2282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:03 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RH 607..2872 17..2282 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:13 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
Pk61C-RA 875..3140 17..2282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:18 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RH 607..2872 17..2282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:18 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 135967..136335 225..593 100 -> Plus
3L 135635..135842 17..224 100 -> Plus
3L 141770..142879 594..1703 100 -> Plus
3L 142943..143217 1704..1978 100 -> Plus
3L 143515..143818 1979..2282 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:03 Download gff for BS10403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 135635..135842 17..224 100 -> Plus
arm_3L 135967..136335 225..593 100 -> Plus
arm_3L 141770..142879 594..1703 100 -> Plus
arm_3L 142943..143217 1704..1978 100 -> Plus
arm_3L 143515..143818 1979..2282 100   Plus

BS10403.3prime Sequence

774 bp (764 high quality bases) assembled on 2006-04-19

> BS10403.3prime
ATGGTCTAGAAAGCTTTTACTTAGACGCCGTCTTCTTGCTAGGTGACGTC
CCCGTTCTGGTGCTACCCAATGTCCGGTTGTCAGACGCCGTCGAAGCTTG
AGGAGCGTTTACGGGGGAACTGCGTTTCACCGTGGGCGAATTGCTTGAGG
AGGCGGCGGATGAATTTGAGATGACAGCCAGGCTATTACTGCTGCCGCTG
GAGCAGGACACTGCAGATGTGGAGGAGGGATCTCCGTAGGCCAACTTGCG
CATGTTCTCAATAGCTTCCGACCAGTGGATAGCATAGCCTTCGGGATCAT
CCAGGTAATAGGTTCGATTTGGCGTATGGACAAAAAAAATTTTGAAGTTT
TTGTACTCCGCTCGGAGATCTGGGCTCCACGGAATTTCTCCTTTTTTGAT
CATCTGCACGGGATCGATATAGATGAGTCGCGGTCCCGTGGTCAGAAGGA
GCATTCGCTTGCGGGCAAACAGACCCTTGCGCTTGTTGACAAACCCCTTC
TTGAGGATCACTTCGCCGTCGGCAAAAACGTGCCACTTGTCAGTCTTTTG
TTGCTCGAGACGCTGCAGCTTCTCGGCATCGTTCAGGTCGAAAGAGTTCT
TTGCGGTCGATCGCTTGACGGGCATGGCCACGCTGCTGCCAACGCCTAAT
TCTGCACTAAGCAGTCGCGATATCTGCCGTTCGTCAAGGCCAGGCTCCAA
ATCCCCGGGCACAGTATAGCTGGACCTGAAGTCCTCATCCTGACTTACGC
CCGGTAAGTATGGGTAGTGGGGGG

BS10403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1210-PC 2460 Pk61C-RC 1710..2460 767..17 3755 100 Minus
CG1210-PG 1620 Pk61C-RG 870..1620 767..17 3755 100 Minus
CG1210-PB 1620 Pk61C-RB 870..1620 767..17 3755 100 Minus
CG1210-PE 1620 Pk61C-RE 870..1620 767..17 3755 100 Minus
CG1210-PD 2511 Pk61C-RD 1761..2511 767..17 3755 100 Minus
CG1210-PA 2268 Pk61C-RA 1518..2268 767..17 3755 100 Minus
CG1210-PH 2268 Pk61C-RH 1518..2268 767..17 3755 100 Minus
CG1210-PF 2268 Pk61C-RF 1518..2268 767..17 3755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk1-RJ 4959 CG1210-RJ 2126..2885 774..16 3775 99.9 Minus
Pdk1-RF 4162 CG1210-RF 1931..2690 774..16 3775 99.9 Minus
Pdk1-RH 4347 CG1210-RH 2116..2875 774..16 3775 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 143514..143821 323..16 1540 100 Minus
3L 28110227 3L 142943..143217 597..323 1375 100 Minus
3L 28110227 3L 142703..142879 774..598 855 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 04:36:20 has no hits.

BS10403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:45 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
Pk61C-PF 1510..2268 17..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:12 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1210-PF 1510..2268 17..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:24 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RF 1931..2690 16..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:55 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RH 2116..2875 16..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:55 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 142702..142879 598..774 99 -> Minus
3L 142943..143217 323..597 100 -> Minus
3L 143515..143821 16..322 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:24 Download gff for BS10403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 142702..142879 598..774 99 -> Minus
arm_3L 142943..143217 323..597 100 -> Minus
arm_3L 143515..143821 16..322 100   Minus

BS10403.5prime Sequence

935 bp (786 high quality bases) assembled on 2006-04-19

> BS10403.5prime
GAAGTTATCAGTCGACATGCCGGCTATGGCCAAGGAGAAAGCATCAGCAA
CAGTGTCCTTGGGCGAGTCGAATTTCAGAGATATCAACCTAAAAGACTTG
GCCGTGGTCGTCGAAGCGGCATCGCGGCTGCACCACCAGCAAAACGTATG
CGGCTGCGGAGCGGTATCGTCTACTGAGAACAACAACAACAGTCGCTACG
GCAGCAGCAAGTATCTGACAAACGGCCACACGTCGCCTTTGGCGGCAGCG
GTTGCTAGCAACAGTTCGTCGGTGGCCACGACACCGCATTGCAGAATGTT
GCACAACTGCAGTCTGCAGCAGTACCAGAATGACATAAGGCAGCAGACGG
AGATATTGGACATGTTGCGGCAGCAGCATCAGCAGGGCTACCAGTCGCAG
CAACAGCAACAACAGCCGCAGCAGCAGCAGGAACAACAGCAGCAGCAGGA
GCAATCGCAGCAGCAGCAACAGCTACAGAATCCTGCGCCCAGGAGGTCTC
CGAATGATTTCATTTTCGGTCGTTACATAGGCGAGGGCAGCTATAGCATA
GTTTATCTGGCCGTGGATATACACTCTCGCCGCGAGTATGCAATTAAAGT
ATGCGAGAAGCGGCTGATCCTGCGCGAACGGAAGCAGGACTACATCAAGC
GTGAACGCGAGGTGATGCACCAGATGACCAACGTTCCCGGCTTCGTAAAC
CTGTCGTGCACCTTCCAGGACCAGCGTTCTCTTTACTTTGTGATGACGTA
CGCGCGAAAGGGCGACATGTTGCCATACATCAACCGCGTGGGTAGCTTTG
ACGTGGCCTGCACGCGCCACTACGCTGCCGAGCTTCTGCTGGCCTGCGAG
CACATGCACCGCCGTAATGTGGTGCACCGCGACCCTCAGCCCGAGAACAT
CCTGCTCGACGAGGACTGCACACGCTAATCGCCGA

BS10403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1210-PC 2460 Pk61C-RC 193..1060 17..884 4340 100 Plus
CG1210-PD 2511 Pk61C-RD 244..1111 17..884 4340 100 Plus
CG1210-PA 2268 Pk61C-RA 1..868 17..884 4340 100 Plus
CG1210-PH 2268 Pk61C-RH 1..868 17..884 4340 100 Plus
CG1210-PF 2268 Pk61C-RF 1..868 17..884 4340 100 Plus
CG1210-PG 1620 Pk61C-RG 1..220 665..884 1100 100 Plus
CG1210-PB 1620 Pk61C-RB 1..220 665..884 1100 100 Plus
CG1210-PE 1620 Pk61C-RE 1..220 665..884 1100 100 Plus
CG1210-PC 2460 Pk61C-RC 1064..1092 888..916 145 100 Plus
CG1210-PD 2511 Pk61C-RD 1115..1143 888..916 145 100 Plus
CG1210-PA 2268 Pk61C-RA 872..900 888..916 145 100 Plus
CG1210-PH 2268 Pk61C-RH 872..900 888..916 145 100 Plus
CG1210-PF 2268 Pk61C-RF 872..900 888..916 145 100 Plus
CG1210-PG 1620 Pk61C-RG 224..252 888..916 145 100 Plus
CG1210-PB 1620 Pk61C-RB 224..252 888..916 145 100 Plus
CG1210-PE 1620 Pk61C-RE 224..252 888..916 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk1-RJ 4959 CG1210-RJ 617..1536 17..935 4530 99.7 Plus
Pdk1-RF 4162 CG1210-RF 422..1341 17..935 4530 99.7 Plus
Pdk1-RH 4347 CG1210-RH 607..1526 17..935 4530 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 135966..136339 224..597 1855 99.7 Plus
3L 28110227 3L 141765..142112 589..935 1630 98.6 Plus
3L 28110227 3L 135635..135843 17..225 1045 100 Plus
Blast to na_te.dros performed 2015-02-13 09:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2686 125..474 268 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2660 179..484 190 56.5 Plus

BS10403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:46 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Pk61C-PF 1..919 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:14 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1210-PF 1..919 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:37 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RH 599..1525 10..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:23 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk1-RH 599..1525 10..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:23 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 135627..135842 10..224 98 -> Plus
3L 135967..136335 225..593 100 -> Plus
3L 141770..142111 594..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:37 Download gff for BS10403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 135627..135842 10..224 98 -> Plus
arm_3L 135967..136335 225..593 100 -> Plus
arm_3L 141770..142111 594..934 99   Plus

BS10403.pep Sequence

Translation from 16 to 2283

> BS10403.pep
MPAMAKEKASATVSLGESNFRDINLKDLAVVVEAASRLHHQQNVCGCGAV
SSTENNNNSRYGSSKYLTNGHTSPLAAAVASNSSSVATTPHCRMLHNCSL
QQYQNDIRQQTEILDMLRQQHQQGYQSQQQQQQPQQQQEQQQQQEQSQQQ
QQLQNPAPRRSPNDFIFGRYIGEGSYSIVYLAVDIHSRREYAIKVCEKRL
ILRERKQDYIKREREVMHQMTNVPGFVNLSCTFQDQRSLYFVMTYARKGD
MLPYINRVGSFDVACTRHYAAELLLACEHMHRRNVVHRDLKPENILLDED
MHTLIADFGSAKVMTAHERALATEHCSEQRRSNSDEDDEDSDRLENEDED
FYDRDSEELDDGDDEQQQEEMDSPRHRQRRYNRHRKASFVGTAQYVSPEV
LQNGPITPAADLWALGCIVYQMIAGLPPFRGSNDYVIFKEILDCAVDFPQ
GFDKDAEDLVRKLLRVDPRDRLGAQDEFGYYESIRAHPFFAGIDWQTLRQ
QTPPPIYPYLPGVSQDEDFRSSYTVPGDLEPGLDERQISRLLSAELGVGS
SVAMPVKRSTAKNSFDLNDAEKLQRLEQQKTDKWHVFADGEVILKKGFVN
KRKGLFARKRMLLLTTGPRLIYIDPVQMIKKGEIPWSPDLRAEYKNFKIF
FVHTPNRTYYLDDPEGYAIHWSEAIENMRKLAYGDPSSTSAVSCSSGSSN
SLAVISNSSAASSSNSPTVKRSSPVNAPQASTASDNRTLGSTRTGTSPSK
KTASK*

BS10403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk1-PJ 836 CG1210-PJ 82..836 1..755 3945 100 Plus
Pdk1-PF 755 CG1210-PF 1..755 1..755 3945 100 Plus
Pdk1-PH 755 CG1210-PH 1..755 1..755 3945 100 Plus
Pdk1-PA 755 CG1210-PA 1..755 1..755 3945 100 Plus
Pdk1-PD 836 CG1210-PD 82..836 1..755 3945 100 Plus