Clone BS10419 Report

Search the DGRC for BS10419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptdikar-RB
Protein status:BS10419.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10419.3prime Sequence

904 bp (844 high quality bases) assembled on 2006-04-19

> BS10419.3prime
ATGGTCTAGAAAGCTTCTAGGAACATTGGCGTGCTAACCGTCTGCGTGTG
CGCTGCTGCGATTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTG
CTGCTGCTGCGGCGGTGCCAACCAGTGTGCGTTTTGCCGATCCTGGTAGA
GATTCTCCCGCTCACGACGCTGGCGCTCCTCCTCCTGGCGTGCCTTCAAC
TCCGCGATGTTGCGAATGCGGCTGGAGTTGCGCACTTGCAAAAGTTTCCT
ACGCCTCAAACGCTCACGTTCGCGGAAAAGCTGCGGCAGCTTGGGCAGAA
AGTTGTCATCGAGTATGTTAAAGAGTTCGCGCTCCTTGGCGTTCGTCGAG
GTCTTAAACTTGGCGGCCAAGTTTTGCCAGTCCTCTTCGGTGAAGCAGAT
GACTTGCCAAACTGTACCGTTGCTGCCGATGCCCTTGCTGTTGGATGCTC
CGCCAGTTGAGGCTCCAGCGCCACCTGATCCCGAACCCGAACTGGAGGAG
GCCGATCCACCGGTGGCTTTGTCCTCCCGATATAGTCGCGTGCCGTAGAA
GTACCAGTAGCCGGAATTCTTGGCGTCGTAGCCCAGAGGCTCCACGCGCA
GACTATCCGCCTCTAGATTGCTGAGGATGACCTGCACATCGACGGAGTCC
AGGCGAAAGTGGCACAGATCGTGCAGAATGTGCAGGCGCTTGCGCACGGG
CAGCGACTGGAAGTCAATGTCCGTGTCGAAGTGGTTCTCGGTCTGGTGCA
GGCGACACTGTTGGCGCANGAAGCGACGCAAGAACATCTGATAGTTGCTG
TGTGTGATTTCCTTGGCTACCGTCTGTAGCGCATCGCAGCCCTTGAGCAG
GCGCACAATTAACTCGGGCACTAGGGCGACCTGATCCTCATCGCTGGTAC
CATC

BS10419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32393-PA 1029 dikar-RA 142..1029 904..17 4421 99.8 Minus
CG32393-PB 1029 dikar-RB 142..1029 904..17 4421 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 3009 CG42799-RE 388..1275 904..17 4429 99.9 Minus
dikar-RB 1578 CG42799-RB 351..1238 904..17 4429 99.9 Minus
dikar-RG 11160 CG42799-RG 388..1253 904..39 4319 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741615 246..904 3284 99.8 Plus
3L 28110227 3L 6740645..6740873 17..245 1145 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:41:31 has no hits.

BS10419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:21 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-PB 142..1029 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:56 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32393-PB 142..1029 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:26 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 351..1242 14..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:31 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 351..1242 14..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:31 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6740641..6740873 14..245 99 <- Plus
3L 6740957..6741615 246..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:26 Download gff for BS10419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733741..6733973 14..245 99 <- Plus
arm_3L 6734057..6734715 246..904 99   Plus

BS10419.5prime Sequence

875 bp (810 high quality bases) assembled on 2006-04-19

> BS10419.5prime
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAAGCACGCC

BS10419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32393-PA 1029 dikar-RA 1..859 17..875 4270 99.8 Plus
CG32393-PB 1029 dikar-RB 1..859 17..875 4270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RG 11160 CG42799-RG 247..1105 17..875 4280 99.9 Plus
dikar-RE 3009 CG42799-RE 247..1105 17..875 4280 99.9 Plus
dikar-RD 11586 CG42799-RD 247..1105 17..875 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741641 816..132 3425 100 Minus
3L 28110227 3L 6741701..6741792 134..43 460 100 Minus
3L 28110227 3L 6740815..6740873 875..817 280 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 06:40:29 has no hits.

BS10419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:22 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-PB 1..859 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:57 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32393-PB 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:28 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RD 242..1105 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:03 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
dikar-RD 242..1105 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:03 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6740815..6740873 817..875 98 <- Minus
3L 6740957..6741639 134..816 100 <- Minus
3L 6741702..6741790 45..133 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:28 Download gff for BS10419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733915..6733973 817..875 98 <- Minus
arm_3L 6734057..6734739 134..816 100 <- Minus
arm_3L 6734802..6734890 45..133 100 <- Minus

BS10419.complete Sequence

1061 bp (1061 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636649

> BS10419.complete
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGAGCGCCAGCGTCGTGA
GCGGGAGAATCTCTACCAGGATCGGCAAAACGCACACTGGTTGGCACCGC
CGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAA
TCGCAGCAGCGCACACGCAGACGGTTAGCACGCCAATGTTCCTAGAAGCT
TTCTAGACCAT

BS10419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 1029 CG42799-PE 1..1029 17..1045 5145 100 Plus
dikar-RB 1029 CG42799-PB 1..1029 17..1045 5145 100 Plus
dikar-RG 9243 CG42799-PG 1..1007 17..1023 5035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-RE 3009 CG42799-RE 247..1275 17..1045 5145 100 Plus
dikar-RB 1578 CG42799-RB 210..1238 17..1045 5145 100 Plus
dikar-RG 11160 CG42799-RG 247..1253 17..1023 5035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6740957..6741641 816..132 3425 100 Minus
3L 28110227 3L 6740645..6740873 1045..817 1145 100 Minus
3L 28110227 3L 6741701..6741792 134..43 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:47:50 has no hits.

BS10419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:34 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 1..1029 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:11 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 205..1242 9..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:28 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 210..1238 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:34 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 205..1242 9..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:35 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
dikar-RB 210..1238 17..1045 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:35 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6740645..6740873 817..1045 100 <- Minus
3L 6740957..6741639 134..816 100 <- Minus
3L 6741702..6741790 45..133 100 <- Minus
3L 6741915..6741942 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:28 Download gff for BS10419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6733745..6733973 817..1045 100 <- Minus
arm_3L 6734057..6734739 134..816 100 <- Minus
arm_3L 6734802..6734890 45..133 100 <- Minus
arm_3L 6735015..6735042 17..44 100   Minus

BS10419.pep Sequence

Translation from 16 to 1044

> BS10419.pep
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*

BS10419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
dikar-PE 342 CG42799-PE 1..342 1..342 1781 100 Plus
dikar-PB 342 CG32393-PB 1..342 1..342 1781 100 Plus
dikar-PG 3080 CG42799-PG 1..336 1..336 1750 100 Plus
dikar-PC 3080 CG42799-PC 1..336 1..336 1750 100 Plus
dikar-PD 3222 CG42799-PD 1..336 1..336 1750 100 Plus