Clone Sequence Records
BS10414.3prime Sequence
940 bp (818 high quality bases) assembled on 2006-04-19
> BS10414.3prime
ATGGTCTAGAAAGCTTTTAGTGGAACTGAAGGAAGAGGGAGCGTTCGCAG
GCCTCCTCAAGCAAAGCTTGCTGCCTAACCTTCTCTTCGGGAGTGAGCTC
TTTCACCAATTCGTCGAAGCCATCGTCCGAGTAAGTAGGTTCCTCATCTA
CCATGCCCCCATCAATCTCTTCACCAGCGGCTGCTGGCAAGAGTGGTTCG
CCAATGATGCTACGTATGTCATTGGGCAACGTTTCAGAGCCCTTGAGCTG
CAGATAGATACCCTCAGCTACCTGCAAGGTTTTTTGAACATCTATGTTTC
CAGACAGTTCGTTTACATGCTTCAGGATTTCTGTGAACTCGTACTGGCTG
TCGATGATCACTCTAGTCTCTTGATCGAGGATGGCCACCGAAAACAGTAG
GTGGAAGTTGGGGCAGGGTAGCCGAGTCCACAGACATTCCCATAATTTCA
AAACGTCCTCGCTGTTTAGCTCCCGCTTATACCAAACCAAGAGCCATCTG
AAGCAGAAGTACATGTTGTCCGAGTCGTGGGATCTCATGTAGTTAAATAG
CGGGGCATTGGCAAATTCAATAAGGCGACGAATCTGGGCGAACTGCGTTT
TCATGCCCGCCTGGTCTATGTCAAAGTTGGTAAACACCAGCTCCATGAAG
CCCACAAAGCACCAGAAGGTGTCCACTTCGTTTACCTGGATCTCCAAAAT
GGGCGCAAGCAGATCGGACATACCCTGAACATAACCAAGGTCAAAGTTAT
ACATCACGTATGTCATAAGGATACCCTGGAGAAGGGTTAGATTGGGATTA
TCCTCTCCGGCAAAGAATTGCAAAGAGCGATCTGTGCGTTTCACATCCTT
TTCAATCTGGCACTTGCGCTCCCGGTAGCCACAGAAATTCGCCTCCTGGG
TCGTAGTCATAGCAAGCCACTGGGCCTTCATGTTGTAGTA
BS10414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11490-PA | 2148 | CG11490-RA | 1225..2148 | 940..17 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 1331..2254 | 940..17 | 4620 | 100 | Minus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 1558..2481 | 940..17 | 4620 | 100 | Minus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 1331..2254 | 940..17 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 208935..209858 | 940..17 | 4620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:07 has no hits.
BS10414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:09 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1226..2148 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:41 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1226..2148 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:24 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 1332..2256 | 11..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:28 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 1332..2256 | 11..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:28 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 208936..209860 | 11..939 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:24 Download gff for
BS10414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 208936..209860 | 11..939 | 99 | | Minus |
BS10414.5prime Sequence
935 bp (910 high quality bases) assembled on 2006-04-19
> BS10414.5prime
GAAGTTATCAGTCGACATGGACGAATCGGTGCGATATGACCGCTGTCACC
AGGTGCAGCTGGGCGTTTTCAACGAGTCGCAGTTGTCTTCTGTGGAGGAG
GACGTGCAGAATCTGCCTCAGCAGGGAACGGGAAACATCCTCTTCACCCA
CGACGGCGTGCTTCTGAAGAAAGCCAGTGCGGAGCACATCGCGGATCTGA
ACACCAGCGGCTCCCTTTCCTTGGTGGAATATTCGCGATCCATCGCGGAA
ATGCCCCGTAGGAGACTGTTGCTCGAGTGGCAGCCCAATGACAGTATCAT
GATTGCGGACGACAGCCAGGATCAGGGAGACTGGGCGCTGGTAGACAGGA
TTTCCGGGCGAACACGCACCACATCCGAGTGCCGTGCCTTCAACACTAGA
CCCATTGAACCGAGCGGTGGAGCGACCACCCGTTCGCGAGTCATGCGTGC
CCAACTGGAAGATTTGTCTTCTGTAGAGGTGCGCCATCGCGGACAGACGA
TCCGTTTTATGCGGAAAGGGGCTAATGGCGTCCACAGCGAGTTCTTTTTC
CAGCATGGAAACGCAGACCTATTTGTGCGCTCCATGCGCGATCAGCACCT
AATCGAGAACGCCGAGACTAGTCGCAGTGGCGGCGAGGTGTATGCCATAT
TGACCACCGAGAACCAAAAATTGAAAAAGACGTTTGCTGAACTTGACATT
GGCCAGATTAAGGCAAGCCAATTGCCACGTGAGAGCTGGCTGCCCAACAA
GCTGGCCGGAATCCTGNGCAACATTCCCGATTACGTACAGCCTCCGTTCC
AGCGTTCGCCCAAATCTAGGCCGGGAGTCTTGATCTCTGGCGATCGGCAG
ACTTCACCGGACATTATCAAATATTGGGCTAAGTGGCAGCACAATAGTGC
CTGTTCCTCAACGGACAGTCTCGTGGGGGCAGTGC
BS10414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11490-PA | 2148 | CG11490-RA | 1..847 | 17..863 | 4216 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 106..1029 | 16..935 | 4509 | 99.5 | Plus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 333..1256 | 16..935 | 4509 | 99.5 | Plus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 106..1029 | 16..935 | 4509 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 207707..208513 | 133..935 | 3809 | 99.3 | Plus |
| 2L | 23513712 | 2L | 207511..207631 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:32:15 has no hits.
BS10414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:10 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1..923 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:42 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-PA | 1..923 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:27 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 102..1029 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:03 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 102..1029 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:03 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 207507..207631 | 9..136 | 97 | -> | Plus |
| 2L | 207711..208513 | 137..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:27 Download gff for
BS10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 207507..207631 | 9..136 | 97 | -> | Plus |
| arm_2L | 207711..208513 | 137..935 | 99 | | Plus |
BS10414.complete Sequence
2180 bp assembled on 2007-11-30
GenBank Submission: FJ636645
> BS10414.complete
GAAGTTATCAGTCGACATGGACGAATCGGTGCGATATGACCGCTGTCACC
AGGTGCAGCTGGGCGTTTTCAACGAGTCGCAGTTGTCTTCTGTGGAGGAG
GACGTGCAGAATCTGCCTCAGCAGGGAACGGGAAACATCCTCTTCACCCA
CGACGGCGTGCTTCTGAAGAAAGCCAGTGCGGAGCACATCGCGGATCTGA
ACACCAGCGGCTCCCTTTCCTTGGTGGAATATTCGCGATCCATCGCGGAA
ATGCCCCGTAGGAGACTGTTGCTCGAGTGGCAGCCCAATGACAGTATCAT
GATTGCGGACGACAGCCAGGATCAGGGAGACTGGGCGCTGGTAGACAGGA
TTTCCGGGCGAACACGCACCACATCCGAGTGCCGTGCCTTCAACACTAGA
CCCATTGAACCGAGCGGTGGAGCGACCACCCGTTCGCGAGTCATGCGTGC
CCAACTGGAAGATTTGTCTTCTGTAGAGGTGCGCCATCGCGGACAGACGA
TCCGTTTTATGCGGAAAGGGGCTAATGGCGTCCACAGCGAGTTCTTTTTC
CAGCATGGAAACGCAGACCTATTTGTGCGCTCCATGCGCGATCAGCACCT
AATCGAGAACGCCGAGACTAGTCGCAGTGGCGGCGAGGTGTATGCCATAT
TGACCACCGAGAACCAAAAATTGAAAAAGACGTTTGCTGAACTTGACATT
GGCCAGATTAAGGCAAGCCAATTGCCACGTGAGAGCTGGCTGCCCAACAA
GCTGGCCGGAATCCTGGGCAACATTCCCGATTACGTACAGCCTCCGTTCC
AGCGTTCGCCCAAATCTAGGCCGGGAGTCTTGATCTCTGGCGATCGGCAG
ACTTCACCGGACAATTATCAAATAATTGGGCTAAGTGGCAGCACCAATAG
TGCCTGTTCCTCAAACGGACAGTCTCGTGGGGGCAGTGCAGAGAAGTCTC
CCGCCGACAGCGAGCTGGAAACTCTTAATGCCCAGGACGAAAAAATAGTT
AACAACTTGCCCGATCGCCAGCGGGTGGAGAGAGGTCATCCCCTAACCGA
GACGCAGTGGCTAGAGTTTCAGACGCCCGACGGCCGAATTTCCGATAGCG
CCCGAATCAAGGAGCTCATCTTCCGCGGCGGCGTCGTGCAGAGCCTGCGG
CCAGAGGTTTGGAAGTTCCTTCTCAATTACTACCTTTGGTCGGATACTCA
TGTGGAGCGGATCGAGCGTCGTAAGCAAAAGTCTATTGAGTACTACAACA
TGAAGGCCCAGTGGCTTGCTATGACTACGACCCAGGAGGCGAATTTCTGT
GGCTACCGGGAGCGCAAGTGCCAGATTGAAAAGGATGTGAAACGCACAGA
TCGCTCTTTGCAATTCTTTGCCGGAGAGGATAATCCCAATCTAACCCTTC
TCCAGGGTATCCTTATGACATACGTGATGTATAACTTTGACCTTGGTTAT
GTTCAGGGTATGTCCGATCTGCTTGCGCCCATTTTGGAGATCCAGGTAAA
CGAAGTGGACACCTTCTGGTGCTTTGTGGGCTTCATGGAGCTGGTGTTTA
CCAACTTTGACATAGACCAGGCGGGCATGAAAACGCAGTTCGCCCAGATT
CGTCGCCTTATTGAATTTGCCAATGCCCCGCTATTTAACTACATGAGATC
CCACGACTCGGACAACATGTACTTCTGCTTCAGATGGCTCTTGGTTTGGT
ATAAGCGGGAGCTAAACAGCGAGGACGTTTTGAAATTATGGGAATGTCTG
TGGACTCGGCTACCCTGCCCCAACTTCCACCTACTGTTTTCGGTGGCCAT
CCTCGATCAAGAGACTAGAGTGATCATCGACAGCCAGTACGAGTTCACAG
AAATCCTGAAGCATGTAAACGAACTGTCTGGAAACATAGATGTTCAAAAA
ACCTTGCAGGTAGCTGAGGGTATCTATCTGCAGCTCAAGGGCTCTGAAAC
GTTGCCCAATGACATACGTAGCATCATTGGCGAACCACTCTTGCCAGCAG
CCGCTGGTGAAGAGATTGATGGGGGCATGGTAGATGAGGAACCTACTTAC
TCGGACGATGGCTTCGACGAATTGGTGAAAGAGCTCACTCCCGAAGAGAA
GGTTAGGCAGCAAGCTTTGCTTGAGGAGGCCTGCGAACGCTCCCTCTTCC
TTCAGTTCCACTAAAAGCTTTCTAGACCAT
BS10414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 2148 | CG11490-PC | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| Tbc1d15-17-RB | 2148 | CG11490-PB | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| Tbc1d15-17-RA | 2148 | CG11490-PA | 1..2148 | 17..2164 | 10740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-RC | 3121 | CG11490-RC | 106..2254 | 16..2164 | 10745 | 100 | Plus |
| Tbc1d15-17-RB | 3129 | CG11490-RB | 333..2481 | 16..2164 | 10745 | 100 | Plus |
| Tbc1d15-17-RA | 2902 | CG11490-RA | 106..2254 | 16..2164 | 10745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 208727..209858 | 1033..2164 | 5660 | 100 | Plus |
| 2L | 23513712 | 2L | 207707..208610 | 133..1036 | 4505 | 99.9 | Plus |
| 2L | 23513712 | 2L | 207511..207631 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:10 has no hits.
BS10414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:09 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 1..2148 | 17..2164 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:34 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 109..2263 | 9..2170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:28 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 107..2252 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:50 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11490-RA | 114..2259 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:29 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbc1d15-17-RA | 107..2252 | 17..2162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:29 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 207512..207631 | 17..136 | 100 | -> | Plus |
| 2L | 207711..208608 | 137..1034 | 100 | -> | Plus |
| 2L | 208729..209856 | 1035..2162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:28 Download gff for
BS10414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 207512..207631 | 17..136 | 100 | -> | Plus |
| arm_2L | 207711..208608 | 137..1034 | 100 | -> | Plus |
| arm_2L | 208729..209856 | 1035..2162 | 100 | | Plus |
BS10414.pep Sequence
Translation from 16 to 2163
> BS10414.pep
MDESVRYDRCHQVQLGVFNESQLSSVEEDVQNLPQQGTGNILFTHDGVLL
KKASAEHIADLNTSGSLSLVEYSRSIAEMPRRRLLLEWQPNDSIMIADDS
QDQGDWALVDRISGRTRTTSECRAFNTRPIEPSGGATTRSRVMRAQLEDL
SSVEVRHRGQTIRFMRKGANGVHSEFFFQHGNADLFVRSMRDQHLIENAE
TSRSGGEVYAILTTENQKLKKTFAELDIGQIKASQLPRESWLPNKLAGIL
GNIPDYVQPPFQRSPKSRPGVLISGDRQTSPDNYQIIGLSGSTNSACSSN
GQSRGGSAEKSPADSELETLNAQDEKIVNNLPDRQRVERGHPLTETQWLE
FQTPDGRISDSARIKELIFRGGVVQSLRPEVWKFLLNYYLWSDTHVERIE
RRKQKSIEYYNMKAQWLAMTTTQEANFCGYRERKCQIEKDVKRTDRSLQF
FAGEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPILEIQVNEVDTF
WCFVGFMELVFTNFDIDQAGMKTQFAQIRRLIEFANAPLFNYMRSHDSDN
MYFCFRWLLVWYKRELNSEDVLKLWECLWTRLPCPNFHLLFSVAILDQET
RVIIDSQYEFTEILKHVNELSGNIDVQKTLQVAEGIYLQLKGSETLPNDI
RSIIGEPLLPAAAGEEIDGGMVDEEPTYSDDGFDELVKELTPEEKVRQQA
LLEEACERSLFLQFH*
BS10414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbc1d15-17-PC | 715 | CG11490-PC | 1..715 | 1..715 | 3732 | 100 | Plus |
| Tbc1d15-17-PB | 715 | CG11490-PB | 1..715 | 1..715 | 3732 | 100 | Plus |
| Tbc1d15-17-PA | 715 | CG11490-PA | 1..715 | 1..715 | 3732 | 100 | Plus |
| CG5337-PA | 702 | CG5337-PA | 372..663 | 356..647 | 454 | 34.8 | Plus |
| CG8155-PA | 1098 | CG8155-PA | 185..441 | 325..582 | 361 | 33.5 | Plus |
