Clone BS10429 Report

Search the DGRC for BS10429

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptsmg-RA
Protein status:BS10429.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10429.3prime Sequence

905 bp (805 high quality bases) assembled on 2006-04-19

> BS10429.3prime
ATGGTCTAGAAAGCTTTTAGAATAGCGTAAAATGTTGATCAAATTTGGCC
AAATTTTCCATCACAACAGCGGCCATGGTCTTCTTTGGTTGTTGCTCCGC
ACTGGACACTCCTCCGCTAAGTTTTCTCTGCTGCTGCTGCTGCTGCGACT
GCTGATTGCGTTCCAATACCAGGTTGTCGTTAGATCCGTTGTTGGTGAGC
ACTCCCTGACCGGGCTTAAAGATCAATTGCTGCGGTTGCTGCGGACCTCC
GGCCACCAGAATAAGATTATTCAGCGACCGGCGATGCGATTGTGGTGGCG
TCTGCTGAGGCAGCGCTGGAAAGTGGTTGTGTTGCTGCAACATCTGTTGC
ATCTGCTGGGGATGATGATGCGACTTACTAGACGGCGGCGGTGGTGGCTG
CTGCTGAGGATTACCCATGAAGCTTGGGTACGAGGAGCTCTTGTACTGCG
GCTGATGGGATGGACCGCCGCCATAGCCGTTGTAGTCAAACTGTGGCAGA
GGCGGCGGAGCCTGCTGCGAATGATGGGGCAGCGGGTGTGGCAGGCAATT
TAGCGAAAAGTTTAGCATGTCGTTGGAGTTTTTGCGGTTGTTAATCCTAT
CGTTGCTGCCATTTTTAGTATCGCATTTGCGAGTCTTACCATTCCATCTT
GGCTTGTTAATGTTCCCATTGTTTGGCCCGACGCCGGCTGGCTTGACGTG
ATGCATTTTGGGAACCATGGAGATCTTCATTTTGGACAACTTAAACTTCA
GGTCCTTGAGTTGACTGGCGTGATTCATAAATGCCTCGTTGTGGATAGAG
CGGTCTAGAATCCACATAAGCACACCCAAAGTCTCGTCGTCTTGGACAGC
ATACGGATCCTGCTGCAACGTATTGGTCACAATGTCAATGACCTTAAGAA
AACGC

BS10429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5263-PB 3000 smg-RB 2112..3000 905..17 4445 100 Minus
CG5263-PA 3000 smg-RA 2112..3000 905..17 4445 100 Minus
CG5263-PC 3000 smg-RC 2112..3000 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 2398..3287 905..16 4450 100 Minus
smg-RC 4562 CG5263-RC 2495..3384 905..16 4450 100 Minus
smg-RA 4670 CG5263-RA 2603..3492 905..16 4450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8992452..8993043 58..649 2960 100 Plus
3L 28110227 3L 8993099..8993356 648..905 1290 100 Plus
3L 28110227 3L 8991495..8991538 16..59 220 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:36:41 has no hits.

BS10429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:41 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-PC 2112..3000 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:21 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5263-PC 2112..3000 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:43 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-RA 2603..3492 16..905 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:45 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
smg-RA 2603..3492 16..905 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:45 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8991495..8991537 16..58 100 <- Plus
3L 8992453..8993041 59..647 100 <- Plus
3L 8993099..8993356 648..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:43 Download gff for BS10429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8984595..8984637 16..58 100 <- Plus
arm_3L 8985553..8986141 59..647 100 <- Plus
arm_3L 8986199..8986456 648..905 100   Plus

BS10429.5prime Sequence

990 bp (836 high quality bases) assembled on 2006-04-19

> BS10429.5prime
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCANATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCNA
GCGGCTGCGGCGGGCCTGACAAATCGCAGTTACTTCCTGCAGCCCTCGCC
CGCACTGGTCGCTGGTGGTAGCTCAACAGGCAGTGGTAGCTGTTCCTCTT
CGGCGACCAGCTCTTCAACAGCATCCTGGTCGTCGGTGGG

BS10429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5263-PB 3000 smg-RB 1..884 17..900 4382 99.7 Plus
CG5263-PA 3000 smg-RA 1..884 17..900 4382 99.7 Plus
CG5263-PC 3000 smg-RC 1..884 17..900 4382 99.7 Plus
CG5263-PB 3000 smg-RB 888..973 904..989 380 97.6 Plus
CG5263-PA 3000 smg-RA 888..973 904..989 380 97.6 Plus
CG5263-PC 3000 smg-RC 888..973 904..989 380 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 283..1259 13..989 4773 99.3 Plus
smg-RD 4927 CG5263-RD 336..1312 13..989 4773 99.3 Plus
smg-RC 4562 CG5263-RC 380..1356 13..989 4773 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8994495..8995471 989..13 4773 99.2 Minus
Blast to na_te.dros performed on 2015-02-13 08:36:56 has no hits.

BS10429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:42 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-PC 1..973 17..990 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:23 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5263-PC 1..973 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:46 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..1356 6..990 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:26:48 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..1356 6..990 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:26:48 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8994494..8995477 6..990 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:46 Download gff for BS10429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8987594..8988577 6..990 98   Minus

BS10429.complete Sequence

3032 bp assembled on 2007-11-30

GenBank Submission: FJ636656

> BS10429.complete
GAAGTTATCAGTCGACATGAAGTACGCAACTGGAACTGACAACGCGATGA
CCTCCGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAG
ATGCAGCCAACCACATCAACGCCTACTGCAGCCCACAAGGAGGCCACATC
AACGGCCACGACGACGGCGACATACGCCAATGGCAATCCCAATTCTAACG
CCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCTGTTTTGCGAGCAGGTG
ACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCGAACCGT
CGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTC
TACAGTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAG
ACCAATCTGAGCAGCGTGGTTATTGACATCAATGCCAACAATCCGGTGTA
CCTGCAGAATCTACTCAACGCCTACAAGACGTTCCAGCCATGTGACCTGC
TCGACGCCATGTCCTCCTCGTCGTCCGACAAGGACTCGATGCCATGCTAC
GGCAGTGACTTCCAGATCACCACATCGGCGCAGTGTGACGAGCGGAAGCT
GTATGCCCGCAAGGAGGACATTCTGCATGAAGTACTGAACATGCTGCCTC
TGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTATCTACCTGACCCTTATA
CCAGTTGCCGTCAAGGACACCATGCAGCAAATTGTGCCCACGGAGTTGGT
GCAGCAGATCTTCTCGTACCTACTCATCCATCCAGCTATCACCAGCGAGG
ACAGACGTTCGCTCAACATTTGGCTGCGTCACTTGGAGGATCATATCCAA
GCGGCTGCGGCGGGCCTGACAAATCGCAGTTACTTCCTGCAGCCCTCGCC
GCAACTGGTCGCTGGTGGTAGCTCAACAGGCAGTGGTAGCTGTTCCTCTT
CGGCGACCAGCTCTTCGACAGCATCCTGTTCGTCGGTGGCCTCATCCTCG
TTGTGCCCCGCAAGCGGCAGCCGTTCCTCACGCACCAACGACTGGCAAAC
GATCGCCCCGCCCAGCAAGCAATTGCAAAACAAATTGGCCGGTGATTGGC
GTGGCAATGGAGGCGGCAGCTCCAGCGGGTCGATCAATCCACTCTGTGAT
AATCTTAATGGTATTACCCTGAACGAATTAGCTTCTAGTCAGAACAGTCT
CGGCCTGTCGCTGGAGGGCAGCTCTTCCCTGGTCAACGGTGTGGTCGCTG
GTGCAGGCTCTATGTTGGGAATCGCTGGTGGCGACGATCATGACACGTCA
TTTAGCAAGAATGGCACGGAGATTCTCGATTTTGACCCGGTGACGGCGGA
CATGGGTGAGGCCTGTAGTCTGGCCAGCAGTAGCCTTTGTGGACGTAACG
GTGGAAATCCTGTTGAGGATCGATCGCAACCTCCGCCGAATCTTCAGCAG
CAATTGCTTCAGCCTCCTCCCTATGCCTCGATCCTTATGGGAAACGTGGG
CGATCAGTTTGGAGAGATCAACCGGTGGAGCCTGGACAGCAAGATTGCAG
CCCTGAAGACGCGGCGCTCTAACAGCCTCACCACGCAAACGATCTCTAGC
TGTTCCAGCTCGTCTAACTCATCGGTGATCACGGTCAATGACAACTGCTC
CAATTCAACGGAGAATCTGGCACAGTTTGCCAACAAGCCCCGTAGTTTTT
CCTTATCGATTGAGCATCAGCGCGGCGCCTTGATGAACAGCGGTTCCGAT
ACTCGTCTGGATGAATTCAAGCCCAATTATATTAAGTTCCACACGCGCAA
CGTGGGCATGTCGGGAATCGGACTCTGGCTAAAATCCTTGCGTCTGCACA
AGTACATCGAGCTGTTCAAGAACATGACGTACGAGGAAATGCTCTTGATC
ACCGAGGACTTTCTGCAGAGTGTTGGCGTCACCAAGGGCGCCTCCCACAA
GCTTGCCCTTTGCATTGATAAGCTGAAGGAACGGGCCAATATTCTTAACC
GGGTAGAACAAGAACTGCTATCGGGTCAAATGGAGCTGAGCACGGCGGTT
GAGGAGCTAACAAATATTGTGCTGACACCAATGAAGCCACTGGAGTCTCC
AGGACCACCGGAGGAAAACATTGGTCTGCGTTTTCTTAAGGTCATTGACA
TTGTGACCAATACGTTGCAGCAGGATCCGTATGCTGTCCAAGACGACGAG
ACTTTGGGTGTGCTTATGTGGATTCTAGACCGCTCTATCCACAACGAGGC
ATTTATGAATCACGCCAGTCAACTCAAGGACCTGAAGTTTAAGTTGTCCA
AAATGAAGATCTCCATGGTTCCCAAAATGCATCACGTCAAGCCAGCCGGC
GTCGGGCCAAACAATGGGAACATTAACAAGCCAAGATGGAATGGTAAGAC
TCGCAAATGCGATACTAAAAATGGCAGCAACGATAGGATTAACAACCGCA
AAAACTCCAACGACATGCTAAACTTTTCGCTAAATTGCCTGCCACACCCG
CTGCCCCATCATTCGCAGCAGGCTCCGCCGCCTCTGCCACAGTTTGACTA
CAACGGCTATGGCGGCGGTCCATCCCATCAGCCGCAGTACAAGAGCTCCT
CGTACCCAAGCTTCATGGGTAATCCTCAGCAGCAGCCACCACCGCCGCCG
TCTAGTAAGTCGCATCATCATCCCCAGCAGATGCAACAGATGTTGCAGCA
ACACAACCACTTTCCAGCGCTGCCTCAGCAGACGCCACCACAATCGCATC
GCCGGTCGCTGAATAATCTTATTCTGGTGGCCGGAGGTCCGCAGCAACCG
CAGCAATTGATCTTTAAGCCCGGTCAGGGAGTGCTCACCAACAACGGATC
TAACGACAACCTGGTATTGGAACGCAATCAGCAGTCGCAGCAGCAGCAGC
AGCAGAGAAAACTTAGCGGAGGAGTGTCCAGTGCGGAGCAACAACCAAAG
AAGACCATGGCCGCTGTTGTGATGGAAAATTTGGCCAAATTTGATCAACA
TTTTACGCTATTCTAAAAGCTTTCTAGACCAT

BS10429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 3000 CG5263-PE 1..3000 17..3016 15000 100 Plus
smg-RC 3000 CG5263-PC 1..3000 17..3016 15000 100 Plus
smg-RA 3000 CG5263-PA 1..3000 17..3016 15000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
smg-RE 4465 CG5263-RE 283..3287 13..3017 15010 100 Plus
smg-RC 4562 CG5263-RC 380..3384 13..3017 15010 100 Plus
smg-RA 4670 CG5263-RA 488..3492 13..3017 15010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8993099..8995471 2385..13 11850 100 Minus
3L 28110227 3L 8992452..8993043 2975..2384 2960 100 Minus
3L 28110227 3L 8991495..8991538 3017..2974 220 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:03 has no hits.

BS10429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:18 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 1..3000 17..3016 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:48 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 374..3384 6..3017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:46 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RA 492..3489 17..3014 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:36 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RC 384..3381 17..3014 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:03 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
smg-RA 492..3489 17..3014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:03 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8991498..8991537 2975..3014 100 <- Minus
3L 8992453..8993041 2386..2974 100 <- Minus
3L 8993099..8995467 17..2385 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:46 Download gff for BS10429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8984598..8984637 2975..3014 100 <- Minus
arm_3L 8985553..8986141 2386..2974 100 <- Minus
arm_3L 8986199..8988567 17..2385 100   Minus

BS10429.pep Sequence

Translation from 16 to 3015

> BS10429.pep
MKYATGTDNAMTSGISGQTNNSNSASNEMQPTTSTPTAAHKEATSTATTT
ATYANGNPNSNANPSQSQPSNALFCEQVTTVTNLFEKWNDCERTVVMYAL
LKRLRYPSLKFLQYSIDSNLTQNLGTSQTNLSSVVIDINANNPVYLQNLL
NAYKTFQPCDLLDAMSSSSSDKDSMPCYGSDFQITTSAQCDERKLYARKE
DILHEVLNMLPLLKPGNEEAKLIYLTLIPVAVKDTMQQIVPTELVQQIFS
YLLIHPAITSEDRRSLNIWLRHLEDHIQAAAAGLTNRSYFLQPSPQLVAG
GSSTGSGSCSSSATSSSTASCSSVASSSLCPASGSRSSRTNDWQTIAPPS
KQLQNKLAGDWRGNGGGSSSGSINPLCDNLNGITLNELASSQNSLGLSLE
GSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEAC
SLASSSLCGRNGGNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGE
INRWSLDSKIAALKTRRSNSLTTQTISSCSSSSNSSVITVNDNCSNSTEN
LAQFANKPRSFSLSIEHQRGALMNSGSDTRLDEFKPNYIKFHTRNVGMSG
IGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCI
DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLTPMKPLESPGPPEE
NIGLRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWILDRSIHNEAFMNHA
SQLKDLKFKLSKMKISMVPKMHHVKPAGVGPNNGNINKPRWNGKTRKCDT
KNGSNDRINNRKNSNDMLNFSLNCLPHPLPHHSQQAPPPLPQFDYNGYGG
GPSHQPQYKSSSYPSFMGNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFP
ALPQQTPPQSHRRSLNNLILVAGGPQQPQQLIFKPGQGVLTNNGSNDNLV
LERNQQSQQQQQQRKLSGGVSSAEQQPKKTMAAVVMENLAKFDQHFTLF*

BS10429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
smg-PE 999 CG5263-PE 1..999 1..999 5205 100 Plus
smg-PC 999 CG5263-PC 1..999 1..999 5205 100 Plus
smg-PA 999 CG5263-PA 1..999 1..999 5205 100 Plus
smg-PB 999 CG5263-PB 1..999 1..999 5205 100 Plus
smg-PD 1109 CG5263-PD 1..986 1..986 5135 100 Plus