Clone Sequence Records
BS10419.3prime Sequence
904 bp (844 high quality bases) assembled on 2006-04-19
> BS10419.3prime
ATGGTCTAGAAAGCTTCTAGGAACATTGGCGTGCTAACCGTCTGCGTGTG
CGCTGCTGCGATTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTG
CTGCTGCTGCGGCGGTGCCAACCAGTGTGCGTTTTGCCGATCCTGGTAGA
GATTCTCCCGCTCACGACGCTGGCGCTCCTCCTCCTGGCGTGCCTTCAAC
TCCGCGATGTTGCGAATGCGGCTGGAGTTGCGCACTTGCAAAAGTTTCCT
ACGCCTCAAACGCTCACGTTCGCGGAAAAGCTGCGGCAGCTTGGGCAGAA
AGTTGTCATCGAGTATGTTAAAGAGTTCGCGCTCCTTGGCGTTCGTCGAG
GTCTTAAACTTGGCGGCCAAGTTTTGCCAGTCCTCTTCGGTGAAGCAGAT
GACTTGCCAAACTGTACCGTTGCTGCCGATGCCCTTGCTGTTGGATGCTC
CGCCAGTTGAGGCTCCAGCGCCACCTGATCCCGAACCCGAACTGGAGGAG
GCCGATCCACCGGTGGCTTTGTCCTCCCGATATAGTCGCGTGCCGTAGAA
GTACCAGTAGCCGGAATTCTTGGCGTCGTAGCCCAGAGGCTCCACGCGCA
GACTATCCGCCTCTAGATTGCTGAGGATGACCTGCACATCGACGGAGTCC
AGGCGAAAGTGGCACAGATCGTGCAGAATGTGCAGGCGCTTGCGCACGGG
CAGCGACTGGAAGTCAATGTCCGTGTCGAAGTGGTTCTCGGTCTGGTGCA
GGCGACACTGTTGGCGCANGAAGCGACGCAAGAACATCTGATAGTTGCTG
TGTGTGATTTCCTTGGCTACCGTCTGTAGCGCATCGCAGCCCTTGAGCAG
GCGCACAATTAACTCGGGCACTAGGGCGACCTGATCCTCATCGCTGGTAC
CATC
BS10419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32393-PA | 1029 | dikar-RA | 142..1029 | 904..17 | 4421 | 99.8 | Minus |
CG32393-PB | 1029 | dikar-RB | 142..1029 | 904..17 | 4421 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 3009 | CG42799-RE | 388..1275 | 904..17 | 4429 | 99.9 | Minus |
dikar-RB | 1578 | CG42799-RB | 351..1238 | 904..17 | 4429 | 99.9 | Minus |
dikar-RG | 11160 | CG42799-RG | 388..1253 | 904..39 | 4319 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741615 | 246..904 | 3284 | 99.8 | Plus |
3L | 28110227 | 3L | 6740645..6740873 | 17..245 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:41:31 has no hits.
BS10419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:21 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-PB | 142..1029 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:56 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32393-PB | 142..1029 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:26 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 351..1242 | 14..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:31 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 351..1242 | 14..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:31 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740641..6740873 | 14..245 | 99 | <- | Plus |
3L | 6740957..6741615 | 246..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:26 Download gff for
BS10419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733741..6733973 | 14..245 | 99 | <- | Plus |
arm_3L | 6734057..6734715 | 246..904 | 99 | | Plus |
BS10419.5prime Sequence
875 bp (810 high quality bases) assembled on 2006-04-19
> BS10419.5prime
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAAGCACGCC
BS10419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32393-PA | 1029 | dikar-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG32393-PB | 1029 | dikar-RB | 1..859 | 17..875 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RG | 11160 | CG42799-RG | 247..1105 | 17..875 | 4280 | 99.9 | Plus |
dikar-RE | 3009 | CG42799-RE | 247..1105 | 17..875 | 4280 | 99.9 | Plus |
dikar-RD | 11586 | CG42799-RD | 247..1105 | 17..875 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741641 | 816..132 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 6741701..6741792 | 134..43 | 460 | 100 | Minus |
3L | 28110227 | 3L | 6740815..6740873 | 875..817 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:40:29 has no hits.
BS10419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:22 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-PB | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:59:57 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32393-PB | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:28 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RD | 242..1105 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:03 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RD | 242..1105 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:03 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740815..6740873 | 817..875 | 98 | <- | Minus |
3L | 6740957..6741639 | 134..816 | 100 | <- | Minus |
3L | 6741702..6741790 | 45..133 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:28 Download gff for
BS10419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733915..6733973 | 817..875 | 98 | <- | Minus |
arm_3L | 6734057..6734739 | 134..816 | 100 | <- | Minus |
arm_3L | 6734802..6734890 | 45..133 | 100 | <- | Minus |
BS10419.complete Sequence
1061 bp (1061 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636649
> BS10419.complete
GAAGTTATCAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTC
AATCATGGTGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGT
TCTGCCTTTGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCT
GCTCTCCGATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGT
TAATTGTGCGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAG
GAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCA
ACAGTGTCGCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACT
TCCAGTCGCTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGC
CACTTTCGCCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGA
GGCGGATAGTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCG
GCTACTGGTACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACC
GGTGGATCGGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGC
CTCAACTGGCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAG
TTTGGCAAGTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCC
AAGTTTAAGACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACT
CGATGACAACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGC
GTTTGAGGCGTAGGAAACTTTTGCAAGTGCGCAACTCCAGCCGCATTCGC
AACATCGCGGAGTTGAAGGCACGCCAGGAGGAGGAGCGCCAGCGTCGTGA
GCGGGAGAATCTCTACCAGGATCGGCAAAACGCACACTGGTTGGCACCGC
CGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAGCAGCAA
TCGCAGCAGCGCACACGCAGACGGTTAGCACGCCAATGTTCCTAGAAGCT
TTCTAGACCAT
BS10419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 1029 | CG42799-PE | 1..1029 | 17..1045 | 5145 | 100 | Plus |
dikar-RB | 1029 | CG42799-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
dikar-RG | 9243 | CG42799-PG | 1..1007 | 17..1023 | 5035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-RE | 3009 | CG42799-RE | 247..1275 | 17..1045 | 5145 | 100 | Plus |
dikar-RB | 1578 | CG42799-RB | 210..1238 | 17..1045 | 5145 | 100 | Plus |
dikar-RG | 11160 | CG42799-RG | 247..1253 | 17..1023 | 5035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6740957..6741641 | 816..132 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 6740645..6740873 | 1045..817 | 1145 | 100 | Minus |
3L | 28110227 | 3L | 6741701..6741792 | 134..43 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:47:50 has no hits.
BS10419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:34 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:11 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 205..1242 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:28 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 210..1238 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:34 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 205..1242 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:35 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dikar-RB | 210..1238 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:35 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6740645..6740873 | 817..1045 | 100 | <- | Minus |
3L | 6740957..6741639 | 134..816 | 100 | <- | Minus |
3L | 6741702..6741790 | 45..133 | 100 | <- | Minus |
3L | 6741915..6741942 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:28 Download gff for
BS10419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6733745..6733973 | 817..1045 | 100 | <- | Minus |
arm_3L | 6734057..6734739 | 134..816 | 100 | <- | Minus |
arm_3L | 6734802..6734890 | 45..133 | 100 | <- | Minus |
arm_3L | 6735015..6735042 | 17..44 | 100 | | Minus |
BS10419.pep Sequence
Translation from 16 to 1044
> BS10419.pep
MVSTFIGLLDIQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGT
SDEDQVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFLRQQCRLH
QTENHFDTDIDFQSLPVRKRLHILHDLCHFRLDSVDVQVILSNLEADSLR
VEPLGYDAKNSGYWYFYGTRLYREDKATGGSASSSSGSGSGGAGASTGGA
SNSKGIGSNGTVWQVICFTEEDWQNLAAKFKTSTNAKERELFNILDDNFL
PKLPQLFRERERLRRRKLLQVRNSSRIRNIAELKARQEEERQRRERENLY
QDRQNAHWLAPPQQQQQQQQQQQQQQQQSQQRTRRRLARQCS*
BS10419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dikar-PE | 342 | CG42799-PE | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PB | 342 | CG32393-PB | 1..342 | 1..342 | 1781 | 100 | Plus |
dikar-PG | 3080 | CG42799-PG | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PC | 3080 | CG42799-PC | 1..336 | 1..336 | 1750 | 100 | Plus |
dikar-PD | 3222 | CG42799-PD | 1..336 | 1..336 | 1750 | 100 | Plus |