Clone Sequence Records
BS10408.3prime Sequence
928 bp (865 high quality bases) assembled on 2006-04-19
> BS10408.3prime
ATGGTCTAGAAAGCTTTTACCAGCCAGGTGGCTTCTGGTTGGGATATCCA
CCCTGCTGGTTGGCATAACTGCCTGGGTATGTTCCGTAGTGGCCGGGTGG
CGGTCCCTGCGGGAATCCCTGGTACTGATAGTTACCAGGATACGGCAAGG
TGGCGTATGGATTGAAGCTCTGCGGCATCGGAGCGGGCACATAGGCGGGG
TAGGGCACACCTGGCTGGGCTCCATATGGAATAGGCATGCCTTGCACTTG
GGCCGGATACGGAATGTTGGCCGTTGATGCGGCAGGTGGCACACTAGGTG
CGGAGCCAGGTGGAATATCGCTGCCACTGCCCGATGTGGATGCATAGTGC
GAGGGAAGGGCTGGAGTGGCCGGACATGCCTGGCGGCTGGACTCTGTGGT
CAAGTCCTTGAGCAGCTCCTCCTTCTCTGTCTTGCGGGCGAACACAAAGT
CGCTGATCTTGTTCTGGAACACAACCAGCAACTGCGTGAGGTCGTTGTAG
AACTTGGTGCCCTCCTGCAGATTTCCAGAAAGTTCAATGTAGCTATCGAA
GGCGGTTGCTAGCTCCTGGTATAAAGTATCCCGCGAGCTGCCGCAGCTAC
CAGTTTCAGAGACAAAGGCACCATGGGCGCTTTGGATCTCGCTGACCAAG
GACTGCTGACGTTCCACGCTCTCGCGCACCTGCTGCTGCAGGGGATTGAG
CACTTGGCCAATACGCGCCAACGAGAGGGCGGGCTCGTCAATAGCGCCAT
CCTTCTGCAGGGCAATCAAAAACTCGTCCTTCATGTTGAAAGTGGCACCT
TTCAGCTCGGACTCAATGGCCTCACGCTCCGCCTTAATGGTCTCCACGTC
GTCCATCAGCTTCTTAAGACGCTGCACGCTGGAGCAGTTTGGGTCCACAC
TGCCACTGGCCGAGGGCAGAGACTGTTG
BS10408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12876-PA | 2511 | CG12876-RA | 1600..2511 | 928..17 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 1731..2643 | 928..16 | 4565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27697135..27697744 | 319..928 | 3050 | 100 | Plus |
| 3R | 32079331 | 3R | 27696889..27697075 | 133..319 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 27696715..27696831 | 16..132 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:23 has no hits.
BS10408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:56 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1600..2511 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:25 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1600..2511 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:48:31 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1731..2643 | 16..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:10 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1731..2643 | 16..928 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:10 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27696889..27697074 | 133..318 | 100 | <- | Plus |
| 3R | 27696715..27696831 | 16..132 | 100 | <- | Plus |
| 3R | 27697135..27697744 | 319..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:48:31 Download gff for
BS10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23522437..23522553 | 16..132 | 100 | <- | Plus |
| arm_3R | 23522611..23522796 | 133..318 | 100 | <- | Plus |
| arm_3R | 23522857..23523466 | 319..928 | 100 | | Plus |
BS10408.5prime Sequence
919 bp (820 high quality bases) assembled on 2006-04-19
> BS10408.5prime
GAAGTTATCAGTCGACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGC
CGTCGGAGGTGGATGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACC
TACAACGGTGCGTCGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAA
CGAATTTTCGAAACAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGT
ACGAGGCTTCGCTGGAGATTGTGTACGCCTATTATGACCAGATTTGTGCG
CTGGAGACCAAGATATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAA
GGATGCCTTCGACAAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTC
ACACCTCCTTGCTTTACGAGAAGGTCTGTGTGCTCTTCAACATTGCCGCC
CTGCAGAGCAACATCGCTGCCAACCAGTCCCTGGATTCGGATGACGGCCT
TAAGCTGACCATCAAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATT
TGAAGGGAGCGACGCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTC
AGCCAGGATACGCTAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCA
GGAGGTTTTCATTCTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCA
TCGCCAAGCTTTGCTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGC
GCTATGCAAAAGGAGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACC
TACTATTGCTGGAAAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACC
AGAGTCTGGTGTGCCGTGCCGCCNAGAAGATTGGCGAGGAGATTGCTCGC
TTGCGCAACGCCATTGATCTTTTTCAGGCGGCTCAGACGCGTAGCGGAAA
TGAGACCTACTTGGATGAA
BS10408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12876-PA | 2511 | CG12876-RA | 1..903 | 17..919 | 4446 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..1034 | 17..919 | 4474 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27698441..27698731 | 919..629 | 1414 | 99 | Minus |
| 3R | 32079331 | 3R | 27699086..27699367 | 629..348 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 228..17 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 347..229 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:48:08 has no hits.
BS10408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:38:57 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:27 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12876-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:39 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1034 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:57 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1034 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:57 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27699768..27699979 | 17..228 | 100 | | Minus |
| 3R | 27698441..27698730 | 630..919 | 98 | <- | Minus |
| 3R | 27699086..27699367 | 348..629 | 100 | <- | Minus |
| 3R | 27699435..27699553 | 229..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:39 Download gff for
BS10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23524163..23524452 | 630..919 | 98 | <- | Minus |
| arm_3R | 23524808..23525089 | 348..629 | 100 | <- | Minus |
| arm_3R | 23525157..23525275 | 229..347 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 17..228 | 100 | | Minus |
BS10408.complete Sequence
2543 bp assembled on 2007-11-30
GenBank Submission: FJ636644
> BS10408.complete
GAAGTTATCAGTCGACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGC
CGTCGGAGGTGGATGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACC
TACAACGGTGCGTCGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAA
CGAATTTTCGAAACAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGT
ACGAGGCTTCGCTGGAGATTGTGTACGCCTATTATGACCAGATTTGTGCG
CTGGAGACCAAGATATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAA
GGATGCCTTCGACAAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTC
ACACCTCCTTGCTTTACGAGAAGGTCTGTGTGCTCTTCAACATTGCCGCC
CTGCAGAGCAACATCGCTGCCAACCAGTCCCTGGATTCGGATGACGGCCT
TAAGCTGACCATCAAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATT
TGAAGGGAGCGACGCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTC
AGCCAGGATACGCTAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCA
GGAGGTTTTCATTCTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCA
TCGCCAAGCTTTGCTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGC
GCTATGCAAAAGGAGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACC
TACTATTGCTGGAAAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACC
AGAGTCTGGTGTGCCGTGCCGCCAAGAAGATTGGCGAGGAGATTGCTCGC
TTGCGCAACGCCATTGATCTTTTCAAGGCGGCTCAGACGCGTAGCGGAAA
TGAGACCTACTTGGATGAATACTTCAGCCGCGCCAAGCGCAACTTGACCG
AGTCCACCAAGGACAACGAGTTCATCTACAACGAGATCATACCAGAGCTG
AGCACCTTGACCTCTCCTGGAAAAGCCCAGTTGGCCAAGCCACTGCCCAT
TGCTGTCCCCTTGGCTGAAAATTTTAAGGATATATTCAGCAGCCTAGTGC
CCGTGGAGCTTCATCGTGCTCTGACCGCCTCCGATATGCGCCGCAATGAG
ATCGTCAACGTGGAGATCATGAAGTTGCGTGAAGCCACCCAGACTCTGAA
TGCTGTTTTGGCCAGCTTGAATCTTCCAGCGGCCGTGGAGACAGCCGATG
GCAACAGTGGGCTTCCGCCGTCGCTAAAGGAAAAGGCCAATGAAGTTCGC
CAGAAGGGGGGCATTGAAAATGTGCAGACGATGCTTAAGGATCTTCCCGA
GCTTCTGAACCGCAACCGCGAGATCCTCGACGAAACCGAGCGGCTCTTGG
ACGAAGAACGCGACTCCGATAACCAGTTGCGGGCGCAGTTCAAGGATCGT
TGGACTCGCATCAGCTCCGACAAGCTAACAGAGATGTTCCGCACCAACGC
GAAAAAGTATCGCGAAGTCATCACCAATGCCATCGAAGCCGACAAGGTGG
TTCGCCAGAAGTTTGAGGCCAACCAGAAGGGCATCCAACTCTTGTCCTTG
CCACCCGATCAAATCCAACAGTCTCTGCCCTCGGCCAGTGGCAGTGTGGA
CCCAAACTGCTCCAGCGTGCAGCGTCTTAAGAAGCTGATGGACGACGTGG
AGACCATTAAGGCGGAGCGTGAGGCCATTGAGTCCGAGCTGAAAGGTGCC
ACTTTCAACATGAAGGACGAGTTTTTGATTGCCCTGCAGAAGGATGGCGC
TATTGACGAGCCCGCCCTCTCGTTGGCGCGTATTGGCCAAGTGCTCAATC
CCCTGCAGCAGCAGGTGCGCGAGAGCGTGGAACGTCAGCAGTCCTTGGTC
AGCGAGATCCAAAGCGCCCATGGTGCCTTTGTCTCTGAAACTGGTAGCTG
CGGCAGCTCGCGGGATACTTTATACCAGGAGCTAGCAACCGCCTTCGATA
GCTACATTGAACTTTCTGGAAATCTGCAGGAGGGCACCAAGTTCTACAAC
GACCTCACGCAGTTGCTGGTTGTGTTCCAGAACAAGATCAGCGACTTTGT
GTTCGCCCGCAAGACAGAGAAGGAGGAGCTGCTCAAGGACTTGACCACAG
AGTCCAGCCGCCAGGCATGTCCGGCCACTCCAGCCCTTCCCTCGCACTAT
GCATCCACATCGGGCAGTGGCAGCGATATTCCACCTGGCTCCGCACCTAG
TGTGCCACCTGCCGCATCAACGGCCAACATTCCGTATCCGGCCCAAGTGC
AAGGCATGCCTATTCCATATGGAGCCCAGCCAGGTGTGCCCTACCCCGCC
TATGTGCCCGCTCCGATGCCGCAGAGCTTCAATCCATACGCCACCTTGCC
GTATCCTGGTAACTATCAGTACCAGGGATTCCCGCAGGGACCGCCACCCG
GCCACTACGGAACATACCCAGGCAGTTATGCCAACCAGCAGGGTGGATAT
CCCAACCAGAAGCCACCTGGCTGGTAAAAGCTTTCTAGACCAT
BS10408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2511 | CG12876-PA | 1..2511 | 17..2527 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..2643 | 17..2528 | 12560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27697135..27698731 | 2225..629 | 7985 | 100 | Minus |
| 3R | 32079331 | 3R | 27699086..27699367 | 629..348 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 228..17 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27696889..27697075 | 2411..2225 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 347..229 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 27696715..27696831 | 2528..2412 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:06:49 has no hits.
BS10408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:08 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 1..2511 | 17..2527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:33 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..2778 | 17..2528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:41 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..2640 | 17..2525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:27 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..2775 | 17..2525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:38 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..2640 | 17..2525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:38 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27699768..27699979 | 17..228 | 100 | | Minus |
| 3R | 27696718..27696831 | 2412..2525 | 100 | <- | Minus |
| 3R | 27696889..27697074 | 2226..2411 | 100 | <- | Minus |
| 3R | 27697135..27698730 | 630..2225 | 100 | <- | Minus |
| 3R | 27699086..27699367 | 348..629 | 100 | <- | Minus |
| 3R | 27699435..27699553 | 229..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:41 Download gff for
BS10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23525490..23525701 | 17..228 | 100 | | Minus |
| arm_3R | 23522440..23522553 | 2412..2525 | 100 | <- | Minus |
| arm_3R | 23522611..23522796 | 2226..2411 | 100 | <- | Minus |
| arm_3R | 23522857..23524452 | 630..2225 | 100 | <- | Minus |
| arm_3R | 23524808..23525089 | 348..629 | 100 | <- | Minus |
| arm_3R | 23525157..23525275 | 229..347 | 100 | <- | Minus |
BS10408.pep Sequence
Translation from 16 to 2526
> BS10408.pep
MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQ
RNTAIWKFFEKYEASLEIVYAYYDQICALETKISVSELQIPFKWKDAFDK
GSIFGGKISLTHTSLLYEKVCVLFNIAALQSNIAANQSLDSDDGLKLTIK
LLQQSAGIFQYLKGATPAAVPSEPTPDLSQDTLTVLQALMVAQAQEVFIL
KAIKDNLKDQIIAKLCCQAEESYADVLRAMQKESVRSLWEKEWIPTIAGK
QAGFHALTQLYQSLVCRAAKKIGEEIARLRNAIDLFKAAQTRSGNETYLD
EYFSRAKRNLTESTKDNEFIYNEIIPELSTLTSPGKAQLAKPLPIAVPLA
ENFKDIFSSLVPVELHRALTASDMRRNEIVNVEIMKLREATQTLNAVLAS
LNLPAAVETADGNSGLPPSLKEKANEVRQKGGIENVQTMLKDLPELLNRN
REILDETERLLDEERDSDNQLRAQFKDRWTRISSDKLTEMFRTNAKKYRE
VITNAIEADKVVRQKFEANQKGIQLLSLPPDQIQQSLPSASGSVDPNCSS
VQRLKKLMDDVETIKAEREAIESELKGATFNMKDEFLIALQKDGAIDEPA
LSLARIGQVLNPLQQQVRESVERQQSLVSEIQSAHGAFVSETGSCGSSRD
TLYQELATAFDSYIELSGNLQEGTKFYNDLTQLLVVFQNKISDFVFARKT
EKEELLKDLTTESSRQACPATPALPSHYASTSGSGSDIPPGSAPSVPPAA
STANIPYPAQVQGMPIPYGAQPGVPYPAYVPAPMPQSFNPYATLPYPGNY
QYQGFPQGPPPGHYGTYPGSYANQQGGYPNQKPPGW*
BS10408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-PA | 836 | CG12876-PA | 1..836 | 1..836 | 4267 | 100 | Plus |
| mop-PA | 1833 | CG9311-PA | 14..808 | 9..830 | 389 | 24.4 | Plus |
| Rhp-PA | 718 | CG8497-PA | 127..392 | 9..296 | 164 | 21.5 | Plus |
| Rhp-PB | 718 | CG8497-PB | 127..392 | 9..296 | 164 | 21.5 | Plus |
