Clone Sequence Records
BS10406.3prime Sequence
948 bp (858 high quality bases) assembled on 2006-04-19
> BS10406.3prime
ATGGTCTAGAAAGCTTTTAGCTAAGGCGTATTTTCGATGCCAGAAAATAC
AGCTGCAGGCAGGTGGTCAGCATGACCGTCATATTGCCAATGGCGATGGT
CATGTGAATGCGCCGGAATCCCTTGTGGATGCGCTGATAGTGCGGGCAGT
CGACGAGGTCGCCCTGGACAAGGCTGCCCACCTCCTGGCCACTGCCGATC
GCATCCTCGATCCTGTACTTCTCGTGCATCAGCTGCAGCATCGGTGGCAC
CAGGTACAGGCGCACCACCACCTCAATTCCCGCCGCCAGGGCCAGCGATC
CCATCTGGATGCCCGCCGATGTCGTCCATCCGCTGAGGAAATACTTGGCA
TACACCACCAGCATCGTCAGACTGAGCATGGCGTTCAGGGCGAAGTAGCG
CGGGAAGAGGATCTGCTGGCACTGCCCGAAAACGTGGCGGGGCAGAGAGA
AATACAGCGAGAGTCCCGAGACAAATGTCATCCAGATCTGAGACCCAAAG
TGGGTGGCAAAGGCGCCCAGGAAGACCAAGGCCGCCATAACTCCGCCCGT
TGCTGTTCTCGTCGATGCTGCTGTTGCAGACGCTGCTGCTTCTGCTGTTG
CCACCGTTGTCGTTGGGTCGATGAGGTCGCGTCCCACAGTCATCAGCACA
AAGGCCAAGATGCAAACAGCTATCAAGTGTGCTGGCTGTGTCGTACGCGT
CAGAATTGTGTACAGGCGACTGGCCTGCAGCTTGGCCACCAGGCAGGTGA
TTCGCTCGGACACCTGCCTAGTCATCTGGGTGCCGATGGCCAGGGCGTCG
TCCATTGACGGCTCCATGGAGCTCAGCTTGCGCTGCTGTTGAGCCTTCAG
GGCGGCGGCGGGCGTGCTGGTGGCCAAAGGCTCCTCCTCCTGCAACTCCA
TCTCCTTGAGCATCTGCTGCTGCTGCTCCTGCTGCAGCTTGCGAAATC
BS10406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-PA | 1311 | CG32512-RA | 380..1311 | 948..17 | 4635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 701..1632 | 948..17 | 4645 | 99.9 | Minus |
| CG32512-RA | 2215 | CG32512-RA | 701..1632 | 948..17 | 4645 | 99.9 | Minus |
| CG32512-RC | 1412 | CG32512-RC | 136..829 | 710..17 | 3470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21062967..21063416 | 17..466 | 2250 | 100 | Plus |
| X | 23542271 | X | 21063801..21064043 | 465..707 | 1215 | 100 | Plus |
| X | 23542271 | X | 21066600..21066840 | 708..948 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 04:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2390 | 615..547 | 167 | 73.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1144 | 609..541 | 156 | 69.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6857 | 615..549 | 155 | 70.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 615..531 | 154 | 65.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6781 | 631..547 | 152 | 65.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1162 | 619..547 | 151 | 69.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2666 | 641..556 | 148 | 65.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6828 | 615..554 | 148 | 71 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6818 | 615..549 | 145 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2832 | 627..549 | 139 | 67.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1151 | 601..549 | 139 | 73.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6898 | 615..547 | 137 | 68.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2360 | 602..547 | 136 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2432 | 615..550 | 131 | 68.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2817 | 604..549 | 127 | 69.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 612..547 | 125 | 68.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1112 | 600..549 | 125 | 71.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1121 | 615..531 | 121 | 64 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 508..567 | 622..564 | 117 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1589 | 615..562 | 116 | 70.2 | Minus |
BS10406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:51 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-PA | 380..1311 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:21 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-PA | 380..1311 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:55 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 701..1635 | 13..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:04 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 701..1635 | 13..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:04 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21062964..21063415 | 13..465 | 99 | <- | Plus |
| X | 21063802..21064043 | 466..707 | 100 | <- | Plus |
| X | 21066600..21066840 | 708..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:55 Download gff for
BS10406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20933991..20934442 | 13..465 | 99 | <- | Plus |
| arm_X | 20934829..20935070 | 466..707 | 100 | <- | Plus |
| arm_X | 20937627..20937867 | 708..948 | 99 | | Plus |
BS10406.5prime Sequence
948 bp (845 high quality bases) assembled on 2006-04-19
> BS10406.5prime
GAAGTTATCAGTCGACATGTGCCACAATTCAGGGATCGTGGAGAAAAACA
ACGAGCAGCAGATCGAGCGCTACATGGCCTGTGGGATGCCATCGAAGGCG
GTGAAGAGTGTCAAGTACACGCTGAAGAAGCGCGAGAAGAAGGAGCAGCA
GCGGAGAGATCTGGAAAAGGATCTGCACAGGGAACAGCAGTTCCTTGAGG
AACTCGAGCTAAGCAGTAGCGCCAGCGACTCCTCCTCCTCCTCCTCGTCC
TCCTCGGTCACCGGCAGCGATAGCGAGGATAGCGGCGTTACCGAAACCGT
TTTGAAATCGTCGCCGTCGGCGGATATGACAACCAGTCCAAAGGTCATCT
CACCGGCCCCCACACCCAGAAGCGACCTCTTACGATTCTGCCCGCGATTT
CGCAAGCTGCAGCAGGAGCAGCAGCAGCAGATGCTCAAGGAGATGGAGTT
GCAGGAGGAGGAGCCCTTGGCCACCAGCACGCCCGCCGCCGCCCTGAAGG
CTCAACAGCAGCGCAAGCTGAGCTCCATGGAGCCGTCAATGGACGACGCC
CTGGCCATCGGCACCCAGATGACTAGGCAGGTGTCCGAGCGAATCACCTG
CCTGGTGGCCAAGCTGCAGGCCAGTCGCCTGTACACAATTCTGACGCGTA
CGACACAGCCAGCACACTTGATAGCTGTTTGCATCTTGGCCTTTGTGCTG
ATGACTGTGGGACGCGACCTCATCGACCCAACGACAACGGTGGCAACAGC
AGAAGCAGCAGCGTCTGCAACAGCAGCATCGACGAGAACAGCAACGGGCG
GAGTTATGGCGGCCTTGGTCTTCCTGGGCGCCTTTGCCACCCACTTTGGG
TCTCAGATCTGGATGACATTTGTCTCGGGACTCTCGCTGTATTTCTCTCT
GCCCCGCCACGTTTTCGGGCAGTGCCAGCAGATCCCTCTCCCGCGCTA
BS10406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-PA | 1311 | CG32512-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 322..1253 | 17..948 | 4615 | 99.8 | Plus |
| CG32512-RA | 2215 | CG32512-RA | 322..1253 | 17..948 | 4615 | 99.8 | Plus |
| CG32512-RC | 1412 | CG32512-RC | 136..450 | 634..948 | 1530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21066600..21067219 | 636..17 | 3100 | 100 | Minus |
| X | 23542271 | X | 21063801..21064043 | 879..637 | 1215 | 100 | Minus |
| X | 23542271 | X | 21063346..21063416 | 948..878 | 310 | 95.8 | Minus |
Blast to na_te.dros performed 2015-02-11 12:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2390 | 729..797 | 167 | 73.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1144 | 735..803 | 156 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6857 | 729..795 | 155 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 729..813 | 154 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6781 | 713..797 | 152 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1162 | 725..797 | 151 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2666 | 703..788 | 148 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6828 | 729..790 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6818 | 729..795 | 145 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2832 | 717..795 | 139 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1151 | 743..795 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6898 | 729..797 | 137 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2360 | 742..797 | 136 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2432 | 729..794 | 131 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2817 | 740..795 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 732..797 | 125 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1112 | 744..795 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1121 | 729..813 | 121 | 64 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 508..567 | 722..780 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1589 | 729..782 | 116 | 70.2 | Plus |
BS10406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:52 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:22 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:29:24 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1252 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:09 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1252 | 17..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:09 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21063802..21064043 | 637..878 | 100 | <- | Minus |
| X | 21063347..21063415 | 879..947 | 97 | <- | Minus |
| X | 21066600..21067219 | 17..636 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:29:24 Download gff for
BS10406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20934374..20934442 | 879..947 | 97 | <- | Minus |
| arm_X | 20934829..20935070 | 637..878 | 100 | <- | Minus |
| arm_X | 20937627..20938246 | 17..636 | 100 | | Minus |
BS10406.complete Sequence
1343 bp (1343 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636642
> BS10406.complete
GAAGTTATCAGTCGACATGTGCCACAATTCAGGGATCGTGGAGAAAAACA
ACGAGCAGCAGATCGAGCGCTACATGGCCTGTGGGATGCCATCGAAGGCG
GTGAAGAGTGTCAAGTACACGCTGAAGAAGCGCGAGAAGAAGGAGCAGCA
GCGGAGAGATCTGGAAAAGGATCTGCACAGGGAACAGCAGTTCCTTGAGG
AACTCGAGCTAAGCAGTAGCGCCAGCGACTCCTCCTCCTCCTCCTCGTCC
TCCTCGGTCACCGGCAGCGATAGCGAGGATAGCGGCGTTACCGAAACCGT
TTTGAAATCGTCGCCGTCGGCGGATATGACAACCAGTCCAAAGGTCATCT
CACCGGCCCCCACACCCAGAAGCGACCTCTTACGATTCTGCCCGCGATTT
CGCAAGCTGCAGCAGGAGCAGCAGCAGCAGATGCTCAAGGAGATGGAGTT
GCAGGAGGAGGAGCCCTTGGCCACCAGCACGCCCGCCGCCGCCCTGAAGG
CTCAACAGCAGCGCAAGCTGAGCTCCATGGAGCCGTCAATGGACGACGCC
CTGGCCATCGGCACCCAGATGACTAGGCAGGTGTCCGAGCGAATCACCTG
CCTGGTGGCCAAGCTGCAGGCCAGTCGCCTGTACACAATTCTGACGCGTA
CGACACAGCCAGCACACTTGATAGCTGTTTGCATCTTGGCCTTTGTGCTG
ATGACTGTGGGACGCGACCTCATCGACCCAACGACAACGGTGGCAACAGC
AGAAGCAGCAGCGTCTGCAACAGCAGCATCGACGAGAACAGCAACGGGCG
GAGTTATGGCGGCCTTGGTCTTCCTGGGCGCCTTTGCCACCCACTTTGGG
TCTCAGATCTGGATGACATTTGTCTCGGGACTCTCGCTGTATTTCTCTCT
GCCCCGCCACGTTTTCGGGCAGTGCCAGCAGATCCTCTTCCCGCGCTACT
TCGCCCTGAACGCCATGCTCAGTCTGACGATGCTGGTGGTGTATGCCAAG
TATTTCCTCAGCGGATGGACGACATCGGCGGGCATCCAGATGGGATCGCT
GGCCCTGGCGGCGGGAATTGAGGTGGTGGTGCGCCTGTACCTGGTGCCAC
CGATGCTGCAGCTGATGCACGAGAAGTACAGGATCGAGGATGCGATCGGC
AGTGGCCAGGAGGTGGGCAGCCTTGTCCAGGGCGACCTCGTCGACTGCCC
GCACTATCAGCGCATCCACAAGGGATTCCGGCGCATTCACATGACCATCG
CCATTGGCAATATGACGGTCATGCTGACCACCTGCCTGCAGCTGTATTTT
CTGGCATCGAAAATACGCCTTAGCTAAAAGCTTTCTAGACCAT
BS10406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 1311 | CG32512-PD | 1..1311 | 17..1327 | 6555 | 100 | Plus |
| CG32512-RA | 1311 | CG32512-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
| CG32512-RC | 702 | CG32512-PC | 9..702 | 634..1327 | 3470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 322..1632 | 17..1327 | 6555 | 100 | Plus |
| CG32512-RA | 2215 | CG32512-RA | 322..1632 | 17..1327 | 6555 | 100 | Plus |
| CG32512-RC | 1412 | CG32512-RC | 136..829 | 634..1327 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21066600..21067219 | 636..17 | 3100 | 100 | Minus |
| X | 23542271 | X | 21062967..21063416 | 1327..878 | 2250 | 100 | Minus |
| X | 23542271 | X | 21063801..21064043 | 879..637 | 1215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2390 | 729..797 | 167 | 73.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1144 | 735..803 | 156 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6857 | 729..795 | 155 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 729..813 | 154 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6781 | 713..797 | 152 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1162 | 725..797 | 151 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6828 | 729..790 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2666 | 703..788 | 148 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6818 | 729..795 | 145 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2832 | 717..795 | 139 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1151 | 743..795 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6898 | 729..797 | 137 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2360 | 742..797 | 136 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2432 | 729..794 | 131 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2817 | 740..795 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 732..797 | 125 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1112 | 744..795 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1121 | 729..813 | 121 | 64 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 508..567 | 722..780 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1589 | 729..782 | 116 | 70.2 | Plus |
BS10406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:10 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 1..1311 | 17..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:36 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 304..1617 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:47 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1630 | 17..1325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:10 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 304..1617 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:11 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1630 | 17..1325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:11 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21062969..21063415 | 879..1325 | 100 | <- | Minus |
| X | 21063802..21064043 | 637..878 | 100 | <- | Minus |
| X | 21066600..21067219 | 17..636 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:47 Download gff for
BS10406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20933996..20934442 | 879..1325 | 100 | <- | Minus |
| arm_X | 20934829..20935070 | 637..878 | 100 | <- | Minus |
| arm_X | 20937627..20938246 | 17..636 | 100 | | Minus |
BS10406.pep Sequence
Translation from 16 to 1326
> BS10406.pep
MCHNSGIVEKNNEQQIERYMACGMPSKAVKSVKYTLKKREKKEQQRRDLE
KDLHREQQFLEELELSSSASDSSSSSSSSSVTGSDSEDSGVTETVLKSSP
SADMTTSPKVISPAPTPRSDLLRFCPRFRKLQQEQQQQMLKEMELQEEEP
LATSTPAAALKAQQQRKLSSMEPSMDDALAIGTQMTRQVSERITCLVAKL
QASRLYTILTRTTQPAHLIAVCILAFVLMTVGRDLIDPTTTVATAEAAAS
ATAASTRTATGGVMAALVFLGAFATHFGSQIWMTFVSGLSLYFSLPRHVF
GQCQQILFPRYFALNAMLSLTMLVVYAKYFLSGWTTSAGIQMGSLALAAG
IEVVVRLYLVPPMLQLMHEKYRIEDAIGSGQEVGSLVQGDLVDCPHYQRI
HKGFRRIHMTIAIGNMTVMLTTCLQLYFLASKIRLS*
BS10406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-PD | 436 | CG32512-PD | 1..436 | 1..436 | 2183 | 100 | Plus |
| CG32512-PA | 436 | CG32512-PA | 1..436 | 1..436 | 2183 | 100 | Plus |
| CG32512-PC | 233 | CG32512-PC | 4..233 | 207..436 | 1163 | 100 | Plus |
| CG32512-PB | 208 | CG32512-PB | 1..208 | 229..436 | 1055 | 100 | Plus |
