Clone BS10417 Report

Search the DGRC for BS10417

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG4849-RA
Protein status:BS10417.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10417.3prime Sequence

975 bp (731 high quality bases) assembled on 2006-04-19

> BS10417.3prime
ATGGTCTAGAAAGCTTCTAAAGCGGGTAGTTGATCAGCACATCCTGGCGT
GCCAACTCCAGCAACATAGGATCGTCGAAGAATTTGTTGATGGACACGTC
CTCGGACAGACCCTTCCTGCGACGCGTCTTGATCATAAACTCTCTGGCCA
AATGGGATGCTTGCTGCGGCTCCAGTGGCCGGATTATGATGCTCTTGTCC
AGGGGATCGCCAGGCACTATCTGCCAGTGATGGAACACCGAAAGGCAGAA
GGCCTGGCCCTGGGTGTGCGTGCGGAGATCCGTCTCAAATCCAAATGAAT
CAATGGCGGGTATGAAGGCTTTGATCGTATATATGGGAGAACCCGATACG
GGAGCATCCTGCGTTACGTGGCCTCTGCGCCTGGCCAGCACAGTATAGAC
AGCGGATACACAATCTGCCGGCGCCTGAACCTCCACAAATAGATATGGTT
CCATTAAACGTGGGGTGGCCATCAAAAACGCCGAGTATGCCACACGACGG
GCTGTTGGAATGATCTGTCCACCGCCTCGATGCAACGCCTCGTTGGCGAT
GACGCCATCGAGAATCTTAAACTTGACATTACGGATTGGCTCCTCGCACA
GCGGCCCTTCTCGCGTTCCCCATTGGAAGCCCTGCACAATCGAATCCTTA
ACCGCGGTCAGCAGGTTCTTGTCCACTTCCGAGGGCAGGGTGTCGTCGAC
CAGGATATTTGGACCCGTGGAGTCGGGACCGAAGGCCCAAATGGAACGCG
CCGCAAGCAGATCCCAATCGTAGTTGACTTGGAAGAACTCGCCGATGCGC
TTTTTGTTCCAGTTTATGCAGACGGTTCCGTTCTCAATGTCCTCGGCCAG
TCCCTTCTCCAGTGGCTCCGAGATCATGGTTATTTTGTTTTTCTTATTCG
GCGTTTCGGCGAAACATTTCAGGGAACTCGTTTCACAACTGTTTCGCAAA
AAGCACGACGGGGATCCGCACTTTG

BS10417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 2928 CG4849-RA 2011..2928 934..17 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 2115..3076 975..16 4715 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27965907..27966487 954..375 2855 99.8 Minus
3R 32079331 3R 27966549..27966911 378..16 1815 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:01:48 has no hits.

BS10417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:16 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1968..2928 17..975 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:50 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1968..2928 17..975 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:54 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 2115..3079 11..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:36 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 2115..3079 11..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:36 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27965885..27966487 375..975 99 -> Minus
3R 27966553..27966914 11..374 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:54 Download gff for BS10417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23791607..23792209 375..975 99 -> Minus
arm_3R 23792275..23792636 11..374 99   Minus

BS10417.5prime Sequence

973 bp (830 high quality bases) assembled on 2006-04-19

> BS10417.5prime
GAAGTTATCAGTCGACATGGATTCCGATTTGTACGATGAGTTTGGCAACT
ATATTGGCCCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATTTAT
GGGCAACCCGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGACGA
GGTGGAGCCACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTTTGC
ACGAGGACAAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCGGAT
GTGGAGACCATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCCGCT
TATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACATGC
AGGAGACCACCTACGACATGGAGTTCATGGCCGATCTCATGGACACTCCG
CCGCTTATTCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAAGAC
CACCTTTGTCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGACCA
TGGAGGAGCGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAGGAA
CGCGGCTGCAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGATGT
CAAACAGAAGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATGTCA
ACTTCTCGGACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTCGTG
CTGTTCATCGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACTGCT
CAAGCACGCGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACAAGA
TTGATCGCCTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTACTTT
AAGTTGAACACATTGTGGAGGAATCAATGGGCTGCTGAGCACTATGGCGC
TCAGATGACATCTCTTAGTTTCGCTATTTGGGGCACGTGTGCTTCGCAGC
TCGTTGTACGGATTTTGTTCACT

BS10417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 2928 CG4849-RA 1..842 17..858 4210 100 Plus
CG31054-PA 375 CG31054-RA 1..326 17..342 1630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 147..1108 16..969 4595 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27963860..27964530 129..799 3355 100 Plus
3R 32079331 3R 27961214..27961427 129..342 1070 100 Plus
3R 32079331 3R 27961041..27961156 16..131 580 100 Plus
3R 32079331 3R 27963687..27963802 16..131 580 100 Plus
3R 32079331 3R 27964587..27964680 798..889 370 97.9 Plus
Blast to na_te.dros performed on 2015-02-11 14:52:34 has no hits.

BS10417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:17 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1..966 17..973 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:52 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-PA 1..966 17..973 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:06 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 147..1113 16..973 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:16 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 147..1113 16..973 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:16 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27963687..27963801 16..130 100 -> Plus
3R 27963862..27964530 131..799 100 -> Plus
3R 27964589..27964680 800..889 97 -> Plus
3R 27964740..27964830 890..973 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:06 Download gff for BS10417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23789409..23789523 16..130 100 -> Plus
arm_3R 23789584..23790252 131..799 100 -> Plus
arm_3R 23790311..23790402 800..889 97 -> Plus
arm_3R 23790462..23790552 890..973 91   Plus

BS10417.complete Sequence

2960 bp assembled on 2007-11-30

GenBank Submission: FJ636647

> BS10417.complete
GAAGTTATCAGTCGACATGGATTCCGATTTGTACGATGAGTTTGGCAACT
ATATTGGCCCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATTTAT
GGGCAACCCGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGACGA
GGTGGAGCCACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTTTGC
ACGAGGACAAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCGGAT
GTGGAGACCATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCCGCT
TATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACATGC
AGGAGACCACCTACGACATGGAGTTCATGGCCGATCTCATGGACACTCCG
CCGCTTATTCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAAGAC
CACCTTTGTCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGACCA
TGGAGGAGCGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAGGAA
CGCGGCTGCAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGATGT
CAAACAGAAGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATGTCA
ACTTCTCGGACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTCGTG
CTGTTCATCGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACTGCT
CAAGCACGCGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACAAGA
TTGATCGCCTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTACTTT
AAGTTGAAACACATTGTGGAGGAAGTCAATGGGCTGCTGAGCACCTATGG
CGCTCCAGATGACAATCTCTTAGTTTCGCCTATTTTGGGCAACGTGTGCT
TCGCCAGCTCGTTGTACGGATTTTGTTTCACTCTGAAATCCTTTGCCAAG
CTGTATGCAGACACCTATGAGGGAGTGGCTTACCTGGACTTTGCCAAGCG
GCTCTGGGGTGACATGTACTTCAACAGTAAAACGCGCAAGTTCTCGAAGA
AGCAGCCGCACAATTCGGCACAGCGCAGCTTTGTGGAGTTCATTTTGGAG
CCCATGTACAAGCTGATAGCCCAGGTGGTTGGCGATGTGGACACCACTTT
GTCGGACACTCTGGCCGAGCTGAATGTGCGCGTCTCCAAGGAGGAGATGA
AGTCCAATATAAGACCACTGCTGCGTCTCGTCTGTAACCGCTTCATGGGC
GACTGCAGCGGTTTTGTGGATATGTGCGTGGAGCACATTAAATCCCCTTT
GGAAAATGCCAAGCGAAAGGTGGACCATATATACACTGGACCCAAAGAGG
GTGACATTTACCGGGATATGATATCATGCAACCAATACGGCACTCTGATG
GTGCACAGTTCCAAGATGTATCCCAACGACGACTGTACCTTCTTCCAAGT
GCTGGCGAGGATTGTCTCTGGTACTCTACACGCTGGCCAGGAGGTGCGTG
TCCTGGGAGAGAACTACACCTTGCAGGATGAGGAGGACTCTCGCATTCTG
CAAGTCGGTCGTCTGTGGGTATTTGAGTCTCGTTACAAGGTGGAGTTAAA
TCGTGTACCCGCCGGAAATTGGGTGCTCATCGAAGGCATCGATCAGTGTA
TCGTTAAGACCTCCACAATTGTGGATATTAATGTTCCAGAAGACCTCTAC
ATATTCCGACCACTGAAGTTCAACACCCAGAGCATTATCAAGATTGCTGT
GGAGCCAGTGAATCCATCCGAGCTTCCCAAGATGTTGGATGGCCTCCGCA
AGGTGAATAAATCCTATCCACTTCTCTCCACTCGAGTTGAAGAATCCGGC
GAGCATGTTATTCTGGGCACTGGCGAGCTGTACTTGGATTGTGTCATGCA
CGATCTGCGGAAGATGTACTCCGAGATCGACATCAAAGTGGCGGATCCCG
TCGTGGCTTTTTGCGAAACAGTTGTGGAAACGAGTTCCCTGAAATGTTTC
GCCGAAACGCCGAATAAGAAAAACAAAATAACCATGATCTCGGAGCCACT
GGAGAAGGGACTGGCCGAGGACATTGAGAACGGAACCGTCTGCATAAACT
GGAACAAAAAGCGCATCGGCGAGTTCTTCCAAGTCAACTACGATTGGGAT
CTGCTTGCGGCGCGTTCCATTTGGGCCTTCGGTCCCGACTCCACGGGTCC
AAATATCCTGGTCGACGACACCCTGCCCTCGGAAGTGGACAAGAACCTGC
TGACCGCGGTTAAGGATTCGATTGTGCAGGGCTTCCAATGGGGAACGCGA
GAAGGGCCGCTGTGCGAGGAGCCAATCCGTAATGTCAAGTTTAAGATTCT
CGATGGCGTCATCGCCAACGAGGCGTTGCATCGAGGCGGTGGACAGATCA
TTCCAACAGCCCGTCGTGTGGCATACTCGGCGTTTTTGATGGCCACCCCA
CGTTTAATGGAACCATATCTATTTGTGGAGGTTCAGGCGCCGGCAGATTG
TGTATCCGCTGTCTATACTGTGCTGGCCAGGCGCAGAGGCCACGTAACGC
AGGATGCTCCCGTATCGGGTTCTCCCATATATACGATCAAAGCCTTCATA
CCCGCCATTGATTCATTTGGATTTGAGACGGATCTCCGCACGCACACCCA
GGGCCAGGCCTTCTGCCTTTCGGTGTTCCATCACTGGCAGATAGTGCCTG
GCGATCCCCTGGACAAGAGCATCATAATCCGGCCACTGGAGCCGCAGCAA
GCATCCCATTTGGCCAGAGAGTTTATGATCAAGACGCGTCGCAGGAAGGG
TCTGTCCGAGGACGTGTCCATCAACAAATTCTTCGACGATCCTATGTTGC
TGGAGTTGGCACGCCAGGATGTGCTGATCAACTACCCGCTTTAGAAGCTT
TCTAGACCAT

BS10417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 2928 CG4849-PA 1..2928 17..2944 14640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-RA 3123 CG4849-RA 147..3076 16..2945 14650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27964985..27966487 1084..2586 7515 100 Plus
3R 32079331 3R 27963860..27964530 129..799 3355 100 Plus
3R 32079331 3R 27966549..27966911 2583..2945 1815 100 Plus
3R 32079331 3R 27961214..27961427 129..342 1070 100 Plus
3R 32079331 3R 27964738..27964932 890..1084 975 100 Plus
3R 32079331 3R 27961041..27961156 16..131 580 100 Plus
3R 32079331 3R 27963687..27963802 16..131 580 100 Plus
3R 32079331 3R 27964587..27964680 798..891 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:55:39 has no hits.

BS10417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:12 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 1..2928 17..2944 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:38 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 146..3078 16..2950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:14 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 148..3075 17..2944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:21 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 147..3074 17..2944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:50 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
CG4849-RA 148..3075 17..2944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:50 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27963688..27963801 17..130 100 -> Plus
3R 27963862..27964530 131..799 100 -> Plus
3R 27964589..27964680 800..891 100 -> Plus
3R 27964740..27964931 892..1083 100 -> Plus
3R 27964985..27966487 1084..2586 100 -> Plus
3R 27966553..27966910 2587..2944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:14 Download gff for BS10417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23789410..23789523 17..130 100 -> Plus
arm_3R 23789584..23790252 131..799 100 -> Plus
arm_3R 23790311..23790402 800..891 100 -> Plus
arm_3R 23790462..23790653 892..1083 100 -> Plus
arm_3R 23790707..23792209 1084..2586 100 -> Plus
arm_3R 23792275..23792632 2587..2944 100   Plus

BS10417.pep Sequence

Translation from 16 to 2943

> BS10417.pep
MDSDLYDEFGNYIGPDLDSDEEDEQSIYGQPDVQDDPEDAMDEDEVEPQE
DEDKEVTAVVLHEDKRYYPSAVEVYGPDVETIVQEEDAQPLDKPLIEPVK
KLKFQIKEQDMQETTYDMEFMADLMDTPPLIRNVALVGHLHHGKTTFVDC
LIRQTHPQFETMEERQLRYTDTLFTEQERGCSIKATPVTLVLQDVKQKSY
LLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKHAVQ
ERQAITVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDN
LLVSPILGNVCFASSLYGFCFTLKSFAKLYADTYEGVAYLDFAKRLWGDM
YFNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIAQVVGDVDTTLSDTLA
ELNVRVSKEEMKSNIRPLLRLVCNRFMGDCSGFVDMCVEHIKSPLENAKR
KVDHIYTGPKEGDIYRDMISCNQYGTLMVHSSKMYPNDDCTFFQVLARIV
SGTLHAGQEVRVLGENYTLQDEEDSRILQVGRLWVFESRYKVELNRVPAG
NWVLIEGIDQCIVKTSTIVDINVPEDLYIFRPLKFNTQSIIKIAVEPVNP
SELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKM
YSEIDIKVADPVVAFCETVVETSSLKCFAETPNKKNKITMISEPLEKGLA
EDIENGTVCINWNKKRIGEFFQVNYDWDLLAARSIWAFGPDSTGPNILVD
DTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDGVIA
NEALHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY
TVLARRRGHVTQDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSVFHHWQIVPGDPLDKSIIIRPLEPQQASHLAREFMIKTRRRKGLSEDV
SINKFFDDPMLLELARQDVLINYPL*

BS10417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4849-PA 975 CG4849-PA 1..975 1..975 5093 100 Plus
EF2-PD 844 CG2238-PD 4..842 116..957 1528 36.8 Plus
EF2-PC 844 CG2238-PC 4..842 116..957 1528 36.8 Plus
EF2-PA 844 CG2238-PA 4..842 116..957 1528 36.8 Plus
CG33158-PB 1033 CG33158-PB 427..1019 439..952 477 25.9 Plus