Clone Sequence Records
BS10427.3prime Sequence
882 bp (839 high quality bases) assembled on 2006-04-19
> BS10427.3prime
ATGGTCTAGAAAGCTTTCATAAGTCCTGAAAGCGACGCACATCCTCCCAA
TAGTGCGATGGCACCTCGAACATCTTGGCGGGGATGTTGTCGCGGAACTC
GAATTTTTGGAACGTCACCTTGGCGGTCACCGTGTGCAGTACGGGTATCT
CAATCTTCACGGGAAAGCCCGTCGGTAGCTTCAGCGTGACGAATTCGCGC
AGCTTGTTGATGTGTTTTAGGGGTGCCACGACTTCCAGAACGTCCAGCAG
CATATCCACGCTAAGTGGAAAGTCCTTGCTCATGGCTACCGTTGCTCGCA
GCGTCTTGTTGGATTGCTTGTGCACGGGTGTCCGACCCAGTTGCGGGCAC
TTACCGACCTCCGCATCGAGATACTGTCGCCAGGTGACTGTGGGAGGCGG
CGGGGCCTGCAGCGAGCTGCGACGCGGCAGCTCCGGCAGTGAGATGCCAT
TCGGAGCCGTTGGTGTATTGGTCTCCGGCGGCGTGGCCGTGTGCTGGCTG
CCTAGACTGGAGCGACGCGTATCCGGCTGCTGGCTGGCACCCTTGGTAAT
AGTCTCGACAATGGCGCGGTTCTTTTGTAGATCCTCGTGTGACAGGTGTT
CCCGCCTCTTACGCTGCTTCAGGATTAAGCCCTGGATGGTGTAAATTTCG
CACTGGTATTGGCCCCCAATGAGCTCCTTGCGATTGGCGCGGAATATCCA
TCCGCGTTGCGCCCGTGCGAACTGAATCGTCTTGGTGGACATCTGGGTGG
CCAGTATATCGGTCGACATGAGCACATCCACCTCATCCTCCATGTCTGAT
TCCTCGTATCGCAGCCGCTGAAAGCATTCCTGCTCATTGTCCNACAGAAC
CAGCGATTCCCTTGCCGGCGCCTCACCTCTAA
BS10427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PA | 1632 | CG5742-RA | 767..1632 | 882..17 | 4311 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 870..1735 | 882..17 | 4319 | 99.9 | Minus |
| CG5742-RB | 3060 | CG5742-RB | 870..1735 | 882..17 | 4319 | 99.9 | Minus |
| CG5742-RA | 2947 | CG5742-RA | 870..1735 | 882..17 | 4319 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18149676..18150541 | 17..882 | 4319 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:35:11 has no hits.
BS10427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:36 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 769..1632 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:15 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 769..1632 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:17 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 870..1735 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:07 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 870..1735 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:07 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18149676..18150541 | 17..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:17 Download gff for
BS10427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037181..14038046 | 17..882 | 99 | | Plus |
BS10427.5prime Sequence
928 bp (795 high quality bases) assembled on 2006-04-19
> BS10427.5prime
GAAGTTATCAGTCGACATGTCCAAAGAAAAGGAGGACGAGTGCGACAAGC
ACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGAGCGAGGATTCC
GATGAGTACCAATCGGCCGGTGAGGGCGAGGATGGAGACGGCGATGGTGA
CGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCCCACGGTCG
CCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCACTGTGAAGCCA
GCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTTTTCGAGGACGA
CATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGCCCAAGACGAAG
TGGGTAGAAAGGATAAGCACGGCAATACGCCACTCCATCTGGCCGTAATG
CTGGGCAGAAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAACGCCCCCGT
AAAGATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGCCATTAGCT
ACGGCGACCGCCAGACAATCACCCAGGTGCTGCGAATGCTAAAGCTGCAG
TCCCGCGAACACATGGAGAGTCGGCGCGAGAAGCTGGTCAATGCGCTGCG
CCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTTCAATCATGGC
TGCCACTGGTTTCCCGCATCCTGCCCTCGGACATCTGCCGGCTTTACAAG
TCGGGCGCCTCCATTCGTTTGGACACCACACTGGTGGACTTCAATGATAT
GCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGGTGAGGCGCCGG
CAAGGGAATCGCTGGTTCTGTTGGACAATGAGCAGGAATGCTTTCAGCGG
CTGCGATACGAGGAATCAGACATGGAGGATGAGGTGGATGTGCTCATGTC
GACCGATATACTGGCCACCCAGATGTCC
BS10427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PA | 1632 | CG5742-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 101..1015 | 14..928 | 4575 | 100 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 101..1015 | 14..928 | 4575 | 100 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 101..1015 | 14..928 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18150396..18151310 | 928..14 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:49:13 has no hits.
BS10427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:37 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:17 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:58 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 101..1015 | 14..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:02 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 101..1015 | 14..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:02 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18150396..18151310 | 14..928 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:58 Download gff for
BS10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037901..14038815 | 14..928 | 100 | | Minus |
BS10427.complete Sequence
1664 bp (1664 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636654
> BS10427.complete
GAAGTTATCAGTCGACATGTCCAAAGAAAAGGAGGACGAGTGCGACAAGC
ACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGAGCGAGGATTCC
GATGAGTACCAATCGGCCGGTGAGGGCGAGGATGGAGACGGCGATGGTGA
CGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCCCACGGTCG
CCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCACTGTGAAGCCA
GCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTTTTCGAGGACGA
CATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGCCCAAGACGAAG
TGGGTAGAAAGGATAAGCACGGCAATACGCCACTCCATCTGGCCGTAATG
CTGGGCAGAAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAACGCCCCCGT
AAAGATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGCCATTAGCT
ACGGCGACCGCCAGACAATCACCCAGGTGCTGCGAATGCTAAAGCTGCAG
TCCCGCGAACACATGGAGAGTCGGCGCGAGAAGCTGGTCAATGCGCTGCG
CCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTTCAATCATGGC
TGCCACTGGTTTCCCGCATCCTGCCCTCGGACATCTGCCGGCTTTACAAG
TCGGGCGCCTCCATTCGTTTGGACACCACACTGGTGGACTTCAATGATAT
GCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGGTGAGGCGCCGG
CAAGGGAATCGCTGGTTCTGTTGGACAATGAGCAGGAATGCTTTCAGCGG
CTGCGATACGAGGAATCAGACATGGAGGATGAGGTGGATGTGCTCATGTC
GACCGATATACTGGCCACCCAGATGTCCACCAAGACGATTCAGTTCGCAC
GGGCGCAACGCGGATGGATATTCCGCGCCAATCGCAAGGAGCTCATTGGG
GGCCAATACCAGTGCGAAATTTACACCATCCAGGGCTTAATCCTGAAGCA
GCGTAAGAGGCGGGAACACCTGTCACACGAGGATCTACAAAAGAACCGCG
CCATTGTCGAGACTATTACCAAGGGTGCCAGCCAGCAGCCGGATACGCGT
CGCTCCAGTCTAGGCAGCCAGCACACGGCCACGCCGCCGGAGACCAATAC
ACCAACGGCTCCGAATGGCATCTCACTGCCGGAGCTGCCGCGTCGCAGCT
CGCTGCAGGCCCCGCCGCCTCCCACAGTCACCTGGCGACAGTATCTCGAT
GCGGAGGTCGGTAAGTGCCCGCAACTGGGTCGGACACCCGTGCACAAGCA
ATCCAACAAGACGCTGCGAGCAACGGTAGCCATGAGCAAGGACTTTCCAC
TTAGCGTGGATATGCTGCTGGACGTTCTGGAAGTCGTGGCACCCCTAAAA
CACATCAACAAGCTGCGCGAATTCGTCACGCTGAAGCTACCGACGGGCTT
TCCCGTGAAGATTGAGATACCCGTACTGCACACGGTGACCGCCAAGGTGA
CGTTCCAAAAATTCGAGTTCCGCGACAACATCCCCGCCAAGATGTTCGAG
GTGCCATCGCACTATTGGGAGGATGTGCGTCGCTTTCAGGACTTATGAAA
GCTTTCTAGACCAT
BS10427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 1758 | CG5742-PC | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG5742-RB | 1632 | CG5742-PB | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG5742-RA | 1632 | CG5742-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 101..1735 | 14..1648 | 8175 | 100 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 101..1735 | 14..1648 | 8175 | 100 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 101..1735 | 14..1648 | 8175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18149676..18151310 | 1648..14 | 8175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:16:33 has no hits.
BS10427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:12 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 1..1632 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:40 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 78..1712 | 14..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:55 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 104..1734 | 17..1647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:12 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 78..1712 | 14..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:30 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 104..1734 | 17..1647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:30 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18149677..18151307 | 17..1647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:55 Download gff for
BS10427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037182..14038812 | 17..1647 | 100 | | Minus |
BS10427.pep Sequence
Translation from 16 to 1647
> BS10427.pep
MSKEKEDECDKHKQQATADAKSTSSEDSDEYQSAGEGEDGDGDGDGDSPA
ERPPDKTSPTVAVAPTAKAASPLPTVKPASEALDFPMHRSVFEDDIKSLQ
RRLLLSTAQDEVGRKDKHGNTPLHLAVMLGRKHAVRLLLAQNAPVKIKNN
EGWSPLSEAISYGDRQTITQVLRMLKLQSREHMESRREKLVNALRQMQDF
YMEFKWDFQSWLPLVSRILPSDICRLYKSGASIRLDTTLVDFNDMRWERG
DISFLFRGEAPARESLVLLDNEQECFQRLRYEESDMEDEVDVLMSTDILA
TQMSTKTIQFARAQRGWIFRANRKELIGGQYQCEIYTIQGLILKQRKRRE
HLSHEDLQKNRAIVETITKGASQQPDTRRSSLGSQHTATPPETNTPTAPN
GISLPELPRRSSLQAPPPPTVTWRQYLDAEVGKCPQLGRTPVHKQSNKTL
RATVAMSKDFPLSVDMLLDVLEVVAPLKHINKLREFVTLKLPTGFPVKIE
IPVLHTVTAKVTFQKFEFRDNIPAKMFEVPSHYWEDVRRFQDL*
BS10427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PC | 585 | CG5742-PC | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG5742-PB | 543 | CG5742-PB | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG5742-PA | 543 | CG5742-PA | 1..543 | 1..543 | 2816 | 100 | Plus |
| CG15118-PE | 630 | CG15118-PE | 10..505 | 84..539 | 495 | 27.1 | Plus |
| CG15118-PB | 637 | CG15118-PB | 10..505 | 84..539 | 495 | 27.1 | Plus |
