Clone BS10407 Report

Search the DGRC for BS10407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:7
Vector:pDNR-Dual
Associated Gene/Transcripttst-RA
Protein status:BS10407.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10407.3prime Sequence

876 bp (867 high quality bases) assembled on 2006-04-19

> BS10407.3prime
ATGGTCTAGAAAGCTTTCACAGTTCTGTGTACAAGGATGCGGTGAAAACA
ATATCGCGCTTGATAGCAGCCGACGCCTCCTCCATCTTCGACTGCAGTCC
CGGATTGCCAATCCGAATGGCGGCCGTTTTAACATCACGCAGCGTTTCAT
TCAGCTGCTGAATGCAGCGAACAATGATGCCCTCCTGCACCGTCGTCAGT
TTCATAATCTCAGCAAAGGGCTTATTTCTAGCCCACTCGTAGACCACCTC
CAGCAGACCAAAGTTCAGGCGATTATCGGTCTCGATGGCTGCCTGAAAGC
GCTGCTCCTCGGCAAGAATTGTATCGTTGATCTGCTCAAATGCCGCCACG
CACTCCTTCAACGCCTCTGGTATTACCGGCTTATCCTGCATCTTCGCCTG
GAAGACAAGGCCGGAGAGCAAGGCGGCTATTTCTGCCGGCTCGAGATCGT
TGAACATGTTGCATAGTATGAGCTCCGTGATAAGTAGCTCATTTTGGCCC
ATCTCACAGGCCACTTTTCCCTTAAGTGTGACCTCGTCCAGTTCATCTAT
GTATTTCAGGGCTCGCAGCACCTTCAATTTGTTACAATAGTCCGGATAGA
GGGTCAAATTTCTCGCGGAGTTCTTGAAGCGCAGCTCCTCGATGTGAATC
TCCAGCATTCGGCGCTCGTACACTTTGGCGAACTCCTGTTCGAATCCGGC
AATGTTGGTATGTGGCAGAAATTCGCCAACCTTACGGAGCAGGTGATCAA
CGTAGTTCAGCATGGCCACCTCGCTGTCAGCGTTCACGATTATTTCCTTG
GAAAGATTAACGTATTTGATGTTATCCGGGTTGTCAATGTAACTCTCATT
GAGCTGGTTTAGCTCGGTCACCGCCT

BS10407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10210-PA 3594 tst-RA 2735..3594 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 2832..3691 876..17 4300 100 Minus
tst-RA 4332 CG10210-RA 2832..3691 876..17 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23769309..23769964 221..876 3280 100 Plus
3R 32079331 3R 23769040..23769245 17..222 1030 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:36:35 has no hits.

BS10407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:53 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-PA 2735..3594 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:23 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10210-PA 2735..3594 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:26 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 2832..3691 17..876 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:22 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 2832..3691 17..876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:22 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23769040..23769243 17..220 100 <- Plus
3R 23769309..23769964 221..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:26 Download gff for BS10407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19594762..19594965 17..220 100 <- Plus
arm_3R 19595031..19595686 221..876 100   Plus

BS10407.5prime Sequence

949 bp (758 high quality bases) assembled on 2006-04-19

> BS10407.5prime
GAAGTTATCAGTCGACATGAATGAGATTAGGGGCGAGGATAACCTCGAAC
GGCTGCGCAACTATATCCTGCGACCGGAGCTGTCCCTCCACAATCCCCTG
CCGGATGTTTTGCCCCGCAAATTCGATCCGATGCGCCTGTTGCATGCGCC
CCGTTGCCCGGGAAGCACTAAGTTGGCTCCTCGCCGCGACCAGAGTGGTC
ACATACTTGAGTTCGTGGAATTGGACTTGGAGGCCGTGGGCGCCAATGCC
AACAACTCGATGTCCATGCAGCGGGAGCCGGGCTTGCTGGAAGACGCGAC
GCGTGGCTCCCACTCCAATTTTCCCTTTTGGCCAGGCGGTTTCGATGAGC
AGCGCCAGCAGATCGCAGCTCTGGATGTCAGCAACTTTCAGTTCGGGGAC
AAGCTGCTAACGGTGCCACCGGGCTTCAGCTCTGGCTACGACTTCTTCCA
ATCGCAATCTGTAACACTGCCGCCTGTGGTCGCCGATCCCAGTAACGTTG
ATCTATTGGAAAACCTAGAACAGGATCTGGACGTCCAGGAGTGGATGAAG
CTTACGCGTAGTGAGGAAACAAGCTCCACTGGAACGCCTAAAAGTCCAAA
ACAGTCGAACGTGCAATTACCTTCAGAGGAGTTCAGAGACGTGGACGATC
ACATTATGAAGGCTGACCTAAAGCCTGTGCTAAACATTTCCACCACAACC
AAGAACTTCAAGAGCGATTGGGCCGAAATGGTGGACATAAGCCAACCCAT
CAATAACTTTAAAGAGCAGATACCATGCCCCGCCATGGATTTCCCCTTCG
AACTGGATGTCTTTCAAAAGCAGGCCATTCTTCAGCTGGAACAACGCCAG
TACGTTTTTCGTGCAGCGCATACATCTGCTGGCAAGACAGTTGTAGCTGA
ATATGCCATCGCTCTGTCCAAGCGTGATCTCACCCGCACCATCTACACA

BS10407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10210-PA 3594 tst-RA 1..842 17..858 4160 99.7 Plus
CG10210-PA 3594 tst-RA 846..933 862..949 440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 98..1030 17..949 4590 99.6 Plus
tst-RA 4332 CG10210-RA 98..1030 17..949 4590 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23771830..23772762 949..17 4590 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 00:49:49 has no hits.

BS10407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:54 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:24 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10210-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:04 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..1029 17..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:06 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..1029 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:06 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23771831..23772762 17..948 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:04 Download gff for BS10407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19597553..19598484 17..948 99   Minus

BS10407.complete Sequence

3626 bp assembled on 2007-11-30

GenBank Submission: FJ636643

> BS10407.complete
GAAGTTATCAGTCGACATGAATGAGATTAGGGGCGAGGATAACCTCGAAC
GGCTGCGCAACTATATCCTGCGACCGGAGCTGTCCCTCCACAATCCCCTG
CCGGATGTTTTGCCCCGCAAATTCGATCCGATGCGCCTGTTGCATGCGCC
CCGTTGCCCGGGAAGCACTAAGTTGGCTCCTCGCCGCGACCAGAGTGGTC
ACATACTTGAGTTCGTGGAATTGGACTTGGAGGCCGTGGGCGCCAATGCC
AACAACTCGATGTCCATGCAGCGGGAGCCGGGCTTGCTGGAAGACGCGAC
GCGTGGCTCCCACTCCAATTTTCCCTTTTGGCCAGGCGGTTTCGATGAGC
AGCGCCAGCAGATCGCAGCTCTGGATGTCAGCAACTTTCAGTTCGGGGAC
AAGCTGCTAACGGTGCCACCGGGCTTCAGCTCTGGCTACGACTTCTTCCA
ATCGCAATCTGTAACACTGCCGCCTGTGGTCGCCGATCCCAGTAACGTTG
ATCTATTGGAAAACCTAGAACAGGATCTGGACGTCCAGGAGTGGATGAAG
CTTACGCGTAGTGAGGAAACAAGCTCCACTGGAACGCCTAAAAGTCCAAA
ACAGTCGAACGTGCAATTACCTTCAGAGGAGTTCAGAGACGTGGACGATC
ACATTATGAAGGCTGACCTAAAGCCTGTGCTAAACATTTCCACCACAACC
AAGAACTTCAAGAGCGATTGGGCCGAAATGGTGGACATAAGCCAACCCAT
CAATAACTTTAAAGAGCAGATACCATGCCCCGCCATGGATTTCCCCTTCG
AACTGGATGTCTTTCAAAAGCAGGCCATTCTCAAGCTGGAACAACGCCAG
TACGTTTTCGTTGCAGCGCATACATCTGCTGGCAAGACAGTTGTAGCTGA
ATATGCCATCGCTCTGTCCAAGCGTGATCTCACCCGCACCATCTACACAT
CGCCGATCAAGGCGTTGTCCAATCAGAAGTACCGCGACTTCCGAAAAACC
TTCAAGGATGTGGGCCTTATTACAGGTGACCTGCAGATAGAGCCCACCGC
CTCTTGTCTGATCATGACCACCGAGATTCTCCGCTCAATGCTGTATTGCG
GCAGCGATGTCACGCGGGATCTGGAGTGGGTGATCTTCGACGAGGTGCAC
TATATTAATAACCCAGAAAGAGGACATGTCTGGGAGGAGGTCATTATACT
CCTGCCCGAACATGTTAACATTATAATGCTCAGTGCCACCGTGCCCAATA
CCTTGGAATTGGCCGACTGGGTTGGGAGCACCAAGAAGAGAAAGGTCTAT
GTGATCAGCACTTTAAAACGACCAGTGCCTCTGACGCATTTCCTCTATAC
TGGTGCTGGAGGAAAGAGTCGCGATGACATCTTCCTCCTGGTGGACGCCC
AGGGAAAATATCTGCAGGGTAACTACGAGAAGGCCGTGGAGCGCAAGAAG
GAGATGCAAGGCAAGGCCAAGGGCGGCGGTGGTGGGCCAAGAAACCATTT
AAATGCCAAGCAGGAGCAGTACACCTGGATCGGACTAATTGACTTCCTGA
GGCGGAGCAACATGATGCCAGTGGTGGCTTTCACTCTGTCCCGCAATCGG
TGCGACTCCAATTTGGCCGCTTTGCAGTCAGTGGACCTGAACACGGAAAA
GGAGAAGGGTGCAGTGCAGAAGTTCTTCCTGCAGTGTCTGGCAAAGCTGA
AGCCACCGGACCGTACAATTCCGCAGGTTCTTGTTCTCAAGGACGCTTTG
GAGAGAGGAATAGGTGTGCATCATAGCGGCATCTTGCCCATTCTTAAGGA
GATTGTCGAGATGCTCTTTCAAAATGGGCTAGTTAAGCTGCTTTTCGCCA
CCGAAACGTTTGCCATGGGCGTCAACATGCCCGCGCGCACTGTGGTCTTC
GACTCCTGCAAAAAGTTTGACGGACTGGAGATGCGTAACCTGAAACCAGG
CGAATACATCCAAATGGCCGGCAGAGCTGGACGCCGTGGGCACGACGAGA
CAGGTACGGCGATCATTATGTGCAAGGGCAGTGTGCCACCATCGATGGAG
CTACGGCCCATGATTCTGGGCCTGCCGGAGAAGTTGCAGTCACAGTTCAT
TCTGCGCTATGCGGTAATCCTCACATGTCTGCGCATCGAGAGTATCAAGG
TGGAGGATATCATGAAGTTCAGTTTCAAGGAGTTTAACCTAAAGCTCCAA
TTGCCTACGCAGCAGAAGCAACTTCGTCTGGCCGAAGACAAGTTTGCCAT
GCTCCCAACTCTCGGCGAACATCTGCAACCACTTGTCAATTTTTATGACA
AAGCCGTGGAGTATTGGAAAGAAAAGCACCGCATCATGAAATTTGTTGTT
ACTCAACCCAAGATCCAAAAGGAACTGAAAGCTGGCCGCGTCATTGTGAT
CACGCAGGGCAAGCACTACAACAAACTGGCCATTCTACTCAACACCAAAT
CTGTCCCGGGCAAGGATACCATCTATAAGGTGCTAGTGCTGGACCATCAA
TTCAAGGCAAAGGATAGCAACAGCCTCCAGCAAGGCGAGCTCTATTACAA
AATACTTTCGCTGACGCCTAGAAACATGACCTTCCAACCAGTGGGAATCG
GAGGACACACTGTGCTGGACATCAAGGCTATAGACATTATCAGTATCACC
AAGAGCACATTGAAAGTCGATGCAGATGCGATTATCCGGAATTGGGAGCA
GCGGCAGCTGGAGCGGTTCAAGGACTCCCCGCCAAGTGGATCGGTGGTCA
AGGCGGTGACCGAGCTAAACCAGCTCAATGAGAGTTACATTGACAACCCG
GATAACATCAAATACGTTAATCTTTCCAAGGAAATAATCGTGAACGCTGA
CAGCGAGGTGGCCATGCTGAACTACGTTGATCACCTGCTCCGTAAGGTTG
GCGAATTTCTGCCACATACCAACATTGCCGGATTCGAACAGGAGTTCGCC
AAAGTGTACGAGCGCCGAATGCTGGAGATTCACATCGAGGAGCTGCGCTT
CAAGAACTCCGCGAGAAATTTGACCCTCTATCCGGACTATTGTAACAAAT
TGAAGGTGCTGCGAGCCCTGAAATACATAGATGAACTGGACGAGGTCACA
CTTAAGGGAAAAGTGGCCTGTGAGATGGGCCAAAATGAGCTACTTATCAC
GGAGCTCATACTATGCAACATGTTCAACGATCTCGAGCCGGCAGAAATAG
CCGCCTTGCTCTCCGGCCTTGTCTTCCAGGCGAAGATGCAGGATAAGCCG
GTAATACCAGAGGCGTTGAAGGAGTGCGTGGCGGCATTTGAGCAGATCAA
CGATACAATTCTTGCCGAGGAGCAGCGCTTTCAGGCAGCCATCGAGACCG
ATAATCGCCTGAACTTTGGTCTGCTGGAGGTGGTCTACGAGTGGGCTAGA
AATAAGCCCTTTGCTGAGATTATGAAACTGACGACGGTGCAGGAGGGCAT
CATTGTTCGCTGCATTCAGCAGCTGAATGAAACGCTGCGTGATGTTAAAA
CGGCCGCCATTCGGATTGGCAATCCGGGACTGCAGTCGAAGATGGAGGAG
GCGTCGGCTGCTATCAAGCGCGATATTGTTTTCACCGCATCCTTGTACAC
AGAACTGTGAAAGCTTTCTAGACCAT

BS10407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3594 CG10210-PB 1..3594 17..3610 17970 100 Plus
tst-RA 3594 CG10210-PA 1..3594 17..3610 17970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
tst-RB 3821 CG10210-RB 98..3691 17..3610 17970 100 Plus
tst-RA 4332 CG10210-RA 98..3691 17..3610 17970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23770441..23772762 2338..17 11610 100 Minus
3R 32079331 3R 23769309..23770377 3406..2338 5345 100 Minus
3R 32079331 3R 23769040..23769245 3610..3405 1030 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:06:13 has no hits.

BS10407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:06 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 1..3594 17..3610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:31 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 46..3639 17..3610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:16 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..3690 17..3609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:16 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 46..3638 17..3609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:01 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
tst-RA 98..3690 17..3609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:01 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23770441..23772762 17..2338 100   Minus
3R 23769041..23769243 3407..3609 100 <- Minus
3R 23769309..23770376 2339..3406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:16 Download gff for BS10407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19596163..19598484 17..2338 100   Minus
arm_3R 19594763..19594965 3407..3609 100 <- Minus
arm_3R 19595031..19596098 2339..3406 100 <- Minus

BS10407.pep Sequence

Translation from 16 to 3609

> BS10407.pep
MNEIRGEDNLERLRNYILRPELSLHNPLPDVLPRKFDPMRLLHAPRCPGS
TKLAPRRDQSGHILEFVELDLEAVGANANNSMSMQREPGLLEDATRGSHS
NFPFWPGGFDEQRQQIAALDVSNFQFGDKLLTVPPGFSSGYDFFQSQSVT
LPPVVADPSNVDLLENLEQDLDVQEWMKLTRSEETSSTGTPKSPKQSNVQ
LPSEEFRDVDDHIMKADLKPVLNISTTTKNFKSDWAEMVDISQPINNFKE
QIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIAL
SKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIM
TTEILRSMLYCGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHV
NIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGK
SRDDIFLLVDAQGKYLQGNYEKAVERKKEMQGKAKGGGGGPRNHLNAKQE
QYTWIGLIDFLRRSNMMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAV
QKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILPILKEIVEML
FQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQM
AGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAV
ILTCLRIESIKVEDIMKFSFKEFNLKLQLPTQQKQLRLAEDKFAMLPTLG
EHLQPLVNFYDKAVEYWKEKHRIMKFVVTQPKIQKELKAGRVIVITQGKH
YNKLAILLNTKSVPGKDTIYKVLVLDHQFKAKDSNSLQQGELYYKILSLT
PRNMTFQPVGIGGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLER
FKDSPPSGSVVKAVTELNQLNESYIDNPDNIKYVNLSKEIIVNADSEVAM
LNYVDHLLRKVGEFLPHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSAR
NLTLYPDYCNKLKVLRALKYIDELDEVTLKGKVACEMGQNELLITELILC
NMFNDLEPAEIAALLSGLVFQAKMQDKPVIPEALKECVAAFEQINDTILA
EEQRFQAAIETDNRLNFGLLEVVYEWARNKPFAEIMKLTTVQEGIIVRCI
QQLNETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL*

BS10407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
tst-PB 1197 CG10210-PB 1..1197 1..1197 6152 100 Plus
tst-PA 1197 CG10210-PA 1..1197 1..1197 6152 100 Plus
l(2)35Df-PA 1055 CG4152-PA 144..1054 255..1194 1345 35 Plus
CG5205-PA 2183 CG5205-PA 1355..1715 280..668 249 26.9 Plus
mus308-PA 2059 CG6019-PA 233..627 259..669 217 25.5 Plus