Clone BS10425 Report

Search the DGRC for BS10425

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptdlt-RA
Protein status:BS10425.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10425.3prime Sequence

956 bp (825 high quality bases) assembled on 2006-04-19

> BS10425.3prime
ATGGTCTAGAAAGCTTTTAAAAGTTATCCAGATCCCGCGATAAGTCGGCC
AGCATCTCCATGAAGAGATGCGACTTGGCCTCGTCTTCGGGACTATCGCC
AGAGGCGTAATGGGCTTCGGAATCCTTTCCGGACAGAGAGAGTTGCTGCA
GAAGTTCGGAAAGCATGCACCACACTTTCGGCGACCAGTTCTCGGCAAAG
AGCGGCATGAAGAGTTCGTTGAGATGATCGGCCCGTATAGCTCCAGACTG
TAGCATGGATCTAAGGATCGTCTCCAGCATCCGAAAGCTGTCCGCACTGT
TTGCCATCTCCTGCACAAAACTAATGCTGATCAAGCCGTCAAAGATTCCG
GGTGAAGCTTTACTGTCCATAAGCTGCTGTGATCGCCACACCGAACAGCT
GGCTGAAATTATATCCTTGTCGAGGAAATTCGGTTTTCTGGTAATGAGCA
ACTGAAGCAAATGAACTAATCCAGACCCAATGAGGTGATAGAAAACAGTG
GGCATTTTAGGCAACAGGACCGCCTTTTGGGCTTTTCGAAGCAGCTCGGC
CAGATCTTCTTGACTGCCCACATATTCTGGCCGCAAGCTGAGGCAGTGCA
ACCACTGCTGGAGCTGATAGAGAAACTCCGACAGGCTGAATCCAATATCC
GGACTGAGCTGGAGCTCACTGGAGCCGCCGCCACCTGCAGCTGCTGCATC
TGCCTTGTTCCTATTGCAGTTGCACACTTTGGTGGCTAACTCCTGAAGGT
CGCCATGATAAAATGTGGACTGAAGCACGCTCGACTGGAGCCACTGTTGC
AGCTGAGTCTGGGCTTGCACCCGGATTAAATGAGCATATGTAGACCGCAA
TACCGCATTGGTGCTGGAGGGCAGAAGGCCATCCAAGGAGTGCTCTATGC
GCCTGTCCAGCATTTGGTGCACATGCTCCTTCCAACGCTGACACGCATTC
TCCCTG

BS10425.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32315-PA 3723 dlt-RA 2784..3723 956..17 4700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
dlt-RA 4000 CG32315-RA 2999..3938 956..17 4700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1789693..1790632 17..956 4700 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:48:53 has no hits.

BS10425.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:32 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
dlt-PA 2784..3723 17..956 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:10 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32315-PA 2784..3723 17..956 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:46 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 2999..3942 10..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:52:02 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 2999..3942 10..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:52:02 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1789689..1790632 10..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:46 Download gff for BS10425.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1789689..1790632 10..956 99   Plus

BS10425.5prime Sequence

916 bp (742 high quality bases) assembled on 2006-04-19

> BS10425.5prime
GAAGTTATCAGTCGACATGACTGCAGAGCTCAAAGCGTCAGATACAGAAA
TGACGAAGCCGGAAGAGAGGCATCTGCTGCAGCTGCTTGCGCAACTGGAG
AAGGTGCCGCACCACCAGCTGGAGCAAAAGTTCGTCGCCTATTTTAAAAA
GGTTGGCAAGGGTGATAACCAGAGTAACTGCACACTAGAGGACTTCGCCA
CCTACTTTTTAGGTGCACTGCGTCAAAGCACAAAGAGGTACTACTATTCG
CAAAACTCGGAGACACCCGTGTTTCCCTTGACCCCCATCCATCAGCTCAA
GCCGCCGGTCGCCGATGTGGTCAAGGAGGAGGAACAGCAGCAGCTCAATG
AGTCCTCGATCCTTAGCCGGAGCAGCTGCAGTATGTCCTCCACTTCGAAT
ACTACTCCGGCTCCCCAGCAGCCGCAGGGCAGAAGATCAACGCCAGGAAG
TGGCGCCCAGTTTTGCAGCACGCCTAACAGAAGCGGCGGTGGGGGAGCAG
GAGGAGGGCACAGCATCTGCTTGGGCAACTTTCTGGTCAATACACCTATC
CAGAGCCATCAGCGATCTAAGAAGAAGATCACGCCCCAAAAACAGCAGCA
AAATCAACATGCATCATTGGGTTCAGGAACTGGAGCTGGAGCCACGCCAC
AATCCAAGCCGCGGCGACGTGTCTTACCCATGACCATTAGCAAGAATGTT
TCGGCCAGCTCCTCTTTCGGAGACACCAGTTCCTTTAGCAATGAAAATAA
CTTTTGGCGAATCTCGCAGAGCAGCGAAATCTTCGATAGAAGCCAAGAAG
CAGCCCTGGAAATGGAGGCCCGCAAGTTCCTGTTGCTCAAAAAGCAGGAA
ATCAAAAGCGAAGCGCCTGTGAATGTTAGTCAACAGGAGAGGACACCCGA
AGATGAGGTTTCCCTG

BS10425.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32315-PA 3723 dlt-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
dlt-RA 4000 CG32315-RA 214..1116 15..916 4490 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1792521..1793417 911..15 4485 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:30:34 has no hits.

BS10425.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:33 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
dlt-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:11 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32315-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:46:15 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 205..1116 7..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:35 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 205..1116 7..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:35 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1792515..1793426 7..916 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:46:15 Download gff for BS10425.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1792515..1793426 7..916 99   Minus

BS10425.complete Sequence

3755 bp assembled on 2007-11-30

GenBank Submission: FJ636653

> BS10425.complete
GAAGTTATCAGTCGACATGACTGCAGAGCTCAAAGCGTCAGATACAGAAA
TGACGAAGCCGGAAGAGAGGCATCTGCTGCAGCTGCTTGCGCAACTGGAG
AAGGTGCCGCACCACCAGCTGGAGCAAAAGTTCGTCGCCTATTTTAAAAA
GGTTGGCAAGGGTGATAACCAGAGTAACTGCACACTAGAGGACTTCGCCA
CCTACTTTTTAGGTGCACTGCGTCAAAGCACAAAGAGGTACTACTATTCG
CAAAACTCGGAGACACCCGTGTTTCCCTTGACCCCCATCCATCAGCTCAA
GCCGCCGGTCGCCGATGTGGTCAAGGAGGAGGAACAGCAGCAGCTCAATG
AGTCCTCGATCCTTAGCCGGAGCAGCTGCAGTATGTCCTCCACTTCGAAT
ACTACTCCGGCTCCCCAGCAGCCGCAGGGCAGAAGATCAACGCCAGGAAG
TGGCGCCCAGTTTTGCAGCACGCCTAACAGAAGCGGCGGTGGGGGAGCAG
GAGGAGGGCACAGCATCTGCTTGGGCAACTTTCTGGTCAATACACCTATC
CAGAGCCATCAGCGATCTAAGAAGAAGATCACGCCCCAAAAACAGCAGCA
AAATCAACATGCATCATTGGGTTCAGGAACTGGAGCTGGAGCCACGCCAC
AATCCAAGCCGCGGCGACGTGTCTTACCCATGACCATTAGCAAGAATGTT
TCGGCCAGCTCCTCTTTCGGAGACACCAGTTCCTTTAGCAATGAAAATAA
CTTTTGGCGAATCTCGCAGAGCAGCGAAATCTTCGATAGAAGCCAAGAAG
CAGCCCTGGAAATGGAGGCCCGCAAGTTCCTGTTGCTCAAAAAGCAGGAA
ATCAAAAGCGAAGCGCCTGTGAATGTTAGTCAACAGGAGAGGACACCCGA
AGATGAGGTTTTCCCTGAGGAAGCCATTAGCTTGGAGGGTGTGGCTAATG
CCAATCACTTGCAGCTCCTATCAACCATTTACAGCCTGTTAATGGACCTC
AATTTGGTGCCCAACGTACTACGTGAACTTAGTTTTGTGGTCCATCTGCT
AAATGTGCGAGATTTTGGCCAATCACCCGTCAAATCGTATGTACCCAGTG
CTTTGGAGGGACTCACCCAGCACAAAAGTTGTGTATACTTTGCCGCAAAA
CTGCTGGAGAATCAGAAAAAGTTACTTCTGCAGCTTGACAAACGGACTTT
GAGTGTCTTGCTACAAAACGAGAGATTGAGCCTGCTGCCGCAAGGAGTTG
TCCAAGAATTGGAAACTCACTGTCAGCGGAGGCAGGATTCGACCACACCC
TTCGCTATGGACACCTCTTCGTCCTCCCAGCAGAATGTATACTATCACGT
GGAGAACGACTCGCGGGATAACTTTCCTTCGCAGAATGAGTTCGGGGCCT
TCAAGTCCCAAAGGGACCTCTTTTACAAAGCCCTTAAGCGTTGGGAGGTG
AGCCATCTGAATCGGGGTTTCAACTTTCCCAGCGAACTGGGGCCGCGTAT
TATGGATATCTATAAGAAATCGGAGCACCCAGTTAACATGACGCACCTGG
CAAAATTATTTGTCAACCAATTATTGATCTCCGCTACCGAGACCACCGAA
TCTCCCGAAGAACTGGGCTTAAAGCTGGATCCCCTCAGGCACAATAAGCT
GGCACAGCGCTTGGTGACATCCAGTTCCAGTGTGGAAGGTCAGTTTCCTC
GCTCTCAGGCCTTCTTCCGCGACTTTATCGCCGTATGCTCATCGGTAGCA
TTTCTGGTGCACCTGAAGCTGGAGCTCTTTGTGCAACTAATGCGTAACAA
CGACTCCACCTTTGATCTGCTCCAGCTAACTGACGATGTGGCTGTCGAGG
AGCAGTCCGCTCAGCAGGGACCATACATTGTTCGCGTCCAGACCATGGCT
AACATGCTTATCCTGGCCAAGTTCTTGGGCTACGTAACTGTGATGCCCTT
TAGCGGCACCACGCAACATGGAAACCCAACGCCGCCATATCTTTGTCCAC
AGCAGTTGCAGCTTCGTAACCATTTTCGTCCGGACTTCAATCTCCGCGAG
ATACTCGAACGTTCCATGCGCCAGGGCAAGCTGCTGATTACGCTTCCGTG
GTTAGTTCAATACCTGGCGATGCTCGACTTGGTCAGCCTGCACCTTCCGG
ACGCAGTGGCCACTTTGGAGCTGCTGTACGGATTGTATGCCGACATACGT
ATGGCAAAATTGCAACCAGCAGCTGTGTTCATAGCCAGGAGCTGCATTGG
ATGGCTTTTGGATGCACAGCCGCAGTTGGTTAATGGCTACTACAATTACA
GGGCACAGGAAGCCGGAGTCGGAAGCATTTCGGCAATTGTGGATATCTGC
CTAAAGGACCTCTCGTGTCACGATAAATCGCACGCCCCCTTGTTGGACGA
ACTTCTGCCCGTGGCTTGCCCTTTCCTGCAGGAATTCCGGGTGAGCATCA
CGCCCTCTAGGCAAGCGAAAAGTGGGCGGTTCCGGTACATAACCACTCGG
TTGGAGCAGTTGCAGCAGAACAGCAGTTCCATTTCCAAGGACGCGATAGT
GGCAAGCGAACTGAGTCCCGCGGAGCAGCAGCAGCGCAAATTGGTCGATG
CCTATCTCCAATCCCAAAACGCGTCCACCAGGAGGTTGATCGAGTTCGTC
ACGGAGCGCACTTTTAAGTGTGTCGTTAAGGACGCCCAGCAGGAGATTCT
GCTCCCGTCGAAGGCCTCCGCGGATGCCAAAGTCAACGAAATTAAATCCA
CGATGCTCGAGGAGGTGTTTCAGGAGCTGCATGAGATCTTTCAAGATGCC
AGGGAGAATGCGTGTCAGCGTTGGAAGGAGCATGTGCACCAAATGCTGGA
CAGGCGCATAGAGCACTCCTTGGATGGCCTTCTGCCCTCCAGCACCAATG
CGGTATTGCGGTCTACATATGCTCATTTAATCCGGGTGCAAGCCCAGACT
CAGCTGCAACAGTGGCTCCAGTCGAGCGTGCTTCAGTCCACATTTTATCA
TGGCGACCTTCAGGAGTTAGCCACCAAAGTGTGCAACTGCAATAGGAACA
AGGCAGATGCAGCAGCTGCAGGTGGCGGCGGCTCCAGTGAGCTCCAGCTC
AGTCCGGATATTGGATTCAGCCTGTCGGAGTTTCTCTATCAGCTCCAGCA
GTGGTTGCACTGCCTCAGCTTGCGGCCAGAATATGTGGGCAGTCAAGAAG
ATCTGGCCGAGCTGCTTCGAAAAGCCCAAAAGGCGGTCCTGTTGCCTAAA
ATGCCCACTGTTTTCTATCACCTCATTGGGTCTGGATTAGTTCATTTGCT
TCAGTTGCTCATTACCAGAAAACCGAATTTCCTCGACAAGGATATAATTT
CAGCCAGCTGTTCGGTGTGGCGATCACAGCAGCTTATGGACAGTAAAGCT
TCACCCGGAATCTTTGACGGCTTGATCAGCATTAGTTTTGTGCAGGAGAT
GGCAAACAGTGCGGACAGCTTTCGGATGCTGGAGACGATCCTTAGATCCA
TGCTACAGTCTGGAGCTATACGGGCCGATCATCTCAACGAACTCTTCATG
CCGCTCTTTGCCGAGAACTGGTCGCCGAAAGTGTGGTGCATGCTTTCCGA
ACTTCTGCAGCAACTCTCTCTGTCCGGAAAGGATTCCGAAGCCCATTACG
CCTCTGGCGATAGTCCCGAAGACGAGGCCAAGTCGCATCTCTTCATGGAG
ATGCTGGCCGACTTATCGCGGGATCTGGATAACTTTTAAAAGCTTTCTAG
ACCAT

BS10425.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
dlt-RA 3723 CG32315-PA 1..3723 17..3739 18615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
dlt-RA 4000 CG32315-RA 214..3938 15..3739 18625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1789693..1793417 3739..15 18625 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:26:10 has no hits.

BS10425.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:16 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 1..3723 17..3739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:43 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 195..3932 7..3746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:57 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 216..3936 17..3737 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:28 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 206..3926 17..3737 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:22 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
dlt-RA 216..3936 17..3737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:22 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1789695..1793415 17..3737 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:57 Download gff for BS10425.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1789695..1793415 17..3737 100   Minus

BS10425.pep Sequence

Translation from 16 to 3738

> BS10425.pep
MTAELKASDTEMTKPEERHLLQLLAQLEKVPHHQLEQKFVAYFKKVGKGD
NQSNCTLEDFATYFLGALRQSTKRYYYSQNSETPVFPLTPIHQLKPPVAD
VVKEEEQQQLNESSILSRSSCSMSSTSNTTPAPQQPQGRRSTPGSGAQFC
STPNRSGGGGAGGGHSICLGNFLVNTPIQSHQRSKKKITPQKQQQNQHAS
LGSGTGAGATPQSKPRRRVLPMTISKNVSASSSFGDTSSFSNENNFWRIS
QSSEIFDRSQEAALEMEARKFLLLKKQEIKSEAPVNVSQQERTPEDEVFP
EEAISLEGVANANHLQLLSTIYSLLMDLNLVPNVLRELSFVVHLLNVRDF
GQSPVKSYVPSALEGLTQHKSCVYFAAKLLENQKKLLLQLDKRTLSVLLQ
NERLSLLPQGVVQELETHCQRRQDSTTPFAMDTSSSSQQNVYYHVENDSR
DNFPSQNEFGAFKSQRDLFYKALKRWEVSHLNRGFNFPSELGPRIMDIYK
KSEHPVNMTHLAKLFVNQLLISATETTESPEELGLKLDPLRHNKLAQRLV
TSSSSVEGQFPRSQAFFRDFIAVCSSVAFLVHLKLELFVQLMRNNDSTFD
LLQLTDDVAVEEQSAQQGPYIVRVQTMANMLILAKFLGYVTVMPFSGTTQ
HGNPTPPYLCPQQLQLRNHFRPDFNLREILERSMRQGKLLITLPWLVQYL
AMLDLVSLHLPDAVATLELLYGLYADIRMAKLQPAAVFIARSCIGWLLDA
QPQLVNGYYNYRAQEAGVGSISAIVDICLKDLSCHDKSHAPLLDELLPVA
CPFLQEFRVSITPSRQAKSGRFRYITTRLEQLQQNSSSISKDAIVASELS
PAEQQQRKLVDAYLQSQNASTRRLIEFVTERTFKCVVKDAQQEILLPSKA
SADAKVNEIKSTMLEEVFQELHEIFQDARENACQRWKEHVHQMLDRRIEH
SLDGLLPSSTNAVLRSTYAHLIRVQAQTQLQQWLQSSVLQSTFYHGDLQE
LATKVCNCNRNKADAAAAGGGGSSELQLSPDIGFSLSEFLYQLQQWLHCL
SLRPEYVGSQEDLAELLRKAQKAVLLPKMPTVFYHLIGSGLVHLLQLLIT
RKPNFLDKDIISASCSVWRSQQLMDSKASPGIFDGLISISFVQEMANSAD
SFRMLETILRSMLQSGAIRADHLNELFMPLFAENWSPKVWCMLSELLQQL
SLSGKDSEAHYASGDSPEDEAKSHLFMEMLADLSRDLDNF*

BS10425.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
dlt-PA 1240 CG32315-PA 1..1240 1..1240 6338 100 Plus