Clone Sequence Records
BS10415.3prime Sequence
896 bp (849 high quality bases) assembled on 2006-04-19
> BS10415.3prime
ATGGTCTAGAAAGCTTCTACATCTTATAGGTGGCGGGCACGGATCGGGGA
TAGTCCAGATCGTACATCTGGGCCTTGATGAACGCCAGCTTATTGACCGG
CTCTGGACGAACAGTGGCCAATCCGTTTTTGTAGGCGTACTCCACAATCC
TTTCGGCAATGGCCATCGAACAGCTGACAATGGAGCTGAGTGGTGGATAC
AAGCTGCCCTTGGCCAGGTCGTCCTTGGAGACCAGCTCCGCCAAGCGCTC
GGCGGCGACCAAGAATACCTGCTCGGGAATGTTCAGCATGCCGGCACACA
GAACACCCAGTGCCACGCCAGGGAAAATGTACGAGTTGTTGCCCTGACCC
GGATAGAACTTCTTGTTGTTGTACGTCACAGGAGCAAAAGGCGAACCGCT
GGCGAAGATGCAGCGCCCCTTGGTGTACGTATACGCCTCCTCGGCGGTGC
ACTCCGCCTTGCTGGTCGGATTGGACAGTGCAAAGATGATCGGCGTCTCA
TTAATATCGGCCATCAGCTCAAGGATCTCCTGGTTGAAGGCGCCGCCCTG
CGCAGCCGCTCCAATCAGGACATTGGGACGCACCTTTCGCACCGCCTCTG
CCAAAGTATCGATGGGTTCGTGCAGCTGGGCAAAGTGCAGCTTGTGTTCG
GTGAGTCCGCCCTTTGGACGATCGCGGGTGATGACACCACGGCTATCCAC
CATCCAGATGCGGGCCTTGGCCTCCTCCTCGGTGAGACCCTCCACCTTCA
TGGCCATCAGGCACAGGTTGGCAATACCAAGAGCCGCTTCTCCGGCGCCC
AGGAACAACAGCGTGTTATCCTTCAGCTGGGTCTTCTTGATCTTTAGCGA
GGCCAGCAGACCAGCCACGGCCACCGACGCGGTTCTTGAATATCGT
BS10415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10120-PB | 2292 | Men-RB | 1424..2292 | 885..17 | 4345 | 100 | Minus |
| CG10120-PA | 2280 | Men-RA | 1412..2280 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-RC | 2364 | CG10120-RC | 1115..1996 | 896..16 | 4385 | 99.9 | Minus |
| Men-RA | 2767 | CG10120-RA | 1518..2399 | 896..16 | 4385 | 99.9 | Minus |
| Men-RB | 2906 | CG10120-RB | 1657..2538 | 896..16 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12713471..12714150 | 16..695 | 3400 | 100 | Plus |
| 3R | 32079331 | 3R | 12714204..12714408 | 693..896 | 975 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:21:15 has no hits.
BS10415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:11 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-PA | 1400..2280 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:43 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10120-PA | 1400..2280 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:28:10 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 1657..2538 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:07 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 1657..2538 | 16..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:07 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12713471..12714147 | 16..692 | 100 | <- | Plus |
| 3R | 12714204..12714408 | 693..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:28:10 Download gff for
BS10415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8539193..8539869 | 16..692 | 100 | <- | Plus |
| arm_3R | 8539926..8540130 | 693..896 | 99 | | Plus |
BS10415.5prime Sequence
861 bp (697 high quality bases) assembled on 2006-04-19
> BS10415.5prime
GAAGTTATCAGTCGACATGGGTAATTCCAGTTCCATTTGCGCCGATCGCA
ATGTCATAACAAATTTCGATGAAAATGGCACGCCGGTTTATCCCACCGCC
AACAATTCGCAGAGTCCTTCCTCATATAGTCGCGGCAAAGAGCGCGAGCT
CGGCTGTTACACGAAGAGAAACAGCAACAGCAACAACAACAATAGCCATG
AGAGAGAGAGTCAGAGCTGTTGTAGTAGTCGTGTGTGTAAAAATCATACG
ACCACAACGACAACCACACTCGAATACGAACTTTCCAATTTCGCAAAACT
AACGACACGAATCACAACGCAAAGTGCCGCCGAAGTGGACACATCGCCGC
ATACGGATACGGAAACGCATAGGGACAGAGATTCGAATCCGGGTAATATA
GCCTTAGCCACCGATTTGGAACTGCCCAAGGGTCTGCCGTTATCGTTATC
CTCGCGACACCACTGGAATCAGCTGCAGAGCAGTTTGCACGCCCTTCACC
ACCAGCAACAGCAACAACAACAGCAACTACGTTCATACAGCTCCACTAGC
GAAACAAATTTGGAAGACAAGATGAGCAAACCCGATTCGAAACTAGATAA
ATACGCGCAGCGCGATCGCCTGGGCCTTTGGGGCACTGGTGACAATGAGG
TGGTCGGCAGCCTCTCCGGATTCACCCGACTCTTGGACAAGCGCTACTCA
AAGGGCCTGGCCTTCACACACGAGGAGCGCCAGCAGTTGGGCATCCATGG
CATGCTGCCCTATGTGGTCCGTGAGCCCAGTGAGCAGGTGGAGCACTGCC
GCGCTCTGCTGGCGCGACTGGATCAGGATCTGGACAAGTACATGTACCTG
ATCAGCCTATC
BS10415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10120-PB | 2292 | Men-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG10120-PA | 2280 | Men-RA | 51..833 | 79..861 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-RB | 2906 | CG10120-RB | 246..1090 | 17..861 | 4225 | 100 | Plus |
| Men-RA | 2767 | CG10120-RA | 169..951 | 79..861 | 3915 | 100 | Plus |
| Men-RC | 2364 | CG10120-RC | 1..548 | 314..861 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12719402..12720028 | 704..78 | 3135 | 100 | Minus |
| 3R | 32079331 | 3R | 12714975..12715134 | 861..702 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 12722136..12722197 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2455 | 454..578 | 176 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2352 | 487..527 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6816 | 497..578 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2476 | 128..191 | 131 | 67.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3322 | 148..194 | 127 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1159 | 455..532 | 127 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6809 | 455..530 | 126 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6788 | 497..530 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6886 | 497..579 | 125 | 63.9 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4379..4444 | 214..148 | 125 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2658 | 465..527 | 124 | 69.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 524..577 | 493..545 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2352 | 160..196 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2432 | 454..526 | 121 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6829 | 455..529 | 121 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1551..1633 | 497..576 | 120 | 62.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1036 | 497..553 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2420 | 159..198 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1160 | 128..196 | 119 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1178 | 497..572 | 118 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2401 | 167..191 | 116 | 96 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6905 | 468..530 | 116 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6787 | 124..198 | 115 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6808 | 160..198 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2557 | 497..604 | 114 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6766 | 160..198 | 114 | 76.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7982 | 500..527 | 113 | 89.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9426 | 500..527 | 113 | 89.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1088 | 493..527 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1578 | 497..527 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6854 | 468..527 | 110 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1581 | 150..196 | 109 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2961..2989 | 497..525 | 109 | 86.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2965..3020 | 170..225 | 109 | 66.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7982 | 496..524 | 109 | 86.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9398..9426 | 496..524 | 109 | 86.2 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 5975..6003 | 423..395 | 109 | 86.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2431 | 159..194 | 108 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2799..2869 | 497..572 | 108 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6847 | 160..204 | 108 | 71.1 | Plus |
BS10415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:12 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:45 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10120-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:24 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..1090 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:28 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..1090 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:28 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12714975..12715132 | 704..861 | 100 | <- | Minus |
| 3R | 12719403..12720027 | 79..703 | 100 | <- | Minus |
| 3R | 12722136..12722197 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:24 Download gff for
BS10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8540697..8540854 | 704..861 | 100 | <- | Minus |
| arm_3R | 8545125..8545749 | 79..703 | 100 | <- | Minus |
| arm_3R | 8547858..8547919 | 17..78 | 100 | | Minus |
BS10415.complete Sequence
2324 bp assembled on 2007-11-30
GenBank Submission: FJ636646
> BS10415.complete
GAAGTTATCAGTCGACATGGGTAATTCCAGTTCCATTTGCGCCGATCGCA
ATGTCATAACAAATTTCGATGAAAATGGCACGCCGGTTTATCCCACCGCC
AACAATTCGCAGAGTCCTTCCTCATATAGTCGCGGCAAAGAGCGCGAGCT
CGGCTGTTACACGAAGAGAAACAGCAACAGCAACAACAACAATAGCCATG
AGAGAGAGAGTCAGAGCTGTTGTAGTAGTCGTGTGTGTAAAAATCATACG
ACCACAACGACAACCACACTCGAATACGAACTTTCCAATTTCGCAAAACT
AACGACACGAATCACAACGCAAAGTGCCGCCGAAGTGGACACATCGCCGC
ATACGGATACGGAAACGCATAGGGACAGAGATTCGAATCCGGGTAATATA
GCCTTAGCCACCGATTTGGAACTGCCCAAGGGTCTGCCGTTATCGTTATC
CTCGCGACACCACTGGAATCAGCTGCAGAGCAGTTTGCACGCCCTTCACC
ACCAGCAACAGCAACAACAACAGCAACTACGTTCATACAGCTCCACTAGC
GAAACAAATTTGGAAGACAAGATGAGCAAACCCGATTCGAAACTAGATAA
ATACGCGCAGCGCGATCGCCTGGGCCTTTGGGGCACTGGTGACAATGAGG
TGGTCGGCAGCCTCTCCGGATTCACCCGACTCTTGGACAAGCGCTACTCA
AAGGGCCTGGCCTTCACACACGAGGAGCGCCAGCAGTTGGGCATCCATGG
CATGCTGCCCTATGTGGTCCGTGAGCCCAGTGAGCAGGTGGAGCACTGCC
GCGCTCTGCTGGCGCGACTGGATCAGGATCTGGACAAGTACATGTACCTG
ATCAGCCTATCGGAGCGGAACGAGCGTCTGTTCTACAACGTGCTCAGCTC
AGACATCGCCTACATGATGCCACTGGTGTACACGCCCACCGTGGGATTGG
CCTGCCAGCGCTACAGTTTGATCCACCAGAACGCCAAGGGCATGTTCATA
TCCATCAAGGACAAGGGACACATCTACGACGTGCTAAAGAACTGGCCGGA
AACGGATGTGCGTGCCATCGTTGTCACGGACGGCGAGCGCATCCTGGGAC
TGGGAGATCTGGGCGCCAACGGAATGGGTATACCCGTGGGCAAACTGTCC
CTGTATACGGCCTTGGCGGGCATTAAGCCATCGCAGTGCCTGCCCATCAC
CTTGGATGTGGGCACCAATACCGAATCCATCCTGGAGGATCCCCTGTACA
TCGGTCTGCGCGAACGCAGGGCCACTGGAGATCTGTACGATGAGTTCATC
GATGAGTTCATGCATGCCTGCGTTCGTCGCTTTGGTCAAAACTGCCTAAT
CCAGTTCGAGGACTTTGCCAACGCCAATGCCTTCAGGCTGTTGTCCAAAT
ACCGCGACTCCTTCTGCACCTTCAACGACGATATTCAAGGAACCGCGTCG
GTGGCCGTGGCTGGTCTGCTGGCCTCGCTAAAGATCAAGAAGACCCAGCT
GAAGGATAACACGCTGTTGTTCCTGGGCGCCGGAGAAGCGGCTCTTGGTA
TTGCCAACCTGTGCCTGATGGCCATGAAGGTGGAGGGTCTCACCGAGGAG
GAGGCCAAGGCCCGCATCTGGATGGTGGATAGCCGTGGTGTCATCACCCG
CGATCGTCCAAAGGGCGGACTCACCGAACACAAGCTGCACTTTGCCCAGC
TGCACGAACCCATCGATACTTTGGCAGAGGCGGTGCGAAAGGTGCGTCCC
AATGTCCTGATTGGAGCGGCTGCGCAGGGCGGCGCCTTCAACCAGGAGAT
CCTTGAGCTGATGGCCGATATTAATGAGACGCCGATCATCTTTGCACTGT
CCAATCCGACCAGCAAGGCGGAGTGCACCGCCGAGGAGGCGTATACGTAC
ACCAAGGGGCGCTGCATCTTCGCCAGCGGTTCGCCTTTTGCTCCTGTGAC
GTACAACAACAAGAAGTTCTATCCGGGTCAGGGCAACAACTCGTACATTT
TCCCTGGCGTGGCACTGGGTGTTCTGTGTGCCGGCATGCTGAACATTCCC
GAGCAGGTATTCTTGGTCGCCGCCGAGCGCTTGGCGGAGCTGGTCTCCAA
GGACGACCTGGCCAAGGGCAGCTTGTATCCACCACTCAGCTCCATTGTCA
GCTGTTCGATGGCCATTGCCGAAAGGATTGTGGAGTACGCCTACAAAAAC
GGATTGGCCACTGTTCGTCCAGAGCCGGTCAATAAGCTGGCGTTCATCAA
GGCCCAGATGTACGATCTGGACTATCCCCGATCCGTGCCCGCCACCTATA
AGATGTAGAAGCTTTCTAGACCAT
BS10415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-RB | 2292 | CG10120-PB | 1..2292 | 17..2308 | 11460 | 100 | Plus |
| Men-RA | 2280 | CG10120-PA | 51..2280 | 79..2308 | 11150 | 100 | Plus |
| Men-RC | 1737 | CG10120-PC | 1..1737 | 572..2308 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-RB | 2906 | CG10120-RB | 246..2538 | 17..2309 | 11465 | 100 | Plus |
| Men-RA | 2767 | CG10120-RA | 169..2399 | 79..2309 | 11155 | 100 | Plus |
| Men-RC | 2364 | CG10120-RC | 1..1996 | 314..2309 | 9980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12714204..12715134 | 1632..702 | 4655 | 100 | Minus |
| 3R | 32079331 | 3R | 12713471..12714150 | 2309..1630 | 3400 | 100 | Minus |
| 3R | 32079331 | 3R | 12719402..12720028 | 704..78 | 3135 | 100 | Minus |
| 3R | 32079331 | 3R | 27154667..27155216 | 915..1464 | 650 | 74.5 | Plus |
| 3R | 32079331 | 3R | 12722136..12722197 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2455 | 454..578 | 176 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2352 | 487..527 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6816 | 497..578 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2476 | 128..191 | 131 | 67.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3322 | 148..194 | 127 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1159 | 455..532 | 127 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6809 | 455..530 | 126 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6788 | 497..530 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6886 | 497..579 | 125 | 63.9 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4379..4444 | 214..148 | 125 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2658 | 465..527 | 124 | 69.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 524..577 | 493..545 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2352 | 160..196 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2432 | 454..526 | 121 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6829 | 455..529 | 121 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1551..1633 | 497..576 | 120 | 62.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1036 | 497..553 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2420 | 159..198 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1160 | 128..196 | 119 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1178 | 497..572 | 118 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2401 | 167..191 | 116 | 96 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6905 | 468..530 | 116 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6787 | 124..198 | 115 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6766 | 160..198 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6808 | 160..198 | 114 | 76.9 | Plus |
BS10415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:11 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 1..2292 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:36 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 349..2641 | 17..2309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:25 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..2537 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:13 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 349..2640 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:37 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..2537 | 17..2308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:37 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12713472..12714147 | 1633..2308 | 100 | <- | Minus |
| 3R | 12714204..12715132 | 704..1632 | 100 | <- | Minus |
| 3R | 12719403..12720027 | 79..703 | 100 | <- | Minus |
| 3R | 12722136..12722197 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:25 Download gff for
BS10415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8539194..8539869 | 1633..2308 | 100 | <- | Minus |
| arm_3R | 8539926..8540854 | 704..1632 | 100 | <- | Minus |
| arm_3R | 8545125..8545749 | 79..703 | 100 | <- | Minus |
| arm_3R | 8547858..8547919 | 17..78 | 100 | | Minus |
BS10415.pep Sequence
Translation from 16 to 2307
> BS10415.pep
MGNSSSICADRNVITNFDENGTPVYPTANNSQSPSSYSRGKERELGCYTK
RNSNSNNNNSHERESQSCCSSRVCKNHTTTTTTTLEYELSNFAKLTTRIT
TQSAAEVDTSPHTDTETHRDRDSNPGNIALATDLELPKGLPLSLSSRHHW
NQLQSSLHALHHQQQQQQQQLRSYSSTSETNLEDKMSKPDSKLDKYAQRD
RLGLWGTGDNEVVGSLSGFTRLLDKRYSKGLAFTHEERQQLGIHGMLPYV
VREPSEQVEHCRALLARLDQDLDKYMYLISLSERNERLFYNVLSSDIAYM
MPLVYTPTVGLACQRYSLIHQNAKGMFISIKDKGHIYDVLKNWPETDVRA
IVVTDGERILGLGDLGANGMGIPVGKLSLYTALAGIKPSQCLPITLDVGT
NTESILEDPLYIGLRERRATGDLYDEFIDEFMHACVRRFGQNCLIQFEDF
ANANAFRLLSKYRDSFCTFNDDIQGTASVAVAGLLASLKIKKTQLKDNTL
LFLGAGEAALGIANLCLMAMKVEGLTEEEAKARIWMVDSRGVITRDRPKG
GLTEHKLHFAQLHEPIDTLAEAVRKVRPNVLIGAAAQGGAFNQEILELMA
DINETPIIFALSNPTSKAECTAEEAYTYTKGRCIFASGSPFAPVTYNNKK
FYPGQGNNSYIFPGVALGVLCAGMLNIPEQVFLVAAERLAELVSKDDLAK
GSLYPPLSSIVSCSMAIAERIVEYAYKNGLATVRPEPVNKLAFIKAQMYD
LDYPRSVPATYKM*
BS10415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-PB | 763 | CG10120-PB | 1..763 | 1..763 | 3959 | 100 | Plus |
| Men-PA | 759 | CG10120-PA | 18..759 | 22..763 | 3848 | 100 | Plus |
| Men-PC | 578 | CG10120-PC | 1..578 | 186..763 | 2982 | 100 | Plus |
| Men-b-PA | 617 | CG5889-PA | 39..596 | 210..761 | 1693 | 58.8 | Plus |
| Men-b-PB | 621 | CG5889-PB | 39..596 | 210..761 | 1693 | 58.8 | Plus |
