Clone Sequence Records
BS10431.3prime Sequence
923 bp (776 high quality bases) assembled on 2006-04-19
> BS10431.3prime
ATGGTCTAGAAAGCTTTTAGTCTTGCACCTCTCGATACGGCACCTCCGAC
GTGACCGAGAAGGACTCGAAGTAGTGGTTCAAGAACTCGAATGTCGGCCG
CTTCTCGGGCACAGCATCCCAGCACTGGAGCAGCAGCTGATAAATGTTGT
CCGGGAAGTAGTGATTCGTTGGCTTCGGCATGCGGAAACCGCGCTCGATG
TTCTCAATCACCTCGCGACTATGCATGCCCGGATAGGGCACTTGTCCGTA
CGTGAACAGCTCCATCAGCAGAATGCCATAGGACCACACGTCCGACTTGA
TCGAGAACTTGCCGTAGATGATCGCCTCGGGCGCCGTCCACTTGACCGGA
AACCGGGATCCCTGCTTGGGGCAGTACTCGTCATCCGCGATGACACGCGC
CAGTCCAAAATCACAAATCTTCGCCACATTATTCTCTCCGATCAGCACAT
TACGGGCCGCCAGATCGCGATGGATGAGCTGCTTGGACTCTAGATACTCC
ATACCGCTGGCCACCTGGGTGGCTATGTAGATGAGATCTTCGAAGTGCAA
GTAGCGGCCATCGCCCTCGCGCAAGAAGTCCAGCAGACTGCCCTTGGACA
TGTACTCCTGCACGATGTAAATGGGCTCCTCCTGCGAGCAAACGGCATAG
AGGGCCACCAGGCGGTTGTGTCGGAACTTCTTCATAATCGCGGCCTCCTG
AAGGAAAGCAGCCGTGGACATGGTGCCTTCGCGCAGCGTTTTGACCGCCA
CATCGATGCTGTTGCGCCATTTGCCGTAGAAGACCTCGCCAAAGTTGCCG
CGTCCCAGTTTGCGCAGCAGCTGAATCTCCGAGCGCGGAATCTCGTACTT
ATCGCGCAGCTCCGGACCCAAGTCCCACATCTGGGGCTGCGGTTTGGGGC
AGGGACGCGAACATATGTGACAC
BS10431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7524-PE | 1659 | Src64B-RE | 753..1659 | 923..17 | 4485 | 99.7 | Minus |
CG7524-PF | 1659 | Src64B-RF | 753..1659 | 923..17 | 4485 | 99.7 | Minus |
CG7524-PC | 1659 | Src64B-RC | 753..1659 | 923..17 | 4485 | 99.7 | Minus |
CG7524-PD | 1659 | Src64B-RD | 753..1659 | 923..17 | 4485 | 99.7 | Minus |
CG7524-PB | 1659 | Src64B-RB | 753..1659 | 923..17 | 4485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src64B-RD | 2815 | CG7524-RD | 1784..2691 | 923..16 | 4510 | 99.8 | Minus |
Src64B-RC | 2567 | CG7524-RC | 1536..2443 | 923..16 | 4510 | 99.8 | Minus |
Src64B-RI | 4338 | CG7524-RI | 1686..2593 | 923..16 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4594640..4595263 | 16..639 | 3105 | 99.8 | Plus |
3L | 28110227 | 3L | 4595316..4595608 | 631..923 | 1435 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:35:40 has no hits.
BS10431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:46 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7524-PC | 753..1659 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:27 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7524-PB | 753..1659 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:19 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 1686..2593 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:37 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 1686..2593 | 16..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:37 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4594640..4595255 | 16..631 | 100 | <- | Plus |
3L | 4595317..4595608 | 632..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:19 Download gff for
BS10431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4594640..4595255 | 16..631 | 100 | <- | Plus |
arm_3L | 4595317..4595608 | 632..923 | 99 | | Plus |
BS10431.5prime Sequence
861 bp (838 high quality bases) assembled on 2006-04-19
> BS10431.5prime
GAAGTTATCAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATC
AGGAACTGGCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTAC
ACCTTTGGCCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGG
CGTTCTTGGCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACA
CGCCCGATCCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGC
GTTGACATCATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGT
GCTCAAGCGCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAAT
CCGATCTGAGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACC
GAGTCCGATTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCT
CATCCCGCTCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACT
GGTTCTTTGAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCC
GAGGAGAATCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCC
CAATGGCTACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACC
ATGTGAAGCACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATA
GCCACCAATCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAG
CAAAAACGCTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCAAAC
CGCAGCCCCAGATGTGGGACTTGGGTCCGGAGCTGCGCGATAAGTACGAG
ATTCCGCGCTC
BS10431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7524-PE | 1659 | Src64B-RE | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7524-PF | 1659 | Src64B-RF | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7524-PC | 1659 | Src64B-RC | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7524-PD | 1659 | Src64B-RD | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7524-PB | 1659 | Src64B-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src64B-RD | 2815 | CG7524-RD | 1031..1876 | 16..861 | 4230 | 100 | Plus |
Src64B-RC | 2567 | CG7524-RC | 783..1628 | 16..861 | 4230 | 100 | Plus |
Src64B-RI | 4338 | CG7524-RI | 933..1778 | 16..861 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4598154..4598419 | 281..16 | 1330 | 100 | Minus |
3L | 28110227 | 3L | 4595692..4595945 | 752..499 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 4596064..4596284 | 498..278 | 1090 | 99.5 | Minus |
3L | 28110227 | 3L | 4595516..4595624 | 861..753 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:40:02 has no hits.
BS10431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:48 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7524-PC | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:28 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7524-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:22 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 930..1778 | 10..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:51 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 930..1778 | 10..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:51 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4595516..4595624 | 753..861 | 100 | <- | Minus |
3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
3L | 4598154..4598422 | 10..281 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:22 Download gff for
BS10431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4595516..4595624 | 753..861 | 100 | <- | Minus |
arm_3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
arm_3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
arm_3L | 4598154..4598422 | 10..281 | 98 | | Minus |
BS10431.complete Sequence
1691 bp assembled on 2007-07-13
GenBank Submission: FJ636658
> BS10431.complete
GAAGTTATCAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATC
AGGAACTGGCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTAC
ACCTTTGGCCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGG
CGTTCTTGGCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACA
CGCCCGATCCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGC
GTTGACATCATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGT
GCTCAAGCGCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAAT
CCGATCTGAGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACC
GAGTCCGATTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCT
CATCCCGCTCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACT
GGTTCTTTGAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCC
GAGGAGAATCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCC
CAATGGCTACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACC
ATGTGAAGCACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATA
GCCACCAATCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAG
CAAAAACGCTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCAAAC
CGCAGCCCCAGATGTGGGACTTGGGTCCGGAGCTGCGCGATAAGTACGAG
ATTCCGCGCTCGGAGATTCAGCTGCTGCGCAAACTGGGACGCGGCAACTT
TGGCGAGGTCTTCTACGGCAAATGGCGCAACAGCATCGATGTGGCGGTCA
AAACGCTGCGCGAAGGCACCATGTCCACGGCTGCTTTCCTTCAGGAGGCC
GCGATTATGAAGAAGTTCCGACACAACCGCCTGGTGGCCCTCTATGCCGT
TTGCTCGCAGGAGGAGCCCATTTACATCGTGCAGGAGTACATGTCCAAGG
GCAGTCTGCTGGACTTCTTGCGCGAGGGCGATGGCCGCTACTTGCACTTC
GAAGATCTCATCTACATAGCCACCCAGGTGGCCAGCGGTATGGAGTATCT
AGAGTCCAAGCAGCTCATCCATCGCGATCTGGCGGCCCGTAATGTGCTGA
TCGGAGAGAATAATGTGGCGAAGATTTGTGATTTTGGACTGGCGCGTGTC
ATCGCGGATGACGAGTACTGCCCCAAGCAGGGATCCCGGTTTCCGGTCAA
GTGGACGGCGCCCGAGGCGATCATCTACGGCAAGTTCTCGATCAAGTCGG
ACGTGTGGTCCTATGGCATTCTGCTGATGGAGCTGTTCACGTACGGACAA
GTGCCCTATCCGGGCATGCATAGTCGCGAGGTGATTGAGAACATCGAGCG
CGGTTTCCGCATGCCGAAGCCAACGAATCACTACTTCCCGGACAACATTT
ATCAGCTGCTGCTCCAGTGCTGGGATGCTGTGCCCGAGAAGCGGCCGACA
TTCGAGTTCTTGAACCACTACTTCGAGTCCTTCTCGGTCACGTCGGAGGT
GCCGTATCGAGAGGTGCAAGACTAAAAGCTTTCTAGACCAT
BS10431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src64B-RD | 1659 | CG7524-PD | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Src64B-RC | 1659 | CG7524-PC | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Src64B-RI | 1659 | CG7524-PI | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src64B-RD | 2815 | CG7524-RD | 1031..2691 | 16..1676 | 8305 | 100 | Plus |
Src64B-RC | 2567 | CG7524-RC | 783..2443 | 16..1676 | 8305 | 100 | Plus |
Src64B-RI | 4338 | CG7524-RI | 933..2593 | 16..1676 | 8305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4594640..4595263 | 1676..1053 | 3105 | 99.8 | Minus |
3L | 28110227 | 3L | 4595316..4595624 | 1061..753 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 4598154..4598419 | 281..16 | 1330 | 100 | Minus |
3L | 28110227 | 3L | 4595692..4595945 | 752..499 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 4596064..4596284 | 498..278 | 1090 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:36 has no hits.
BS10431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:40 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RC | 1..1659 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:07 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RC | 844..2507 | 10..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:35 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 934..2590 | 17..1673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:40 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RC | 844..2507 | 10..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:29 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src64B-RI | 934..2590 | 17..1673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:29 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
3L | 4598154..4598418 | 17..281 | 100 | | Minus |
3L | 4594643..4595255 | 1061..1673 | 100 | <- | Minus |
3L | 4595317..4595624 | 753..1060 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:35 Download gff for
BS10431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4594643..4595255 | 1061..1673 | 100 | <- | Minus |
arm_3L | 4595317..4595624 | 753..1060 | 100 | <- | Minus |
arm_3L | 4595692..4595945 | 499..752 | 100 | <- | Minus |
arm_3L | 4596064..4596280 | 282..498 | 100 | <- | Minus |
arm_3L | 4598154..4598418 | 17..281 | 100 | | Minus |
BS10431.pep Sequence
Translation from 16 to 1674
> BS10431.pep
MGNKCCSKRQDQELALAYPTGGYKKSDYTFGQTHINSSGGGNMGGVLGQK
HNNGGSLDSRYTPDPNHRGPLKIGGKGGVDIIRPRTTPTGVPGVVLKRVV
VALYDYKSRDESDLSFMKGDRMEVIDDTESDWWRVVNLTTRQEGLIPLNF
VAEERSVNSEDWFFENVLRKEADKLLLAEENPRGTFLVRPSEHNPNGYSL
SVKDWEDGRGYHVKHYRIKPLDNGGYYIATNQTFPSLQALVMAYSKNALG
LCHILSRPCPKPQPQMWDLGPELRDKYEIPRSEIQLLRKLGRGNFGEVFY
GKWRNSIDVAVKTLREGTMSTAAFLQEAAIMKKFRHNRLVALYAVCSQEE
PIYIVQEYMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQL
IHRDLAARNVLIGENNVAKICDFGLARVIADDEYCPKQGSRFPVKWTAPE
AIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGFRMP
KPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFLNHYFESFSVTSEVPYREV
QD*
BS10431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src64B-PD | 552 | CG7524-PD | 1..552 | 1..552 | 2957 | 100 | Plus |
Src64B-PC | 552 | CG7524-PC | 1..552 | 1..552 | 2957 | 100 | Plus |
Src64B-PI | 552 | CG7524-PI | 1..552 | 1..552 | 2957 | 100 | Plus |
Src64B-PH | 552 | CG7524-PH | 1..552 | 1..552 | 2957 | 100 | Plus |
Src64B-PF | 552 | CG7524-PF | 1..552 | 1..552 | 2957 | 100 | Plus |