Clone BS10422 Report

Search the DGRC for BS10422

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptcrm-RA
Protein status:BS10422.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10422.3prime Sequence

934 bp (848 high quality bases) assembled on 2006-04-19

> BS10422.3prime
ATGGTCTAGAAAGCTTCTAATCTTTCTCCTGCTGCTGCAGCAGGGCGGCG
ATTTCCTGGAACTTGTGCCGAAAGTCCACGCTGCTCTCGCTGATCACCGA
CATGCTTGACGACGGATCCAGTATATCCCTGGTGGCATCAATCTCATCCA
AATGCCCCAGCAGCGACGTCAACGAGAAGTCATTGATATTGTCCTCCAGC
CAGCGTGCGTTGGATGTTGAATCTCTGAGCAAGTGCATCGGACTCATGCT
GCCTTGGAAGAAGCTTTGAGTTGTGCTCCCGTCTTGGGCCGCCTCGTTCA
GGGAACTGCTGACGTCCGTCCTGTTGGTGGCCACGCAAATGTCCAGATTG
GGCATGTCTCGAGCGCTGACCTGCGTGGCCTCGTCGTTGAGGAACTCCAA
TGCCCCCTGATCCCCTGGCTCTTGATCCTGTGAAGCGGTCGTGGCATTCA
TGCTGGAATCGGGTTTCGAGCCAGAGGTGCTGATGCCAGCGGAACTTATG
CCATCCACGCGATCAATCGGCTCGAAAAGGCCACTGTGGAGTTGGCGCAC
ACTCAGCAGATCGTACGGACGATCGCCAGCGGATGTGGGTGGTAGGAGAC
GGCGCTGCACAAGCACCTGACGACTGATCTTTTGCCGTGTGAGCGCTGAG
AGTTGGCGCACAGGATCGATGTTGGATATCGGCCGCCGCACTGGCAGCAT
CGGCGTTCGGAAATTGCCCTCAACCATGCCGCCCACTCCGCCGGTGGCCG
TCGCCTCTGCCAGCTGCTGCGCCTTGGTCATCAGGTCCCGCTTGCGATCG
CACGTGTGGCCGCAGTTGCATTGGCGCTTGCGCACGCGCTCGCTGAGATT
GGCCACGAGTAGCAGGTGCTTCAGCTTGTTGCTCACCGACGATGTGGTGA
CGGCCCTGACGCGTTCCACGCTATCACAGTCGTT

BS10422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2714-PB 2949 crm-RB 2032..2949 934..17 4590 100 Minus
CG2714-PA 2949 crm-RA 2032..2949 934..17 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 2108..3025 934..17 4590 100 Minus
crm-RB 3837 CG2714-RB 2165..3082 934..17 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2735396..2735769 271..644 1870 100 Plus
X 23542271 X 2735837..2736127 644..934 1455 100 Plus
X 23542271 X 2735176..2735328 118..270 765 100 Plus
X 23542271 X 2735003..2735105 17..119 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:43:16 has no hits.

BS10422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:25 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-PA 2032..2949 17..934 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:01 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2714-PA 2032..2949 17..934 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:22:45 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 2165..3085 14..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:46 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 2165..3085 14..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:46 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2735000..2735104 14..118 99 <- Plus
X 2735177..2735328 119..270 100 <- Plus
X 2735396..2735768 271..643 100 <- Plus
X 2735837..2736127 644..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:22:45 Download gff for BS10422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2629033..2629137 14..118 99 <- Plus
arm_X 2629210..2629361 119..270 100 <- Plus
arm_X 2629429..2629801 271..643 100 <- Plus
arm_X 2629870..2630160 644..934 100   Plus

BS10422.5prime Sequence

857 bp (853 high quality bases) assembled on 2006-04-19

> BS10422.5prime
GAAGTTATCAGTCGACATGGAGGAACTGTCCAAGCAGCCGCCGCCACCCC
CGCTGACGCAGCCGCCGCCGCCGTCGTCATCCGTGTCCATTGAGGAGCCG
CTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTTGTTAACTCGATAGCTAA
GCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGACCATGCACAATTGTCCGG
GAACGCGGGCCAGTGCCCGGGTCATACAGAAGATGAAGCAGGACCAGACG
CGCCCGATGACACCGCCGCCCAGCGAACGGGAGCCGAACAAAAAGGAGGA
GAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAAGACGGGCAGCGGGAAGA
CCACCTGGACGAATGTGGAGCGCAACTGCTTCTTCGACGCCCTCAACGAA
TTCGGCAAGGACTTCGAGGCGGTGGCCAACTGCATCAATGCCAAGCTGAA
GCGCCGCAATGCCAACAGCGACTATAGTTTCAAAACCAAGGACCAAGTTC
GCCAGCACTATTACCAGACCCATCACAAGATTTGCAAATATGTGCGCTTC
TCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTGTACACGCTGATCAACTA
CGGCGAGATGCGGCGCAAGCTGCAGTTCCTCACGGAGAAGCACTTCATGA
AGCTGAAGCAGCTGGTCTACCAGGGCCAAATAACCGTGCGTTGCAAGGGC
AAGAACATTCGCATTAAGACGCCATCGTGCAAGGCGCTCCGGCGGCTAAA
TCAATTGGATGACTCACTGGAGGATATCCGGCTGCCCAGCAAGGTGGAGG
TGCTGGTGACTCCCGCCAATATGGAGGCCTTCGGACGCGTCCAGTCACTG
GCGCAGA

BS10422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2714-PB 2949 crm-RB 1..841 17..857 4205 100 Plus
CG2714-PA 2949 crm-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 75..917 15..857 4215 100 Plus
crm-RB 3837 CG2714-RB 132..974 15..857 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2737922..2738464 557..15 2715 100 Minus
X 23542271 X 2737470..2737674 761..557 1025 100 Minus
X 23542271 X 2737318..2737414 857..761 485 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:43:40 has no hits.

BS10422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:26 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:03 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2714-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:05 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 124..973 7..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:26 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
crm-RB 124..973 7..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:26 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2737319..2737413 762..856 100 <- Minus
X 2737470..2737673 558..761 100 <- Minus
X 2737922..2738472 7..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:05 Download gff for BS10422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2631352..2631446 762..856 100 <- Minus
arm_X 2631503..2631706 558..761 100 <- Minus
arm_X 2631955..2632505 7..557 99   Minus

BS10422.complete Sequence

2981 bp assembled on 2007-11-30

GenBank Submission: FJ636650

> BS10422.complete
GAAGTTATCAGTCGACATGGAGGAACTGTCCAAGCAGCCGCCGCCACCCC
CGCTGACGCAGCCGCCGCCGCCGTCGTCATCCGTGTCCATTGAGGAGCCG
CTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTTGTTAACTCGATAGCTAA
GCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGACCATGCACAATTGTCCGG
GAACGCGGGCCAGTGCCCGGGTCATACAGAAGATGAAGCAGGACCAGACG
CGCCCGATGACACCGCCGCCCAGCGAACGGGAGCCGAACAAAAAGGAGGA
GAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAAGACGGGCAGCGGGAAGA
CCACCTGGACGAATGTGGAGCGCAACTGCTTCTTCGACGCCCTCAACGAA
TTCGGCAAGGACTTCGAGGCGGTGGCCAACTGCATCAATGCCAAGCTGAA
GCGCCGCAATGCCAACAGCGACTATAGTTTCAAAACCAAGGACCAAGTTC
GCCAGCACTATTACCAGACCCATCACAAGATTTGCAAATATGTGCGCTTC
TCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTGTACACGCTGATCAACTA
CGGCGAGATGCGGCGCAAGCTGCAGTTCCTCACGGAGAAGCACTTCATGA
AGCTGAAGCAGCTGGTCTACCAGGGCCAAATAACCGTGCGTTGCAAGGGC
AAGAACATTCGCATTAAGACGCCATCGTGCAAGGCGCTCCGGCGGCTAAA
TCAATTGGATGACTCACTGGAGGATATCCGGCTGCCCAGCAAGGTGGAGG
TGCTGGTGACTCCCGCCAATATGGAGGCCTTCGGACGCGTCCAGTCACTG
GCGCAGAATCCACGCGGCAGGATCATAGTTCCGCTGCACAAGAAACTAAT
CAGCTTCATCAAGACGTTCGAGTACAAATGGCGCAGCGCCAATCAGCGTT
TGCACGAGGAGAAGAGTGCATACTTTTCCAGCAGCCTGCCATCTGCTGCG
TCCAACAACAATAACAACAACAATGAAACGGAACCATTACAGCCGTCAGT
TGCATCGCTGGATCCCTCAATGTGCTTCCAGCCCCGGCCGGGAGTGGCCA
TCCACCGACCTTTGCTCAGCATCACCGCCTACCTAAGCAGCATCAGTATT
TGCTTGACGGCATACGAGGAGCGCATGGGCTTCAAAGTGCGCAGCGAGAC
CTTGGGCAATTTGGCCGGCATGTCGGTGGCGGCCAACAAGCGACTACGAA
CGGAAAGCGGCTCCGAGAAGCGTTCGCCGGAGACAAAGAAACCCAAATCG
AGTGCCAGCCCGCCGCTGGAGAAGAGTTTGGACGACGGGCCCTTGGAGGG
CAATCTGATGAAGATGGAGAATAGCAGCGGTGATGAGCTGGGCGAGGAGA
TTCATGAGTTTCTGGGCGATATATTGGAGGCCATGCAGCATCCGCAAGCA
GCCACTATTCCAGCTCTTTCGGCCACCACTGGTGATACCACAACTGTTGC
TGTTGCGCTTGAAACATCGCACGATCCTGTACAACAGGCTTATCCGGCCA
ACGCGGATCTATCTAATGCCATGGCGACATCTGTTCTACAAACTTCCTGT
GCTGCAGCTCCCGCTCCTTCGACTCCTGTAACCGGTTCTTTGGCGGCTCC
ATCCGTAGCCCGCTCCAAACGCAAAGAAGCTAAGGAGGCGGCGGCCGCGG
CACAGGCTCGAAATTTTAAGCCACTGCTCAGCGACGATATACTGAAGAGA
ATCCGCAAGGGCTGGACGCAGGCGAATGCGGCGGATATAACCATCGGTGA
TCTGTATGTCGTTTTTGGCCAGGATTCCAAGCTGGAGCTGGAGTATTATT
GGTGTGAGGTCGACAGTTCGACGGCCATGGCATCCAGCATACTAACAATC
AACACGGTAACGCCTAGCTCCTCGTCGGTGGCCACCCAAACCGGCAGCGC
CGCCTCGAACGCCAACCAAACAGGCGCATCTTCCAACTGCTACGTCAGCG
CATCGAGCAATTCGAGCACCTCGAGCACTTCGCTGCCCTACAATCCCAAC
GACTGTGATAGCGTGGAACGCGTCAGGGCCGTCACCACATCGTCGGTGAG
CAACAAGCTGAAGCACCTGCTACTCGTGGCCAATCTCAGCGAGCGCGTGC
GCAAGCGCCAATGCAACTGCGGCCACACGTGCGATCGCAAGCGGGACCTG
ATGACCAAGGCGCAGCAGCTGGCAGAGGCGACGGCCACCGGCGGAGTGGG
CGGCATGGTTGAGGGCAATTTCCGAACGCCGATGCTGCCAGTGCGGCGGC
CGATATCCAACATCGATCCTGTGCGCCAACTCTCAGCGCTCACACGGCAA
AAGATCAGTCGTCAGGTGCTTGTGCAGCGCCGTCTCCTACCACCCACATC
CGCTGGCGATCGTCCGTACGATCTGCTGAGTGTGCGCCAACTCCACAGTG
GCCTTTTCGAGCCGATTGATCGCGTGGATGGCATAAGTTCCGCTGGCATC
AGCACCTCTGGCTCGAAACCCGATTCCAGCATGAATGCCACGACCGCTTC
ACAGGATCAAGAGCCAGGGGATCAGGGGGCATTGGAGTTCCTCAACGACG
AGGCCACGCAGGTCAGCGCTCGAGACATGCCCAATCTGGACATTTGCGTG
GCCACCAACAGGACGGACGTCAGCAGTTCCCTGAACGAGGCGGCCCAAGA
CGGGAGCACAACTCAAAGCTTCTTCCAAGGCAGCATGAGTCCGATGCACT
TGCTCAGAGATTCAACATCCAACGCACGCTGGCTGGAGGACAATATCAAT
GACTTCTCGTTGACGTCGCTGCTGGGGCATTTGGATGAGATTGATGCCAC
CAGGGATATACTGGATCCGTCGTCAAGCATGTCGGTGATCAGCGAGAGCA
GCGTGGACTTTCGGCACAAGTTCCAGGAAATCGCCGCCCTGCTGCAGCAG
CAGGAGAAAGATTAGAAGCTTTCTAGACCAT

BS10422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 2949 CG2714-PA 1..2949 17..2965 14745 100 Plus
crm-RB 2949 CG2714-PB 1..2949 17..2965 14745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
crm-RA 3780 CG2714-RA 75..3025 15..2965 14755 100 Plus
crm-RB 3837 CG2714-RB 132..3082 15..2965 14755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2735837..2737414 2338..761 7890 100 Minus
X 23542271 X 2737922..2738464 557..15 2715 100 Minus
X 23542271 X 2735396..2735769 2711..2338 1870 100 Minus
X 23542271 X 2737470..2737674 761..557 1025 100 Minus
X 23542271 X 2735176..2735328 2864..2712 765 100 Minus
X 23542271 X 2735003..2735105 2965..2863 515 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:15 has no hits.

BS10422.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:13 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 1..2949 17..2965 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:40 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 67..3028 7..2968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:44 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RB 134..3082 17..2965 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:20 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RA 77..3025 17..2965 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:09 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
crm-RB 134..3082 17..2965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:09 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
X 2737470..2737673 558..761 100 <- Minus
X 2735003..2735104 2864..2965 100 <- Minus
X 2735177..2735328 2712..2863 100 <- Minus
X 2735396..2735768 2339..2711 100 <- Minus
X 2735837..2737413 762..2338 100 <- Minus
X 2737922..2738462 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:44 Download gff for BS10422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2629036..2629137 2864..2965 100 <- Minus
arm_X 2629210..2629361 2712..2863 100 <- Minus
arm_X 2629429..2629801 2339..2711 100 <- Minus
arm_X 2629870..2631446 762..2338 100 <- Minus
arm_X 2631503..2631706 558..761 100 <- Minus
arm_X 2631955..2632495 17..557 100   Minus

BS10422.pep Sequence

Translation from 16 to 2964

> BS10422.pep
MEELSKQPPPPPLTQPPPPSSSVSIEEPLPNGKGGGAVVVNSIAKLPEEE
LLGSVTMHNCPGTRASARVIQKMKQDQTRPMTPPPSEREPNKKEEKAAQK
TPSQLKTGSGKTTWTNVERNCFFDALNEFGKDFEAVANCINAKLKRRNAN
SDYSFKTKDQVRQHYYQTHHKICKYVRFSEELKKPAQELYTLINYGEMRR
KLQFLTEKHFMKLKQLVYQGQITVRCKGKNIRIKTPSCKALRRLNQLDDS
LEDIRLPSKVEVLVTPANMEAFGRVQSLAQNPRGRIIVPLHKKLISFIKT
FEYKWRSANQRLHEEKSAYFSSSLPSAASNNNNNNNETEPLQPSVASLDP
SMCFQPRPGVAIHRPLLSITAYLSSISICLTAYEERMGFKVRSETLGNLA
GMSVAANKRLRTESGSEKRSPETKKPKSSASPPLEKSLDDGPLEGNLMKM
ENSSGDELGEEIHEFLGDILEAMQHPQAATIPALSATTGDTTTVAVALET
SHDPVQQAYPANADLSNAMATSVLQTSCAAAPAPSTPVTGSLAAPSVARS
KRKEAKEAAAAAQARNFKPLLSDDILKRIRKGWTQANAADITIGDLYVVF
GQDSKLELEYYWCEVDSSTAMASSILTINTVTPSSSSVATQTGSAASNAN
QTGASSNCYVSASSNSSTSSTSLPYNPNDCDSVERVRAVTTSSVSNKLKH
LLLVANLSERVRKRQCNCGHTCDRKRDLMTKAQQLAEATATGGVGGMVEG
NFRTPMLPVRRPISNIDPVRQLSALTRQKISRQVLVQRRLLPPTSAGDRP
YDLLSVRQLHSGLFEPIDRVDGISSAGISTSGSKPDSSMNATTASQDQEP
GDQGALEFLNDEATQVSARDMPNLDICVATNRTDVSSSLNEAAQDGSTTQ
SFFQGSMSPMHLLRDSTSNARWLEDNINDFSLTSLLGHLDEIDATRDILD
PSSSMSVISESSVDFRHKFQEIAALLQQQEKD*

BS10422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
crm-PA 982 CG2714-PA 1..982 1..982 5010 100 Plus
crm-PB 982 CG2714-PB 1..982 1..982 5010 100 Plus