Clone Sequence Records
BS10404.3prime Sequence
893 bp (796 high quality bases) assembled on 2006-04-19
> BS10404.3prime
ATGGTCTAGAAAGCTTTCAGGGATTGCTTCTACTGCTGCAGCTGGTCACC
GAATTGTTGCTGCTGCTCTTGCCGCCCTTGTTACTGGCGGCAGTGTTGCA
GCATGTGGTTGTGGAGGAGATGCCGCTCCTGGCCCCCGTCTCATCGCCCT
CATCGCCCAGGTACTCGTCCGGCTTGTGACTAGAGGCGGGAGGCGTCAGA
AGACTTTCGGGAGCGCGCAGCGCGGTGGCCGGGGAAGCTTGAATCCTAGC
GCGCATGGCATGCGCCGCATCCTGGGCCATAAGCACTTCGTCATACATAT
CCATGGTAGTTGTGTGCGTTTGGATAATGTGCGAGTCGTCGGTGACAATA
TTGGGGCAGATTAGTCCCAGGCCAAATTTGTTGCTGACTTGCTCATTCTG
CTCGTTCAGCTGCAGGTAGGGGGCCTTCTGGGAGATCACTCGGAAGAATG
GCTCCATCCAGCGAGCACAAGGCTGAATCACCTGCCAATCCAGACCAGAA
CAGCGTAAAGCCATCTCCCGACTAAATGTATGACTGATGGCGGCCGCTGC
CAGCACCGAGTAGGAATAGTTGGCCATGCCCACGTCCAGGGTGCACAGAT
CTAGCAGCTGTGAGGTTTGCACAAACTCAAAGCCAGAGAATTGCGGGTAG
ATAAAGGCATCGTCCGCCTCCGCGCTCTTTTGCCTGCCAATCTGGGAGAA
CGAGGCCGGAGTGCGGTTGTTCACATTCAGTTGCATATAGACGCCCAGCC
AGCCGGTAATGGTGATGGGGCTGATGTCCCAGTCGAGCGCCTGCAGCAGA
ATCTTCTCGTGGTTAAGGATGTCCCGCTCTGTGCAGGCGCCATCCGTCAC
ATAAGCAAACTCCCCGATCTTTGGCGGATAAATCTCCTCTACC
BS10404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3938-PC | 2130 | CycE-RC | 1254..2130 | 893..17 | 4385 | 100 | Minus |
| CG3938-PA | 2130 | CycE-RA | 1254..2130 | 893..17 | 4385 | 100 | Minus |
| CG3938-PE | 2130 | CycE-RE | 1254..2130 | 893..17 | 4385 | 100 | Minus |
| CG3938-PD | 2130 | CycE-RD | 1254..2130 | 893..17 | 4385 | 100 | Minus |
| CG3938-PB | 1809 | CycE-RB | 933..1809 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RF | 3363 | CG3938-RF | 1390..2266 | 893..17 | 4385 | 100 | Minus |
| CycE-RB | 3856 | CG3938-RB | 1680..2556 | 893..17 | 4385 | 100 | Minus |
| CycE-RD | 3946 | CG3938-RD | 1770..2646 | 893..17 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15729565..15729940 | 518..893 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 15728881..15729156 | 17..292 | 1380 | 100 | Plus |
| 2L | 23513712 | 2L | 15729273..15729500 | 292..519 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1067..1186 | 131..18 | 163 | 62.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6960 | 131..17 | 146 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6852 | 131..25 | 145 | 62.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6820 | 114..24 | 144 | 66 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6841 | 131..24 | 144 | 59.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6873 | 131..25 | 143 | 66.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2423 | 131..54 | 138 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2883..2976 | 114..20 | 131 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2399 | 137..24 | 127 | 60 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2725..2896 | 187..17 | 126 | 58.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2366 | 84..24 | 125 | 67.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2848 | 123..25 | 125 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1577 | 87..24 | 124 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6798 | 101..25 | 115 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2491 | 131..34 | 112 | 57.1 | Minus |
BS10404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:47 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3938-PA | 1254..2130 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:15 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3938-PB | 933..1809 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:58 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RD | 1770..2652 | 11..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:08 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RD | 1770..2652 | 11..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:08 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15728878..15729156 | 14..292 | 99 | <- | Plus |
| 2L | 15729274..15729499 | 293..518 | 100 | <- | Plus |
| 2L | 15729566..15729940 | 519..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:58 Download gff for
BS10404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15728878..15729156 | 14..292 | 99 | <- | Plus |
| arm_2L | 15729274..15729499 | 293..518 | 100 | <- | Plus |
| arm_2L | 15729566..15729940 | 519..893 | 100 | | Plus |
BS10404.5prime Sequence
870 bp (849 high quality bases) assembled on 2006-04-19
> BS10404.5prime
GAAGTTATCAGTCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCA
GCAGCACTGAGCCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGA
GAAGTGAGCAGCAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAG
CAGCAGCGATAGCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCAT
CAACATCGTTCTCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGA
ACCTCAGCAGCCTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAA
TCTTGCAGCATCCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGC
GTTTAAGCAGCGATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCA
TCAGCTAAGCGCCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGG
CAATCTGTCATCGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGG
TTGATGGCCAGAGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCC
GAGGATCTGTCGGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAG
TCCGCCGAGTCCGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCT
ACGCTGCGGAGCAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAG
GATGATGACCTTTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGA
TGATGAGGATGACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCT
CCACAATTTCTCCAGCCTCCTCCGGCTGCAGCCAGCAGCAGGCGGTGAAT
GGAGAGCGTACTCCCGGCCT
BS10404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3938-PC | 2130 | CycE-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3938-PA | 2130 | CycE-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3938-PE | 2130 | CycE-RE | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3938-PD | 2130 | CycE-RD | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3938-PB | 1809 | CycE-RB | 36..533 | 373..870 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 3946 | CG3938-RD | 517..1370 | 17..870 | 4270 | 100 | Plus |
| CycE-RE | 3703 | CG3938-RE | 274..1127 | 17..870 | 4270 | 100 | Plus |
| CycE-RA | 3653 | CG3938-RA | 427..1280 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15730340..15730838 | 870..372 | 2495 | 100 | Minus |
| 2L | 23513712 | 2L | 15737627..15737966 | 374..35 | 1700 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 12:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7016 | 44..350 | 200 | 56.1 | Plus |
BS10404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:48 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3938-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:17 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3938-PD | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:29 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1280 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:29:12 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1280 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:29:12 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15730340..15730836 | 374..870 | 100 | <- | Minus |
| 2L | 15737628..15737964 | 37..373 | 100 | <- | Minus |
| 2L | 15740772..15740791 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:29 Download gff for
BS10404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15730340..15730836 | 374..870 | 100 | <- | Minus |
| arm_2L | 15737628..15737964 | 37..373 | 100 | <- | Minus |
| arm_2L | 15740772..15740791 | 17..36 | 100 | | Minus |
BS10404.complete Sequence
2162 bp assembled on 2007-11-30
GenBank Submission: FJ636640
> BS10404.complete
GAAGTTATCAGTCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCA
GCAGCACTGAGCCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGA
GAAGTGAGCAGCAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAG
CAGCAGCGATAGCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCAT
CAACATCGTTCTCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGA
ACCTCAGCAGCCTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAA
TCTTGCAGCATCCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGC
GTTTAAGCAGCGATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCA
TCAGCTAAGCGCCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGG
CAATCTGTCATCGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGG
TTGATGGCCAGAGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCC
GAGGATCTGTCGGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAG
TCCGCCGAGTCCGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCT
ACGCTGCGGAGCAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAG
GATGATGACCTTTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGA
TGATGAGGATGACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCT
CCACAATTTCTCCAGCCTCCTCCGGCTGCAGCCAGCAGCAGGCGGTGAAT
GGAGAGCGTACTCCCGGCCTGCCAAAACATCAGGAGCAGATCCATCATCC
GGTCAGTGACCTGATGATTAACATGCGGACGCCCATGTCGCCGGCTGTGG
AGAACGGTCTGCGCCAGTGCCCACTTCCTGCGCTCGCCTGGGCTAACGCC
GCCGATGTTTGGCGCCTGATGTGTCACCGGGATGAGCAGGACTCGCGTCT
GCGCAGCATTTCGATGCTGGAACAGCATCCCGGACTGCAACCACGTATGC
GTGCCATTCTCTTGGACTGGTTGATCGAGGTCTGTGAAGTTTACAAGCTG
CATCGGGAGACCTTCTACTTGGCCGTCGACTACCTGGATCGCTATTTGCA
TGTGGCGCATAAGGTGCAGAAGACGCACTTGCAGTTGATCGGCATCACCT
GCCTGTTTGTGGCCGCCAAGGTAGAGGAGATTTATCCGCCAAAGATCGGG
GAGTTTGCTTATGTGACGGATGGCGCCTGCACAGAGCGGGACATCCTTAA
CCACGAGAAGATTCTGCTGCAGGCGCTCGACTGGGACATCAGCCCCATCA
CCATTACCGGCTGGCTGGGCGTCTATATGCAACTGAATGTGAACAACCGC
ACTCCGGCCTCGTTCTCCCAGATTGGCAGGCAAAAGAGCGCGGAGGCGGA
CGATGCCTTTATCTACCCGCAATTCTCTGGCTTTGAGTTTGTGCAAACCT
CACAGCTGCTAGATCTGTGCACCCTGGACGTGGGCATGGCCAACTATTCC
TACTCGGTGCTGGCAGCGGCCGCCATCAGTCATACATTTAGTCGGGAGAT
GGCTTTACGCTGTTCTGGTCTGGATTGGCAGGTGATTCAGCCTTGTGCTC
GCTGGATGGAGCCATTCTTCCGAGTGATCTCCCAGAAGGCCCCCTACCTG
CAGCTGAACGAGCAGAATGAGCAAGTCAGCAACAAATTTGGCCTGGGACT
AATCTGCCCCAATATTGTCACCGACGACTCGCACATTATCCAAACGCACA
CAACTACCATGGATATGTATGACGAAGTGCTTATGGCCCAGGATGCGGCG
CATGCCATGCGCGCTAGGATTCAAGCTTCCCCGGCCACCGCGCTGCGCGC
TCCCGAAAGTCTTCTGACGCCTCCCGCCTCTAGTCACAAGCCGGACGAGT
ACCTGGGCGATGAGGGCGATGAGACGGGGGCCAGGAGCGGCATCTCCTCC
ACAACCACATGCTGCAACACTGCCGCCAGTAACAAGGGCGGCAAGAGCAG
CAGCAACAATTCGGTGACCAGCTGCAGCAGTAGAAGCAATCCCTGAAAGC
TTTCTAGACCAT
BS10404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 2130 | CG3938-PD | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| CycE-RE | 2130 | CG3938-PE | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| CycE-RA | 2130 | CG3938-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 3946 | CG3938-RD | 517..2646 | 17..2146 | 10650 | 100 | Plus |
| CycE-RE | 3703 | CG3938-RE | 274..2403 | 17..2146 | 10650 | 100 | Plus |
| CycE-RA | 3653 | CG3938-RA | 427..2556 | 17..2146 | 10650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15729565..15730838 | 1645..372 | 6370 | 100 | Minus |
| 2L | 23513712 | 2L | 15737627..15737966 | 374..35 | 1700 | 100 | Minus |
| 2L | 23513712 | 2L | 15728881..15729156 | 2146..1871 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 15729273..15729500 | 1871..1644 | 1140 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1067..1186 | 2032..2145 | 163 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6960 | 2032..2146 | 146 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6852 | 2032..2138 | 145 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6820 | 2049..2139 | 144 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6841 | 2032..2139 | 144 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6873 | 2032..2138 | 143 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2423 | 2032..2109 | 138 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2883..2976 | 2049..2143 | 131 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2399 | 2026..2139 | 127 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2366 | 2079..2139 | 125 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2848 | 2040..2138 | 125 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1577 | 2076..2139 | 124 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6798 | 2062..2138 | 115 | 61 | Plus |
BS10404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:04 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RE | 1..2130 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:51 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RE | 279..2407 | 17..2145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:31 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..2555 | 17..2145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:12 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RE | 279..2407 | 17..2145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:56 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..2555 | 17..2145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:56 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15728882..15729156 | 1871..2145 | 100 | <- | Minus |
| 2L | 15729274..15729499 | 1645..1870 | 100 | <- | Minus |
| 2L | 15729566..15730836 | 374..1644 | 100 | <- | Minus |
| 2L | 15737628..15737964 | 37..373 | 100 | <- | Minus |
| 2L | 15740772..15740791 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:31 Download gff for
BS10404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15728882..15729156 | 1871..2145 | 100 | <- | Minus |
| arm_2L | 15729274..15729499 | 1645..1870 | 100 | <- | Minus |
| arm_2L | 15729566..15730836 | 374..1644 | 100 | <- | Minus |
| arm_2L | 15737628..15737964 | 37..373 | 100 | <- | Minus |
| arm_2L | 15740772..15740791 | 17..36 | 100 | | Minus |
BS10404.pep Sequence
Translation from 16 to 2145
> BS10404.pep
MGLNAKSVCSTSSTEPNGSIVTTAPSNGEVSSSIVVVVSSSSISSSSDSP
IAILPHPDPIPSTSFSSASQRSEEELPGTSAASRTDEMCSCDSQNLAAST
AATSNGNKRKRRLSSDSNEDPELGFEPPSAKRQQRLPALYGSEQGNLSSV
ASSVYTSPVVSVDGQSTQELLSIRSSPAEDLSEAPHSPLPDSPDSPPSPD
RGSKQTPVVVRYAAEQVVTSTVVTQKTEDDDLLDDSCEDYSYDEDDEDDV
EEEDDDVEIYSSTISPASSGCSQQQAVNGERTPGLPKHQEQIHHPVSDLM
INMRTPMSPAVENGLRQCPLPALAWANAADVWRLMCHRDEQDSRLRSISM
LEQHPGLQPRMRAILLDWLIEVCEVYKLHRETFYLAVDYLDRYLHVAHKV
QKTHLQLIGITCLFVAAKVEEIYPPKIGEFAYVTDGACTERDILNHEKIL
LQALDWDISPITITGWLGVYMQLNVNNRTPASFSQIGRQKSAEADDAFIY
PQFSGFEFVQTSQLLDLCTLDVGMANYSYSVLAAAAISHTFSREMALRCS
GLDWQVIQPCARWMEPFFRVISQKAPYLQLNEQNEQVSNKFGLGLICPNI
VTDDSHIIQTHTTTMDMYDEVLMAQDAAHAMRARIQASPATALRAPESLL
TPPASSHKPDEYLGDEGDETGARSGISSTTTCCNTAASNKGGKSSSNNSV
TSCSSRSNP*
BS10404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-PD | 709 | CG3938-PD | 1..709 | 1..709 | 3672 | 100 | Plus |
| CycE-PE | 709 | CG3938-PE | 1..709 | 1..709 | 3672 | 100 | Plus |
| CycE-PA | 709 | CG3938-PA | 1..709 | 1..709 | 3672 | 100 | Plus |
| CycE-PC | 709 | CG3938-PC | 1..709 | 1..709 | 3672 | 100 | Plus |
| CycE-PF | 712 | CG3938-PF | 9..712 | 6..709 | 3644 | 99.9 | Plus |
